Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ALPL	249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21889674	21889674	+	Silent	SNP	C	C	A	rs201342272		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ALPL-94	NM_000478	exon5	c.C369A	p.A123A	GAAGGCCAATGAG	.	179	71	263	0	C|0.999;A|0.001	48	2	46	0	0
FAM46B	115572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27333078	27333078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAM46B-90	NM_052943	exon2	c.T635A	p.F212Y	AATTCAAACTGGC	.	53	16	96	0	.	6	1	5	0	0
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34643683	34643683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C1orf94-90	NM_001134734	exon1	c.G293C	p.R98T	CTCTAAGAGGCAA	.	77	24	133	0	.	0	0	0	0	0
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52897102	52897102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZCCHC11-93	NM_001009881	exon28	c.C4294A	p.Q1432K	ATGGCTGAGGCTG	.	60	19	88	0	.	15	3	12	0	0
HS2ST1	9653	broad.mit.edu	37	1	87570377	87570377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HS2ST1-90	NM_012262	exon7	c.T1069C	p.X357R	TCGAACTGAGTAT	.	41	13	24	0	.	3	2	1	0	0
RUSC1	23623	broad.mit.edu	37	1	155292770	155292770	+	Silent	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RUSC1-92	NM_001105203	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG	.	24	8	17	4	.	0	0	0	0	0
RABIF	5877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202850297	202850297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RABIF-227	NM_002871	exon2	c.G181A	p.D61N	CGCCGTCAGGATT	.	48	18	63	0	.	14	10	4	0	0
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214826247	214826247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CENPF-567	NM_016343	exon16	c.T8237C	p.I2746T	TGGAGATAGACCT	.	120	25	101	0	.	2	2	0	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228511117	228511117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OBSCN-403	NM_001271223	exon67	c.G18333A	p.M6111I	GCCCATGCCCAGT	.	102	23	112	0	.	1	1	0	0	0
OR2W3	343171	hgsc.bcm.edu	37	1	248059782	248059782	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR2W3-115	NM_001001957	exon1	c.G894A	p.K298K	GGTGAAGGGGGCA	.	80	5	111	0	.	0	0	0	0	0
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21970293	21970293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MLLT10-658	NM_001195626	exon11	c.T1654A	p.C552S	GGAGCTTGCCCAA	.	97	29	88	0	.	1	0	1	0	0
ENKUR	219670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25288439	25288439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ENKUR-90	NM_145010	exon2	c.C114A	p.D38E	TTGCATGTCATCT	.	86	19	72	0	.	0	0	0	0	0
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71136714	71136714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HK1-252	NM_033498	exon11	c.G912T	p.M304I	TGGCATGTACTTG	.	255	59	236	0	.	27	20	7	0	0
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104103846	104103846	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GBF1-91	NM_001199378	exon4	c.T202G	p.F68V	CGACCTTTTCTGG	.	116	27	82	0	.	5	4	1	0	0
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4567069	4567069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR52M1-68	NM_001004137	exon1	c.A649T	p.I217F	GTGGCTATTGCTG	.	144	32	155	0	.	0	0	0	0	0
RIC3	79608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	8132577	8132577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RIC3-155	NM_001206671	exon6	c.G778A	p.E260K	CTATTTCTTCAGC	.	231	47	192	0	.	4	1	3	0	0
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46895104	46895104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LRP4-94	NM_002334	exon29	c.G4270C	p.G1424R	CTCGCCCGATCAC	.	84	25	78	0	.	5	3	2	0	0
BRMS1	25855	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	66108763	66108763	+	Missense_Mutation	SNP	T	T	A	rs199933125	byfrequency;alternate_allele	TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	BRMS1-90	NM_015399	exon4	c.A272T	p.E91V	ACTTCCTCCAGCC	.	72	15	80	0	T|0.993;C|0.007	30	15	12	3	0
CASP1	834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104901192	104901192	+	Silent	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CASP1-661	NM_001257118	exon5	c.T492G	p.L164L	GAGAGCAAGACGT	.	57	14	75	1	.	28	25	3	0	0
OR10G9	219870	bcgsc.ca	37	11	123894195	123894195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR10G9-92	NM_001001953	exon1	c.C476T	p.T159I	TCCAGACCATATT	.	307	81	361	2	.	0	0	0	0	0
BCDIN3D	144233	ucsc.edu;bcgsc.ca	37	12	50232259	50232259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	BCDIN3D-69	NM_181708	exon2	c.C774A	p.S258R	CAGAAGGCTTCTG	.	38	4	41	0	.	9	9	0	0	0
TAOK3	51347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118651868	118651868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TAOK3-933	NM_016281	exon10	c.T691A	p.Y231N	TGTGATATAAGGC	.	83	17	58	0	.	14	10	4	0	0
ATP7B	540	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52509756	52509756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ATP7B-92	NM_000053	exon20	c.T4097C	p.V1366A	AGCACCACAGACA	.	144	37	186	1	.	5	1	4	0	0
G2E3	55632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31081505	31081505	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	G2E3-660	NM_017769	exon13	c.G1593A	p.T531T	TATAACGACATTA	.	175	40	183	0	.	3	3	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45645152	45645152	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FANCM-569	NM_020937	exon14	c.C3195G	p.C1065W	AAGTTGCCTTTAT	.	123	31	87	0	.	1	1	0	0	0
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55642723	55642723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DLGAP5-92	NM_014750	exon9	c.G1063T	p.A355S	TTGTTGCTTGAGA	.	73	10	71	0	.	0	0	0	0	0
APBA2	321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	29346718	29346718	+	Missense_Mutation	SNP	C	C	T	rs149847107		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	APBA2-90	NM_005503	exon3	c.C631T	p.R211C	CCCTACCGCCTGA	.	162	10	210	0	C|1.000;T|0.000	0	0	0	0	0
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51285700	51285700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AP4E1-90	NM_007347	exon17	c.G2224T	p.D742Y	AATGTAGATCAAG	.	56	8	59	0	.	2	2	0	0	0
PKM	5315	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72499107	72499107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_001206796	exon9	c.G1324A	p.G442R	AGTCCCCTTTGGC	.	36	4	62	0	.	889	492	397	0	0
MESP2	145873	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90321562	90321562	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MESP2-68	NM_001039958	exon2	c.C1191T	p.Y397Y	CTTCTACTAAATG	.	143	32	156	1	.	1	1	0	0	0
CHD2	1106	hgsc.bcm.edu	37	15	93541851	93541851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CHD2-229	NM_001271	exon31	c.G4008T	p.E1336D	GGAAGAGGTGAGT	.	74	4	74	0	.	1	1	0	0	0
CCDC64B	146439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3078701	3078701	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_001103175	exon7	c.A1238T	p.K413M	GCTTACTTGTTCA	.	70	16	72	0	.	0	0	0	0	0
ZNF75A	7627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3367508	3367508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF75A-153	NM_153028	exon6	c.T530C	p.I177T	ACCTTATTAAGCA	.	174	43	161	1	.	11	7	4	0	0
NLRC3	197358	ucsc.edu	37	16	3593429	3593429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NLRC3-96	NM_178844	exon18	c.C2935A	p.L979I	ACTCGAGAATCTC	.	44	4	36	0	.	0	0	0	0	0
TMC5	79838	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19474632	19474632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TMC5-91	NM_001105249	exon7	c.G1179T	p.Q393H	CAAACAGACCCAT	.	71	18	68	2	.	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27549611	27549611	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GTF3C1-94	NM_001520	exon3	c.G498A	p.E166E	ATCCCCCTCCTGG	.	74	20	79	0	.	18	13	5	0	0
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68853183	68853183	+	Silent	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CDH1-3377	NM_004360	exon11	c.A1566C	p.T522T	GTTCAGATATCGG	.	92	22	116	0	.	0	0	0	0	0
CPNE7	27132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89650107	89650107	+	Silent	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CPNE7-90	NM_014427	exon5	c.T585A	p.I195I	ACAGATTGTGGCC	.	107	29	120	0	.	0	0	0	0	0
ELP5	23587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7157996	7157996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_203414	exon4	c.T331C	p.C111R	GCCATGTGCAAGA	.	71	19	62	0	.	129	42	86	1	0
ATPAF2	91647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17925092	17925092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ATPAF2-90	NM_145691	exon6	c.C583T	p.H195Y	CCAGGTGGCTGAC	.	125	34	126	0	.	51	31	20	0	0
KRTAP29-1	100533177	bcgsc.ca	37	17	39458844	39458844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_001257309	exon1	c.C260G	p.S87C	GCGTGGGAGCACA	.	78	18	65	1	.	0	0	0	0	0
TIMP2	7077	hgsc.bcm.edu	37	17	76921135	76921135	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TIMP2-650	NM_003255	exon1	c.C36T	p.L12L	GAGGCCGAGCGCC	.	6	6	0	0	.	4	0	4	0	0
DYM	54808	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46798650	46798650	+	Silent	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DYM-226	NM_017653	exon11	c.G1149C	p.L383L	ATGATACAGAATC	.	123	35	151	1	.	35	25	10	0	0
HMHA1	23526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1082889	1082889	+	Silent	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HMHA1-91	NM_001258328	exon20	c.G2616T	p.L872L	AGGGCTGGCCAAG	.	49	19	49	0	.	33	33	0	0	0
SAFB	6294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5653148	5653148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SAFB-228	NM_002967	exon10	c.C1316T	p.T439I	TTGTGACAAATGC	.	178	57	227	1	.	57	34	23	0	0
MRI1	84245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13883025	13883025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MRI1-91	NM_001031727	exon6	c.A1040T	p.E347V	CCCCTGAGGAGCT	.	208	48	217	0	.	21	17	4	0	0
PRKACA	5566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14211641	14211641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	PRKACA-978	NM_002730	exon5	c.T416C	p.F139S	TACCTGAACCTTC	.	131	40	143	1	.	0	0	0	0	0
USHBP1	83878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17366410	17366410	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	USHBP1-91	NM_031941	exon10	c.C1476T	p.A492A	CGCCAGGGCCTCC	.	79	14	79	0	.	0	0	0	0	0
CBLC	23624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45281521	45281521	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CBLC-849	NM_001130852	exon1	c.C333G	p.F111L	GCTCTTCCGGGCG	.	19	5	18	0	.	3	3	0	0	0
ZNF577	84765	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	52376955	52376955	+	Silent	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF577-91	NM_032679	exon7	c.T288C	p.F96F	GATTACAAAACCT	.	59	13	41	0	.	0	0	0	0	0
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58489700	58489700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF606-92	NM_025027	exon7	c.A2348G	p.Q783R	TTTCTCTGGTGTT	.	152	39	134	0	.	8	5	3	0	0
CYP27C1	339761	ucsc.edu	37	2	127950814	127950814	+	Silent	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CYP27C1-90	NM_001001665	exon7	c.C858A	p.A286A	CTCCTTGGCCCGA	.	124	34	137	4	.	0	0	0	0	0
CHRNA1	1134	broad.mit.edu;ucsc.edu	37	2	175614800	175614800	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CHRNA1-518	NM_001039523	exon8	c.C951T	p.P317P	AATCAAGGGCACA	.	132	22	87	2	.	0	0	0	0	0
SIRPA	140885	bcgsc.ca	37	20	1902142	1902142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SIRPA-227	NM_001040022	exon4	c.A538G	p.I180V	AGAGACATCACCC	.	316	79	383	2	.	70	32	38	0	0
FRG1B	284802	bcgsc.ca	37	20	29628236	29628236	+	RNA	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FRG1B-22	.	.	.	.	AAAATGGCTTTGT	.	778	17	771	12	.	0	0	0	0	0
BPIFB6	128859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31627181	31627181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_174897	exon10	c.C929A	p.P310H	CAAAGCCCTTGAC	.	88	33	112	0	.	0	0	0	0	0
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43108944	43108944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TTPAL-153	NM_001039199	exon2	c.A305G	p.Y102C	TCAACTACCACAG	.	153	49	167	0	.	2	1	1	0	0
ADA	100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43251682	43251682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ADA-653	NM_000022	exon7	c.C644T	p.A215V	TCCCCGGCGTGGA	.	98	20	112	0	.	14	10	4	0	0
KCNE2	9992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35743124	35743124	+	Missense_Mutation	SNP	C	C	T	rs199473367		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	KCNE2-68	NM_172201	exon2	c.C347T	p.A116V	TTGGTGCGGCTGG	.	99	26	97	0	.	4	4	0	0	0
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	77671536	77671536	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ROBO2-328	NM_002942	exon23	c.A3713T	p.D1238V	CACTGGACCAGAC	.	48	19	70	0	.	0	0	0	0	0
MRPL3	11222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	131190046	131190046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MRPL3-90	NM_007208	exon7	c.C707A	p.T236N	CTGTGGGTTTTCG	.	95	17	100	1	.	95	55	40	0	0
AMOTL2	51421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134078995	134078995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AMOTL2-135	NM_016201	exon7	c.T1836G	p.N612K	ACCCTCATTGAAG	.	62	19	78	0	.	50	28	22	0	0
SLC25A36	55186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140675502	140675502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SLC25A36-90	NM_018155	exon2	c.G175A	p.V59I	AACCGAGTAGTGT	.	73	24	85	0	.	10	5	5	0	0
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151107816	151107816	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MED12L-576	NM_053002	exon36	c.T5396G	p.I1799S	CGCCTATCTCCTC	.	88	37	101	0	.	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195516343	195516343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MUC4-90	NM_018406	exon2	c.G2108T	p.G703V	GTGTGACCATCCC	.	84	19	115	0	.	0	0	0	0	0
FAM184B	27146	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17635486	17635486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAM184B-23	NM_015688	exon17	c.G2915T	p.S972I	ACGCGGCTGGGCA	.	82	20	72	0	.	5	1	4	0	0
TLR10	81793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	38776735	38776735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TLR10-522	NM_001017388	exon2	c.C477A	p.F159L	TTTCTGGAAATCT	.	43	9	41	0	.	0	0	0	0	0
MUC7	4589	ucsc.edu;bcgsc.ca	37	4	71347168	71347168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MUC7-93	NM_001145007	exon4	c.C707T	p.A236V	CCACAGCTGCCCC	.	547	131	689	2	.	0	0	0	0	0
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119952865	119952865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SYNPO2-92	NM_001128934	exon4	c.T2935A	p.F979I	TTTACTTTCCAAC	.	140	28	129	0	.	2	2	0	0	0
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	183245385	183245385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_001080477	exon1	c.C212A	p.A71E	GAGAAGCAGACGA	.	66	9	58	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187517964	187517964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAT1-34	NM_005245	exon25	c.G12730C	p.D4244H	GTATGTCTGAGTA	.	97	26	90	0	.	45	24	21	0	0
TRIP13	9319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	908120	908120	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TRIP13-90	NM_004237	exon8	c.C690T	p.T230T	GGTAACCAAGATG	.	123	38	96	0	.	0	0	0	0	0
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	21752166	21752166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CDH12-92	NM_004061	exon15	c.A2065G	p.I689V	TGCGAATTTTGTT	.	221	60	203	0	.	0	0	0	0	0
IL31RA	133396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55212822	55212822	+	Silent	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	IL31RA-91	NM_139017	exon15	c.T2169C	p.G723G	TTCTGGTCAAAGT	.	162	47	158	1	.	0	0	0	0	0
KIF2A	3796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	61662304	61662304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	KIF2A-228	NM_001098511	exon16	c.A1642T	p.N548Y	TATGCAAATAGGT	.	132	31	126	1	.	0	0	0	0	0
NDST1	3340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149921206	149921206	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NDST1-136	NM_001543	exon9	c.C1824T	p.L608L	GCTCCTCATCATC	.	91	30	104	1	.	23	18	5	0	0
CMAHP	8418	bcgsc.ca	37	6	25108924	25108924	+	RNA	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	.	.	.	.	CTACTATATTGAG	.	73	4	98	0	.	9	9	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56504731	56504731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DST-523	NM_001723	exon5	c.G1004A	p.S335N	ACCTCACTGATTT	.	81	30	98	0	.	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	72960096	72960096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RIMS1-144	NM_014989	exon13	c.C2305G	p.L769V	ACAGATCTACCTG	.	90	14	71	0	.	0	0	0	0	0
VGLL2	245806	hgsc.bcm.edu	37	6	117591730	117591730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	VGLL2-90	NM_182645	exon3	c.G416T	p.R139L	GCCAGCGCAGCTT	.	53	4	72	0	.	0	0	0	0	0
C6orf170	221322	hgsc.bcm.edu	37	6	121433801	121433801	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C6orf170-92	NM_152730	exon29	c.C3174A	p.C1058X	TTGCAGGCAGACT	.	67	4	54	0	.	0	0	0	0	0
FNDC1	84624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159655428	159655428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FNDC1-138	NM_032532	exon11	c.T3884G	p.M1295R	CCCCGATGCTGTC	.	136	45	199	1	.	0	0	0	0	0
ACTB	60	broad.mit.edu	37	7	5567474	5567474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ACTB-226	NM_001101	exon6	c.A1033C	p.I345L	CCAGGATGGAGCC	.	105	16	143	10	.	4419	4318	95	3	3
THSD7A	221981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	11500346	11500346	+	Missense_Mutation	SNP	C	C	T	rs199705914		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	THSD7A-71	NM_015204	exon11	c.G2548A	p.V850M	GTTGCACGCTCCA	.	62	9	68	0	C|0.999;T|0.000	1	1	0	0	0
TRIP6	7205	broad.mit.edu;bcgsc.ca	37	7	100466248	100466248	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TRIP6-514	NM_003302	exon4	c.C495T	p.G165G	GGCTGGCCCAGCC	.	78	26	54	1	.	104	64	40	0	0
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94805453	94805453	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TMEM67-92	NM_153704	exon16	c.G1603C	p.A535P	GGGCTAGCTGTTT	.	116	31	101	0	.	2	2	0	0	0
FAM91A1	157769	broad.mit.edu	37	8	124796777	124796777	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAM91A1-91	NM_144963	exon9	c.G771C	p.K257N	CTATAAGATATTT	.	32	6	40	0	.	14	5	9	0	0
DNAJC25	548645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114412019	114412019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DNAJC25-22	NM_001015882	exon3	c.A776G	p.Y259C	GCTCATATATAGT	.	178	41	138	0	.	18	6	12	0	0
ANGPTL2	23452	broad.mit.edu	37	9	129870363	129870363	+	Silent	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ANGPTL2-90	NM_012098	exon2	c.A648C	p.P216P	GGGGGGTGGCTGG	.	68	10	76	10	.	35	33	2	0	0
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41043810	41043810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	USP9X-563	NM_001039591	exon23	c.C3440T	p.A1147V	GGGGTGCCTACCT	.	143	72	154	0	.	16	4	12	0	0
WDR13	64743	ucsc.edu;bcgsc.ca	37	X	48462761	48462761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	WDR13-132	NM_017883	exon8	c.G1256A	p.R419H	CCTTCCGCCAGGG	.	40	4	67	0	.	290	288	1	1	0
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118977251	118977251	+	Silent	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	UPF3B-133	NM_023010	exon5	c.A483G	p.R161R	AAACTTTCTATAT	.	31	17	23	0	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158639217	158639217	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SPTA1-142	NM_003126	exon14	c.1814delC	p.A605fs	.	.	73	19	65	0	.	0	0	0	0	0
IL25	64806	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	IL25-91	NM_022789	exon2	c.502_503del	p.168_168del	TTAGCTTGTGTGT	.	138	7	179	0	.	0	0	0	0	0
POLDIP2	26073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	26675218	26675218	+	Targeted_Region	DEL	A	A	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	.	.	.	.	.	.	100	20	102	0	.	0	0	0	0	0
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	2610806	2610806	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NDC80-91	NM_006101	exon16	c.1737delA	p.G579fs	.	.	157	36	151	0	.	0	0	0	0	0
NCAN	1463	broad.mit.edu	37	19	19360601	19360603	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NCAN-94	NM_004386	exon15	c.3847_3849del	p.1283_1283del	CGGCGACACCACC	.	193	7	197	0	.	0	0	0	0	0
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	39671646	39671649	+	Frame_Shift_Del	DEL	TTGA	TTGA	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	KCNJ15-157	NM_002243	exon4	c.463_466del	p.155_156del	.	.	105	28	115	0	.	0	0	0	0	0
SMC4	10051	hgsc.bcm.edu;bcgsc.ca	37	3	160134136	160134136	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SMC4-291	NM_005496	exon9	c.1370delA	p.E457fs	.	.	230	36	190	0	.	0	0	0	0	0
SLC12A2	6558	broad.mit.edu	37	5	127420207	127420209	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SLC12A2-94	NM_001046	exon1	c.561_563del	p.187_188del	GCACTCCGGCGGC	.	187	9	181	0	.	0	0	0	0	0
NCR2	9436	broad.mit.edu	37	6	41303645	41303647	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NCR2-91	NM_004828	exon1	c.31_33del	p.11_11del	CTGCTACTGCTGC	.	401	8	71	0	.	0	0	0	0	0
AKD1	221264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	109977966	109977966	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AKD1-91	NM_145025	exon8	c.752delC	p.T251fs	.	.	103	32	96	0	.	0	0	0	0	0
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	112724144	112724146	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GPR85-91	NM_001146265	exon3	c.631_633del	p.211_211del	.	.	63	14	84	0	.	0	0	0	0	0
LSM1	27257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38027436	38027436	+	Splice_Site	DEL	C	C	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LSM1-90	NM_014462	exon4	c.116-1G>-	.	.	.	129	33	122	0	.	0	0	0	0	0
GPR174	84636	hgsc.bcm.edu;bcgsc.ca	37	X	78426874	78426874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GPR174-130	NM_032553	exon1	c.370delT	p.F124fs	.	.	144	59	128	0	.	0	0	0	0	0
EFCAB13	124989	hgsc.bcm.edu;bcgsc.ca	37	17	45468874	45468875	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_152347	exon15	c.1654_1655insG	p.C552fs	.	.	342	63	277	0	.	0	0	0	0	0
C19orf40	91442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33464971	33464972	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C19orf40-90	NM_152266	exon4	c.249_250insA	p.N83fs	.	.	170	43	145	0	.	0	0	0	0	0
DOK7	285489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	3478120	3478121	+	Frame_Shift_Ins	INS	-	-	GGCTA	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DOK7-91	NM_001164673	exon4	c.383_384insGGCTA	p.P128fs	.	.	86	21	91	0	.	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	6663046	6663047	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SRD5A1-90	NM_001047	exon4	c.680_681insT	p.C227fs	.	.	91	23	92	0	.	0	0	0	0	0
RBM28	55131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	127958110	127958111	+	In_Frame_Ins	INS	-	-	GAC	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RBM28-92	NM_018077	exon15	c.1613_1614insGTC	p.Q538delinsRQ	.	.	88	19	101	0	.	0	0	0	0	0
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44116985	44116986	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LRPPRC-93	NM_133259	exon37	c.G4015C	p.A1339L	ACAGTGCTTTAGC	.	217.0	48.0	244.0	0.0	.	0	0	0	0	0