Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ACTRT2	140625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2938841	2938841	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACTRT2-90	NM_080431	exon1	c.C591A	p.L197L	GCTGCTCCTGGCC	.	189	71	243	1	.	0	0	0	0	0
TMOD4	29765	broad.mit.edu	37	1	151146999	151146999	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TMOD4-91	NM_013353	exon3	c.A148T	p.R50X	GTTGTCTTAGTCC	.	39	3	42	0	.	0	0	0	0	0
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	164761953	164761953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PBX1-659	NM_001204963	exon3	c.C488T	p.T163M	ACCATACGGAGCT	.	60	30	72	0	.	0	0	0	0	0
SUSD4	55061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223438095	223438095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SUSD4-68	NM_017982	exon5	c.C601T	p.P201S	CCACCGGGAAGGA	.	88	18	102	0	.	0	0	0	0	0
SORCS1	114815	ucsc.edu;bcgsc.ca	37	10	108371705	108371705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SORCS1-153	NM_001206572	exon22	c.G2997T	p.R999S	GATGTCCCTCCTC	.	151	34	166	3	.	0	0	0	0	0
C10orf118	55088	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115917414	115917414	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	C10orf118-92	NM_018017	exon3	c.C658T	p.Q220X	GCTCCTGATGCTT	.	24	8	38	0	.	0	0	0	0	0
TTC40	54777	bcgsc.ca	37	10	134722730	134722730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_001200049	exon21	c.A2668G	p.S890G	CCGAGCTGACATC	.	31	4	50	0	.	0	0	0	0	0
EPS8L2	64787	broad.mit.edu	37	11	726471	726471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	EPS8L2-91	NM_022772	exon19	c.G1921T	p.A641S	GCCAAGGCCTTCA	.	75	7	34	0	.	0	0	0	0	0
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58601915	58601915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GLYATL2-92	NM_145016	exon6	c.A872G	p.K291R	TATTTCTTGGGGG	.	37	11	41	0	.	0	0	0	0	0
PCF11	51585	broad.mit.edu	37	11	82879804	82879804	+	Silent	SNP	A	A	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PCF11-23	NM_015885	exon8	c.A2427T	p.P809P	GGGGCCACAAGGT	.	174	5	183	1	.	1	1	0	0	0
MAML2	84441	broad.mit.edu;bcgsc.ca	37	11	95825356	95825356	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.A1839G	p.Q613Q	TTGCTGTTGCTGC	.	110	9	123	1	.	47	10	37	0	0
MAML2	84441	hgsc.bcm.edu;bcgsc.ca	37	11	95825395	95825395	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.G1800A	p.Q600Q	CTGCTGCTGCTGC	.	137	16	159	0	.	1412	1345	64	2	1
SLC38A4	55089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	47170779	47170779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SLC38A4-93	NM_001143824	exon12	c.G1082A	p.R361Q	TTTCTCCGGGACC	.	64	16	87	0	.	0	0	0	0	0
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64808728	64808728	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	XPOT-652	NM_007235	exon3	c.C102A	p.A34A	AGATGCCTGGCAG	.	37	5	31	0	.	8	6	2	0	0
METAP2	10988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	95907438	95907438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	METAP2-90	NM_006838	exon11	c.A1195G	p.T399A	CCAAGAACAAAAC	.	88	21	69	0	.	1	1	0	0	0
PABPC3	5042	ucsc.edu	37	13	25672007	25672007	+	Silent	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PABPC3-72	NM_030979	exon1	c.A1671G	p.L557L	AATGTTAGGTGAA	.	182	1	154	1	.	1	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32841388	32841388	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FRY-142	NM_023037	exon55	c.C8028A	p.A2676A	CGCAGCCTGTGAC	.	72	3	80	0	.	4	3	1	0	0
RALGAPA1	253959	ucsc.edu;bcgsc.ca	37	14	36103887	36103887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	RALGAPA1-138	NM_194301	exon32	c.C4370T	p.A1457V	ACAGATGCCAAAT	.	111	21	136	3	.	3	3	0	0	0
SPTBN5	51332	ucsc.edu	37	15	42147764	42147764	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SPTBN5-91	NM_016642	exon54	c.C9096T	p.S3032S	CTTCCTGCTCTCC	.	41	4	48	0	.	0	0	0	0	0
DAPK2	23604	broad.mit.edu;bcgsc.ca	37	15	64217047	64217047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DAPK2-333	NM_014326	exon9	c.A826G	p.I276V	CTTGGATTGTGAG	.	151	6	246	0	.	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369367	65369367	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_001101362	exon1	c.C214T	p.L72L	CCGGCGCTGGCGG	.	7	5	0	0	.	0	0	0	0	0
FBXO22	26263	broad.mit.edu	37	15	76225142	76225142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FBXO22-658	NM_147188	exon7	c.C911A	p.A304D	CTGAGGCTGCGAT	.	115	7	142	2	.	15	15	0	0	0
CDR2	1039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	22358803	22358803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CDR2-91	NM_001802	exon5	c.T848C	p.F283S	TCTTTGAAAGGAA	.	64	15	43	0	.	45	18	27	0	0
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30794425	30794425	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_001080417	exon3	c.C1224T	p.G408G	GCTCTTGCCGCAC	.	179	51	184	0	.	4	2	2	0	0
ZNF646	9726	broad.mit.edu	37	16	31087650	31087650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ZNF646-153	NM_014699	exon2	c.A5G	p.E2G	CCATGGAGGACAC	.	107	3	77	0	.	0	0	0	0	0
MMP15	4324	broad.mit.edu	37	16	58074478	58074478	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MMP15-713	NM_002428	exon5	c.C786A	p.G262G	GCTGGGCCACGCG	.	111	5	112	1	.	11	11	0	0	0
NFAT5	10725	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69727578	69727578	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NFAT5-90	NM_138713	exon13	c.C3850T	p.Q1284X	CAACAACAGAGCA	.	87	23	115	1	.	5	5	0	0	0
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	83994295	83994295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	OSGIN1-68	NM_182981	exon4	c.G326A	p.W109X	TCACCTGGAAGCA	.	185	62	189	0	.	5	4	1	0	0
MTHFSD	64779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	86565821	86565821	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MTHFSD-90	NM_001159377	exon8	c.C948T	p.D316D	ACGGGCGTCCCCG	.	143	25	131	0	.	0	0	0	0	0
MYH10	4628	ucsc.edu;bcgsc.ca	37	17	8424548	8424548	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MYH10-92	NM_001256012	exon18	c.C2013T	p.G671G	TGCGGAGCCAAAA	.	185	42	222	2	.	5	3	2	0	0
GIT1	28964	bcgsc.ca	37	17	27902918	27902918	+	Splice_Site	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GIT1-251	NM_014030	exon17	c.1666-2A>G	.	CGGATCTGAAACC	.	126	5	128	0	.	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	84	21	56	0	.	0	0	0	0	0
ACLY	47	ucsc.edu	37	17	40028342	40028342	+	Silent	SNP	A	A	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACLY-228	NM_001096	exon24	c.T2736A	p.I912I	CGCACAAATGATG	.	143	6	173	0	.	45	40	5	0	0
ACSF2	80221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48541577	48541577	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACSF2-68	NM_025149	exon10	c.1139-2A>G	.	TGATTCAGGTGTC	.	129	44	150	0	.	1	0	1	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11134286	11134286	+	Silent	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SMARCA4-1523	NM_003072	exon20	c.C2952G	p.V984V	GGAAGTCGAGGCC	.	142	26	141	0	.	33	24	9	0	0
NCCRP1	342897	hgsc.bcm.edu	37	19	39687743	39687743	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NCCRP1-91	NM_001001414	exon1	c.C121T	p.L41L	CCACCACTGCCCT	.	9	5	0	0	.	0	0	0	0	0
DHX34	9704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47856826	47856826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DHX34-231	NM_014681	exon2	c.T539C	p.V180A	ACCAGGTGGTGGT	.	56	19	63	1	.	2	2	0	0	0
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55143956	55143956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	LILRB1-137	NM_001081637	exon6	c.A703G	p.I235V	GGTCCTATCGTGG	.	264	83	333	0	.	9	9	0	0	0
CAD	790	broad.mit.edu	37	2	27462296	27462296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CAD-295	NM_004341	exon33	c.G5351A	p.R1784H	CCGTCCGCCGTGT	.	151	5	159	0	.	24	21	3	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233651899	233651899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GIGYF2-28	NM_001103147	exon11	c.G638C	p.G213A	CAGTAGGGAGAAA	.	92	16	78	0	.	3	0	3	0	0
CST1	1469	broad.mit.edu	37	20	23728528	23728528	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CST1-91	NM_001898	exon3	c.G351A	p.L117L	AGAGCACAACTGT	.	138	5	157	1	.	0	0	0	0	0
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42984469	42984469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HNF4A-227	NM_001030003	exon1	c.G25T	p.G9W	CCCCTCGGGGCTC	.	75	16	66	0	.	0	0	0	0	0
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24628898	24628898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GGT5-71	NM_001099781	exon4	c.C489G	p.F163L	GGGCTGGAACAGC	.	193	36	122	0	.	1	1	0	0	0
TTC28	23331	broad.mit.edu	37	22	28504235	28504235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_001145418	exon7	c.C1598A	p.A533E	TTGACCGCCTGGT	.	88	9	97	2	.	2	2	0	0	0
CSNK1E	1454	broad.mit.edu	37	22	38699223	38699223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CSNK1E-1193	NM_001894	exon3	c.C107T	p.A36V	TTGATGGCGACTT	.	57	4	40	0	.	18	18	0	0	0
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13438880	13438880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NUP210-256	NM_024923	exon3	c.A413G	p.K138R	TGGATCTTCAGCT	.	85	25	78	0	.	4	1	3	0	0
NME6	10201	broad.mit.edu	37	3	48336157	48336157	+	Silent	SNP	T	T	C	rs148416956	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NME6-115	NM_005793	exon6	c.A555G	p.V185V	TCCAGCTACATAG	.	124	3	110	0	T|1.000;A|0.000	12	12	0	0	0
RBM5	10181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50147868	50147868	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	RBM5-278	NM_005778	exon16	c.T1335C	p.P445P	TTCCCCTACTGGT	.	149	36	180	0	.	32	14	18	0	0
GOLIM4	27333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	167747034	167747034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GOLIM4-291	NM_014498	exon11	c.A1490G	p.Q497R	ATTCCCTGGTCCT	.	90	6	105	0	.	9	9	0	0	0
HTT	3064	broad.mit.edu	37	4	3123099	3123099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HTT-281	NM_002111	exon9	c.A1213C	p.T405P	CAGCTCACCGCTG	.	142	5	138	1	.	3	3	0	0	0
EVC	2121	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	5754739	5754739	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	EVC-92	NM_153717	exon9	c.G1275A	p.Q425Q	GCAGCAGCACAAG	.	134	43	157	2	.	32	10	22	0	0
KIAA0232	9778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6860177	6860177	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	KIAA0232-92	NM_014743	exon6	c.G462A	p.E154E	GTTAGAGGGGTCT	.	292	86	398	2	.	2	1	1	0	0
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40818110	40818110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	APBB2-92	NM_004307	exon18	c.A2279T	p.X760L	TGCAGCTATGGCA	.	99	22	98	0	.	6	4	2	0	0
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48536646	48536646	+	Silent	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FRYL-69	NM_015030	exon49	c.T6621C	p.S2207S	CAATAGACTATAA	.	67	10	66	0	.	4	4	0	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95204298	95204298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SMARCAD1-229	NM_001128429	exon22	c.C2759G	p.T920S	TTAATACCGATAT	.	101	3	138	0	.	5	5	0	0	0
BBS7	55212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122774226	122774226	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	BBS7-91	NM_018190	exon8	c.A734T	p.D245V	AAGCTGTCAATAC	.	193	58	215	1	.	5	3	2	0	0
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131602211	131602211	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PDLIM4-91	NM_003687	exon3	c.C300T	p.H100H	GGCACACAGGATC	.	235	70	251	0	.	1	1	0	0	0
SLC22A4	6583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131647952	131647952	+	Silent	SNP	A	A	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SLC22A4-90	NM_003059	exon2	c.A492C	p.S164S	GCTGTCAGACAGG	.	56	18	75	0	.	0	0	0	0	0
TIFAB	497189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134785315	134785315	+	Silent	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TIFAB-22	NM_001099221	exon2	c.C315G	p.V105V	GAAGGAGACCCTG	.	133	24	148	0	.	0	0	0	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710540	140710540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PCDHGA1-137	NM_018912	exon1	c.G289T	p.A97S	CTCTGCGCTCAGA	.	113	9	126	1	.	4	4	0	0	0
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161116041	161116041	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GABRA6-163	NM_000811	exon4	c.T312C	p.N104N	TCTGAATAATTTG	.	85	17	65	0	.	0	0	0	0	0
DTNBP1	84062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	15523339	15523339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DTNBP1-90	NM_032122	exon10	c.G923C	p.R308P	ATGTCCCGGGTGG	.	197	32	163	0	.	29	13	16	0	0
ACOT13	55856	broad.mit.edu;bcgsc.ca	37	6	24701750	24701750	+	Silent	SNP	A	A	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACOT13-90	NM_018473	exon3	c.A330T	p.G110G	GCAAGGAAAAACA	.	213	8	228	0	.	48	48	0	0	0
HIST1H3J	8356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27858516	27858516	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HIST1H3J-69	NM_003535	exon1	c.A55C	p.K19Q	GCTGCTTCCGCGG	.	89	25	111	0	.	0	0	0	0	0
DNAH8	1769	broad.mit.edu	37	6	38875811	38875811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DNAH8-615	NM_001206927	exon64	c.G9428A	p.R3143H	TACCTCGCCATCC	.	80	4	97	0	.	0	0	0	0	0
ENPP1	5167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132171207	132171207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ENPP1-95	NM_006208	exon3	c.A391C	p.N131H	CTTGGAAACTGCT	.	158	48	203	1	.	0	0	0	0	0
MICALL2	79778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1477990	1477990	+	Splice_Site	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MICALL2-90	NM_182924	exon12	c.2123-1G>C	.	GTCTCCCTGGAGA	.	160	36	192	2	.	4	1	3	0	0
CBLL1	79872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107398636	107398636	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CBLL1-229	NM_024814	exon6	c.C489T	p.L163L	TTCTCTCTTCATG	.	152	33	143	1	.	9	5	4	0	0
DNAJB9	4189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	108212287	108212287	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DNAJB9-226	NM_012328	exon2	c.G117A	p.E39E	ATCAGAGCGCCAA	.	137	43	131	0	.	29	14	15	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497770	1497770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DLGAP2-22	NM_004745	exon2	c.G911A	p.R304H	CCTACCGCAAGAG	.	151	5	151	2	.	0	0	0	0	0
NEFM	4741	broad.mit.edu	37	8	24771576	24771576	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEFM-577	NM_005382	exon1	c.C270T	p.P90P	CGGACCCGGCGGC	.	144	4	118	1	.	0	0	0	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144809730	144809730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FAM83H-92	NM_198488	exon5	c.C1901G	p.A634G	AAGGCTGCTGGGA	.	12	6	3	0	.	3	0	3	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001217	145001217	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PLEC-141	NM_201380	exon29	c.G4284A	p.A1428A	AAGCTGCGCCTTG	.	69	4	64	0	.	20	20	0	0	0
CDKN2A	1029	hgsc.bcm.edu	37	9	21971184	21971184	+	Missense_Mutation	SNP	T	T	G	rs201208890		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CDKN2A-23992	NM_058195	exon2	c.A217C	p.S73R	CGCCACTCGGGCG	.	34	18	4	2	.	0	0	0	0	0
PIP5K1B	8395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71509346	71509346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PIP5K1B-240	NM_003558	exon8	c.T563C	p.M188T	TGGTGATGAACAA	.	216	53	227	2	.	4	1	3	0	0
TLR4	7099	broad.mit.edu	37	9	120475890	120475890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TLR4-577	NM_138554	exon3	c.T1484C	p.L495P	CAGAGCTGAGAAA	.	71	3	94	0	.	2	2	0	0	0
SH3KBP1	30011	hgsc.bcm.edu;bcgsc.ca	37	X	19560045	19560045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SH3KBP1-130	NM_031892	exon16	c.G1890T	p.Q630H	TCACTTCTGCTGG	.	81	40	84	0	.	0	0	0	0	0
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70618524	70618524	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TAF1-900	NM_004606	exon24	c.G3783A	p.K1261K	GGAAAAGGAGAAG	.	129	74	157	0	.	3	2	1	0	0
ARMCX5	64860	broad.mit.edu;bcgsc.ca	37	X	101857944	101857944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ARMCX5-131	NM_022838	exon3	c.G875T	p.G292V	AGTATGGGCCTAA	.	72	5	69	0	.	0	0	0	0	0
H2BFM	286436	broad.mit.edu	37	X	103294936	103294936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	H2BFM-109	NM_001164416	exon1	c.G393T	p.K131N	GGGCAAGCTCGCC	.	76	4	67	2	.	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120183026	120183026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GLUD2-131	NM_012084	exon1	c.T1488G	p.S496R	AGACAGTATATCG	.	107	1	89	0	.	152	2	150	0	0
MAML2	84441	broad.mit.edu	37	11	95825392	95825392	+	Frame_Shift_Del	DEL	C	C	-	rs149006316	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.1803delG	p.Q601fs	CTGCTGCTGCTGC	.	135	7	152	0	-|0.034;TGC|0.966	0	0	0	0	0
MAML2	84441	broad.mit.edu	37	11	95825394	95825395	+	Frame_Shift_Del	DEL	GC	GC	-	rs149006316	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.1800_1801del	p.600_601del	GCTGCTGCTGCTG	.	135	7	158	0	-|0.034;TGC|0.966	0	0	0	0	0
METTL7A	25840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	51319010	51319030	+	In_Frame_Del	DEL	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	METTL7A-90	NM_014033	exon1	c.189_209del	p.63_70del	.	.	80	12	71	0	.	0	0	0	0	0
RFC5	5985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	118462664	118462664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	RFC5-227	NM_007370	exon6	c.430delA	p.K144fs	.	.	53	15	48	0	.	0	0	0	0	0
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24528535	24528547	+	Frame_Shift_Del	DEL	CATCAATGCCCTG	CATCAATGCCCTG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CATCAATGCCCTG	CATCAATGCCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	LRRC16B-139	NM_138360	exon21	c.1683_1695del	p.561_565del	.	.	154	40	288	0	.	0	0	0	0	0
ZNF225	7768	broad.mit.edu	37	19	44636876	44636878	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_013362	exon5	c.2109_2111del	p.703_704del	ATTTTTAAATGAC	.	101	8	129	0	.	0	0	0	0	0
ZNF225	7768	hgsc.bcm.edu	37	19	44636876	44636889	+	Frame_Shift_Del	DEL	AAATGACACATAAC	AAATGACACATAAC	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAATGACACATAAC	AAATGACACATAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_013362	exon5	c.2109_2364del	p.703_707del	.	.	91	16	117	0	.	0	0	0	0	0
ZNF225	7768	broad.mit.edu;bcgsc.ca	37	19	44636880	44636885	+	In_Frame_Del	DEL	GACACA	GACACA	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GACACA	GACACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_013362	exon5	c.2113_2118del	p.705_706del	TTAAATGACACAT	.	88	8	123	0	.	0	0	0	0	0
NEUROD1	4760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	182543048	182543051	+	Frame_Shift_Del	DEL	GGTG	GGTG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGTG	GGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEUROD1-91	NM_002500	exon2	c.537_540del	p.179_180del	.	.	80	22	75	0	.	0	0	0	0	0
HIST1H2AL	8332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27833355	27833357	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HIST1H2AL-68	NM_003511	exon1	c.223_225del	p.75_75del	.	.	217	47	216	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151859497	151859497	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MLL3-1398	NM_170606	exon43	c.11165delA	p.K3722fs	.	.	80	23	75	0	.	0	0	0	0	0
TCEANC	170082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	13680806	13680808	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TCEANC-41	NM_152634	exon4	c.269_271del	p.90_91del	.	.	58	33	64	0	.	0	0	0	0	0
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	94975986	94975987	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TMCC3-92	NM_020698	exon2	c.407_408insT	p.Y136fs	.	.	73	12	100	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885571	29885572	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEFH-90	NM_021076	exon4	c.1942_1943insCCCCTGAGAAGGCCAAGT	p.S648delinsSPEKAKS	.	.	223	71	173	0	.	0	0	0	0	0
HRCT1	646962	broad.mit.edu	37	9	35906600	35906601	+	Frame_Shift_Ins	INS	-	-	A	rs79156963	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HRCT1-22	NM_001039792	exon1	c.316_317insA	p.P106fs	CACCACCCCCACC	.	8	3	11	0	.	0	0	0	0	0
HRCT1	646962	broad.mit.edu	37	9	35906601	35906602	+	Frame_Shift_Ins	INS	-	-	CA	rs143611048	by1000genomes;alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HRCT1-22	NM_001039792	exon1	c.317_318insCA	p.P106fs	ACCACCCCCACCG	.	8	3	12	0	.	0	0	0	0	0
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	19560042	19560043	+	Splice_Site	INS	-	-	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SH3KBP1-130	NM_001184960	exon12	c.1178+1->A	.	.	.	81	41	81	0	.	0	0	0	0	0
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7526000	7526001	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CD163L1-100	NM_174941	exon14	c.G3645A	p.H1226N	GATATGCGTTTTA	.	280.0	46.0	332.0	0.0	.	0	0	0	0	0