Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 HP1BP3 50809 bcgsc.ca 37 1 21071364 21071364 + Missense_Mutation SNP T T C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . HP1BP3-91 NM_016287 exon13 c.A1588G p.S530G TTGCACTGGTTGC . 75 30 102 3 . 86 48 38 0 0 DHX9 1660 ucsc.edu;bcgsc.ca 37 1 182856445 182856445 + Missense_Mutation SNP C C G novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . DHX9-92 NM_001357 exon28 c.C3689G p.S1230C GCAACTCTGGAGG . 110 42 163 4 . 166 73 93 0 0 SKIDA1 387640 broad.mit.edu 37 10 21805502 21805502 + Missense_Mutation SNP T T C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . . NM_207371 exon4 c.A1250G p.E417G TCTCCCTCCTCCT . 46 3 64 1 . 0 0 0 0 0 TM7SF2 7108 broad.mit.edu 37 11 64883476 64883476 + Missense_Mutation SNP A A G novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . TM7SF2-91 NM_003273 exon10 c.A1208G p.Q403R CCTGGCAGGAGTA . 28 7 49 1 . 113 43 70 0 0 P2RY2 5029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 72945937 72945937 + Missense_Mutation SNP C C T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . P2RY2-503 NM_176071 exon3 c.C733T p.R245C TCCGTGCGCACCA . 33 13 51 0 . 0 0 0 0 0 SMARCC2 6601 broad.mit.edu 37 12 56558430 56558430 + Silent SNP A A C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . SMARCC2-229 NM_003075 exon27 c.T3225G p.G1075G AGCATTACCCGCC . 66 16 47 17 . 28 26 2 0 0 SLITRK5 26050 ucsc.edu;bcgsc.ca 37 13 88327922 88327922 + Missense_Mutation SNP G G C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . SLITRK5-94 NM_015567 exon2 c.G279C p.L93F CCTTTTGAACCGT . 210 66 276 3 . 0 0 0 0 0 OR4N2 390429 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 20296302 20296302 + Missense_Mutation SNP C C A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . OR4N2-71 NM_001004723 exon1 c.C695A p.A232E CTGAGGCAAAAAA . 127 21 172 1 . 0 0 0 0 0 SETD3 84193 bcgsc.ca 37 14 99925507 99925507 + Missense_Mutation SNP A A T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . SETD3-514 NM_032233 exon5 c.T361A p.L121I CCCATAAAAACAA . 244 98 308 5 . 65 41 24 0 0 EXOC3L4 91828 broad.mit.edu 37 14 103570687 103570687 + Silent SNP G G A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . EXOC3L4-23 NM_001077594 exon4 c.G1245A p.Q415Q GCTGCAGGGCCTC . 59 3 97 0 . 16 16 0 0 0 KIF26A 26153 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 104639376 104639376 + Missense_Mutation SNP G G A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . KIF26A-24 NM_015656 exon8 c.G1483A p.A495T CCCTGCGCCATCT . 76 6 84 0 . 0 0 0 0 0 CNOT1 23019 broad.mit.edu 37 16 58566190 58566190 + Missense_Mutation SNP T T C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . CNOT1-95 NM_016284 exon41 c.A6005G p.N2002S GGTGCATTGAGTT . 141 5 159 0 . 72 69 3 0 0 KRTAP4-11 653240 broad.mit.edu 37 17 39274432 39274432 + Missense_Mutation SNP C C T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . . NM_033059 exon1 c.G136A p.V46M TGGACACACAGCA . 86 5 77 2 . 0 0 0 0 0 TRAPPC8 22878 broad.mit.edu 37 18 29497627 29497627 + Missense_Mutation SNP G G T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . TRAPPC8-159 NM_014939 exon3 c.C356A p.T119N GGAGTAGTGGCTA . 60 3 54 0 . 0 0 0 0 0 MEF2BNB-MEF2B 4207 broad.mit.edu 37 19 19258537 19258537 + Silent SNP A A C rs200716984 TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . MEF2BNB-MEF2B-522 NM_005919 exon6 c.T363G p.G121G CGGATCACCCCCT . 36 12 48 10 . 11 10 1 0 0 GRIK5 2901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 42525580 42525580 + Missense_Mutation SNP G G A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . GRIK5-90 NM_002088 exon14 c.C1744T p.R582C GGGGGCGTGCCCG . 62 16 54 0 . 0 0 0 0 0 CRX 1406 broad.mit.edu 37 19 48343201 48343201 + Missense_Mutation SNP G G T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . CRX-153 NM_000554 exon4 c.G877T p.A293S CAGAGTGCCTGGA . 63 5 71 0 . 0 0 0 0 0 ZNF808 388558 broad.mit.edu 37 19 53057180 53057180 + Silent SNP T T C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . . NM_001039886 exon5 c.T1011C p.H337H AATTCATACTGGA . 130 5 135 3 . 19 19 0 0 0 AGBL5 60509 broad.mit.edu 37 2 27276801 27276801 + Missense_Mutation SNP G G T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . AGBL5-154 NM_021831 exon4 c.G425T p.R142L TTCATCGTTTCGT . 90 3 135 0 . 33 33 0 0 0 SPTBN1 6711 ucsc.edu;bcgsc.ca 37 2 54855278 54855278 + Silent SNP G G C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . SPTBN1-140 NM_003128 exon13 c.G1689C p.V563V TGGTGTGGAAGAC . 105 39 126 2 . 60 29 31 0 0 ERCC3 2071 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 128051174 128051174 + Missense_Mutation SNP C C G novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . ERCC3-723 NM_000122 exon2 c.G149C p.G50A TTGGTGCCTGACT . 86 6 153 1 . 16 13 3 0 0 ANKRD30BL 554226 bcgsc.ca 37 2 132919192 132919192 + RNA SNP G G A rs111295191 TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . . . . . . AGAGTCGTTGTTG . 261 10 328 10 . 0 0 0 0 0 OSBPL6 114880 bcgsc.ca 37 2 179255928 179255928 + Silent SNP G G A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . OSBPL6-69 NM_001201480 exon23 c.G2505A p.K835K TGCAAAGTGCATT . 90 35 139 3 . 0 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29625875 29625875 + RNA SNP T T C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . FRG1B-22 . . . . ACAGAATCGCCCT . 268 10 298 6 . 1 1 0 0 0 TTLL12 23170 ucsc.edu;bcgsc.ca 37 22 43569808 43569808 + Nonsense_Mutation SNP G G T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . TTLL12-90 NM_015140 exon9 c.C1254A p.C418X GGGCTTGCAGATC . 26 4 32 0 . 37 37 0 0 0 MUC4 4585 broad.mit.edu 37 3 195488976 195488976 + Missense_Mutation SNP G G A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . MUC4-90 NM_018406 exon14 c.C14494T p.R4832C CCGTGCGGTTCTG . 46 3 50 0 . 0 0 0 0 0 DSPP 1834 hgsc.bcm.edu 37 4 88536553 88536553 + Silent SNP C C T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . DSPP-90 NM_014208 exon5 c.C2739T p.D913D CAGTGACAGCAGT . 114 28 154 0 . 0 0 0 0 0 IL6ST 3572 ucsc.edu 37 5 55237518 55237518 + Missense_Mutation SNP C C T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . IL6ST-290 NM_002184 exon17 c.G2149A p.E717K TTTTTTCCTTTTT . 294 1 283 0 . 20 19 1 0 0 NKX2-5 1482 broad.mit.edu 37 5 172659920 172659920 + Silent SNP C C G novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . NKX2-5-90 NM_004387 exon2 c.G627C p.P209P CGGCGGCGGGGGC . 76 6 85 2 . 0 0 0 0 0 PRIM2 5558 broad.mit.edu;bcgsc.ca 37 6 57393114 57393114 + Missense_Mutation SNP A A G novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . PRIM2-227 . . . . AAAGTCATTCCTA . 96 11 109 1 . 0 0 0 0 0 PHKG1 5260 ucsc.edu;bcgsc.ca 37 7 56151013 56151013 + Missense_Mutation SNP A A C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . PHKG1-424 NM_001258459 exon7 c.T601G p.F201V AGCCAAAGTCTGT . 145 34 125 3 . 0 0 0 0 0 SBDS 51119 ucsc.edu;bcgsc.ca 37 7 66456233 66456233 + Missense_Mutation SNP A A C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . SBDS-523 NM_016038 exon4 c.T515G p.M172R AGCCTCATGTGAG . 170 95 164 3 . 158 59 99 0 0 CACNA2D1 781 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 81588631 81588631 + Missense_Mutation SNP T T G novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . CACNA2D1-96 NM_000722 exon38 c.A3119C p.Y1040S TTTCGGTATCTGG . 167 40 124 1 . 2 1 1 0 0 LMOD2 442721 broad.mit.edu 37 7 123302918 123302918 + Silent SNP T T C novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . LMOD2-68 NM_207163 exon2 c.T1278C p.P426P TCCCCCTCCTCCT . 61 16 62 10 . 0 0 0 0 0 TSPAN33 340348 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 128804350 128804350 + Silent SNP C C A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . TSPAN33-91 NM_178562 exon5 c.C399A p.A133A CAATGCCATTGTG . 76 48 54 0 . 253 94 159 0 0 MAFA 389692 broad.mit.edu 37 8 144511742 144511742 + Missense_Mutation SNP G G A novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . MAFA-278 NM_201589 exon1 c.C835T p.R279W TGTGCCGCTGCTG . 32 3 43 0 . 0 0 0 0 0 INPP5E 56623 ucsc.edu 37 9 139327715 139327715 + Missense_Mutation SNP G G T novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . INPP5E-227 NM_019892 exon4 c.C1051A p.R351S GCAGACGAGTCTC . 23 4 17 0 . 7 7 0 0 0 RBM3 5935 broad.mit.edu 37 X 48434994 48434994 + Splice_Site SNP T T G novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . RBM3-131 NM_006743 exon5 c.413+2T>G . GGCAGGTGGGTAG . 27 5 31 5 . 0 0 0 0 0 MCAM 4162 broad.mit.edu 37 11 119187759 119187761 + In_Frame_Del DEL CAG CAG - novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 CAG CAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . MCAM-137 NM_006500 exon1 c.51_53del p.17_18del CGAGGACAGCAGC . 7 2 10 0 . 0 0 0 0 0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79058942 79058944 + In_Frame_Del DEL GCA GCA - novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 GCA GCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . ADAMTS7-226 NM_014272 exon19 c.3309_3311del p.1103_1104del . . 39 23 40 0 . 0 0 0 0 0 BPTF 2186 broad.mit.edu 37 17 65905759 65905759 + Frame_Shift_Del DEL A A - novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . BPTF-94 NM_004459 exon12 c.3252delA p.P1084fs AAGTCCAAAAAAA . 248 8 170 0 . 0 0 0 0 0 PIK3R4 30849 broad.mit.edu;bcgsc.ca 37 3 130425829 130425831 + In_Frame_Del DEL GAG GAG - novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . PIK3R4-1471 NM_014602 exon11 c.2682_2684del p.894_895del CCAGCAGAGGACT . 114 12 151 0 . 0 0 0 0 0 COPS4 51138 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 83996480 83996480 + Frame_Shift_Del DEL A A - novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . COPS4-226 NM_016129 exon10 c.1118delA p.Q373fs . . 71 15 79 0 . 0 0 0 0 0 TNRC18 84629 broad.mit.edu 37 7 5352666 5352668 + In_Frame_Del DEL GAG GAG - novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . TNRC18-46 NM_001080495 exon27 c.7854_7856del p.2618_2619del GAGGATGAGGAGG . 6 1 4 0 . 0 0 0 0 0 NBPF9 400818 broad.mit.edu 37 1 144615250 144615251 + Frame_Shift_Ins INS - - AA rs202042060 TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . . . . . . CAAAGAGATGTTT . 8 3 5 0 -|0.759;AA|0.241 0 0 0 0 0 LAMB1 3912 broad.mit.edu 37 7 107569606 107569607 + Missense_Mutation DNP TC TC AA novel TCGA-B9-A5W7-01A-11D-A31X-10 TCGA-B9-A5W7-10A-01D-A31X-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 04439867-bb35-44ec-aedd-2cd6183e9b6c 9ef148bd-57c7-41bb-98f3-cb473f34b1ab . LAMB1-97 NM_002291 exon31 c.G4789T p.E1621L GAGCTTCCTTTAC . 254 7 208 1 . 0 0 0 0 0