Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 MTOR 2475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 11273603 11273603 + Silent SNP G G C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . MTOR-1439 NM_004958 exon21 c.C3138G p.T1046T AATTGAGGTGTTC . 187 71 129 0 . 4 2 2 0 0 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 19490300 19490300 + Missense_Mutation SNP C C G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . UBR4-612 NM_020765 exon34 c.G4722C p.K1574N TACATTCTTCTGT . 175 70 214 0 . 0 0 0 0 0 EPHA8 2046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 22927186 22927186 + Silent SNP A A T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . EPHA8-1380 NM_020526 exon14 c.A2421T p.P807P GGCCCCAGAGGCC . 225 82 249 0 . 0 0 0 0 0 MCOLN3 55283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 85487988 85487988 + Missense_Mutation SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . MCOLN3-91 NM_018298 exon10 c.G1191T p.K397N GTTGTACTTTGCA . 52 19 27 0 . 0 0 0 0 0 GBP1 2633 broad.mit.edu 37 1 89528891 89528891 + Silent SNP G G T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . GBP1-92 NM_002053 exon2 c.C27A p.G9G CATTGGGCCTGTC . 193 9 60 0 . 34 34 0 0 0 PIGR 5284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 207105906 207105906 + Nonsense_Mutation SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PIGR-92 NM_002644 exon8 c.G1903T p.G635X AGCTTCCACCTTG . 158 66 149 1 . 342 321 21 0 0 CD46 4179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 207940508 207940508 + Missense_Mutation SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . CD46-963 NM_172352 exon6 c.C824A p.T275N ACAGTACTTGGGA . 60 23 80 0 . 216 127 89 0 0 RBM34 23029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 235318245 235318245 + Missense_Mutation SNP T T A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . RBM34-46 NM_001161533 exon4 c.A548T p.N183I CTCTCATTCTTTA . 266 90 288 0 . 20 7 13 0 0 FMN2 56776 hgsc.bcm.edu 37 1 240371661 240371661 + Silent SNP A A C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . FMN2-145 NM_020066 exon5 c.A3549C p.G1183G AGTGGGAATACCT . 32 3 44 1 . 0 0 0 0 0 ECD 11319 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 74896486 74896486 + Missense_Mutation SNP T T G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ECD-91 NM_001135752 exon14 c.A1779C p.K593N GAAACTTTTGCTG . 179 75 225 0 . 48 32 16 0 0 COX15 1355 hgsc.bcm.edu 37 10 101491791 101491791 + Missense_Mutation SNP A A C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . COX15-227 NM_078470 exon1 c.T16G p.F6V GCGGAAAGAGCAA . 56 18 56 0 . 11 9 2 0 0 E2F8 79733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 19251275 19251275 + Missense_Mutation SNP A A T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . E2F8-91 NM_001256372 exon10 c.T1619A p.L540Q GGGCTCAGGCCTT . 410 146 448 0 . 0 0 0 0 0 QSER1 79832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 32954930 32954930 + Nonsense_Mutation SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . QSER1-95 NM_001076786 exon4 c.C1739A p.S580X TTGAGTCATCAAC . 48 14 47 0 . 0 0 0 0 0 MADD 8567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 47304129 47304129 + Missense_Mutation SNP T T G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . MADD-682 NM_130474 exon9 c.T1667G p.L556R GGATCCTTAACCC . 137 50 138 0 . 11 3 8 0 0 PIK3C2G 5288 hgsc.bcm.edu;broad.mit.edu 37 12 18658292 18658292 + Missense_Mutation SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PIK3C2G-1312 NM_004570 exon23 c.G3097A p.D1033N GTATGTGACCGTC . 11 7 16 0 . 0 0 0 0 0 PDZRN4 29951 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 41585335 41585335 + Nonsense_Mutation SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PDZRN4-296 NM_001164595 exon2 c.C724T p.R242X GGAGGTCGACCAA . 105 34 56 0 . 0 0 0 0 0 ACAD10 80724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 112184083 112184083 + Missense_Mutation SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ACAD10-92 NM_001136538 exon15 c.C2344A p.P782T TATGCCCCCGAGG . 339 89 265 0 . 2 0 2 0 0 TMEM132D 121256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 130184819 130184819 + Silent SNP C C G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . TMEM132D-106 NM_133448 exon2 c.G504C p.L168L GACCCTCAGGCAC . 103 57 96 0 . 0 0 0 0 0 SLC46A3 283537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 29287510 29287510 + Missense_Mutation SNP A A G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SLC46A3-69 NM_181785 exon3 c.T367C p.Y123H CAAAATAGCAAAG . 54 13 68 0 . 57 36 21 0 0 BRCA2 675 hgsc.bcm.edu 37 13 32913098 32913098 + Missense_Mutation SNP A A G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . BRCA2-3153 NM_000059 exon11 c.A4606G p.K1536E ATTGCAAAGGAAT . 31 2 31 0 . 0 0 0 0 0 ATP7B 540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 52548108 52548108 + Silent SNP A A T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ATP7B-92 NM_000053 exon2 c.T1248A p.A416A TTCTATAGCAGCT . 245 90 201 0 . 6 2 4 0 0 RNF219 79596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 79190506 79190506 + Missense_Mutation SNP T T A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . RNF219-135 NM_024546 exon6 c.A1390T p.T464S ATCCTGTCTTTGG . 58 25 34 0 . 9 5 4 0 0 PSME2 5721 ucsc.edu 37 14 24613239 24613239 + Splice_Site SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PSME2-90 NM_002818 exon10 c.498-1G>A . AAGTACCTGCCAG . 420 1 269 0 . 3 3 0 0 0 SDR39U1 56948 hgsc.bcm.edu 37 14 24910963 24910963 + Missense_Mutation SNP C C G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SDR39U1-46 NM_020195 exon4 c.G245C p.R82P TCTAGGCGGCTGC . 74 6 84 0 . 0 0 0 0 0 SPINT1 6692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 41146021 41146021 + Silent SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SPINT1-91 NM_181642 exon5 c.C855T p.G285G CTTGGGCAACAAG . 317 106 391 0 . 99 53 45 0 1 TP53BP1 7158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 43724401 43724401 + Silent SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . TP53BP1-294 NM_001141980 exon17 c.C3666T p.L1222L GCTATGGAGCGAC . 37 13 48 0 . 0 0 0 0 0 CGNL1 84952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 57730838 57730838 + Missense_Mutation SNP C C G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . CGNL1-100 NM_001252335 exon3 c.C641G p.T214R GTGTGACAGCTAT . 467 169 625 1 . 3 2 1 0 0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79058483 79058483 + Missense_Mutation SNP A A G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ADAMTS7-226 NM_014272 exon19 c.T3770C p.V1257A TCCGCCACGTCAG . 94 7 138 2 . 13 13 0 0 0 MCTP2 55784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 94841734 94841734 + Silent SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . MCTP2-93 NM_001159643 exon1 c.C240T p.S80S GCCCAGCAGTCTG . 261 80 359 0 . 1 1 0 0 0 KIAA0556 23247 broad.mit.edu 37 16 27786370 27786370 + Missense_Mutation SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . KIAA0556-141 NM_015202 exon24 c.C4414T p.R1472W GATGGCCGGCACA . 175 4 178 0 . 14 14 0 0 0 FANCA 2175 hgsc.bcm.edu 37 16 89883000 89883000 + Missense_Mutation SNP G G C rs76275444 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . FANCA-1130 NM_000135 exon1 c.C24G p.N8K GGCGGAGTTCGGG . 8 4 2 1 G|0.032;C|0.968 1 1 0 0 0 SLC43A2 124935 hgsc.bcm.edu 37 17 1494129 1494129 + Missense_Mutation SNP G G A rs145755178 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SLC43A2-91 NM_152346 exon9 c.C1045T p.L349F ACTTGAGGATGTT . 6 3 5 1 G|1.000;A|0.000 126 73 53 0 0 ZNF594 84622 ucsc.edu 37 17 5085331 5085331 + Missense_Mutation SNP T T G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ZNF594-71 NM_032530 exon2 c.A2221C p.T741P TGAAGGTTTTCTC . 298 3 246 0 . 30 23 7 0 0 CDRT4 284040 broad.mit.edu 37 17 15341130 15341130 + Missense_Mutation SNP C C T rs139647100 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . CDRT4-90 NM_001204477 exon4 c.G419A p.R140H GGCTTGCGGGCAA . 153 6 53 1 C|1.000;T|0.000 26 26 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 914 120 819 126 . 72 14 58 0 0 ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 29220728 29220728 + Missense_Mutation SNP T T G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ATAD5-93 NM_024857 exon21 c.T4857G p.N1619K AAACAATCCAGAG . 126 28 120 0 . 4 2 2 0 0 TANC2 26115 hgsc.bcm.edu;broad.mit.edu 37 17 61466867 61466867 + Missense_Mutation SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . TANC2-24 NM_025185 exon15 c.C2791A p.L931M GGGTACCTGAGCA . 57 28 29 0 . 0 0 0 0 0 SLC16A6 9120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 66270212 66270212 + Splice_Site SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SLC16A6-90 NM_004694 exon4 c.233-1G>T . GGGGAGCTGCCGG . 102 43 98 1 . 3 0 3 0 0 PTPRM 5797 bcgsc.ca 37 18 7567847 7567847 + Missense_Mutation SNP T T A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PTPRM-228 NM_001105244 exon1 c.T31A p.L11M GCGACTTTGGCCG . 120 44 157 0 . 1 1 0 0 0 TAF4B 6875 broad.mit.edu 37 18 23895311 23895311 + Missense_Mutation SNP G G C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . TAF4B-71 NM_005640 exon10 c.G1951C p.D651H TGTAAAGATGAAC . 108 3 97 0 . 1 1 0 0 0 SALL3 27164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 76754972 76754972 + Missense_Mutation SNP T T C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SALL3-155 NM_171999 exon2 c.T2981C p.I994T TGGAAATCCACTA . 86 33 148 0 . 0 0 0 0 0 DOT1L 84444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 2191111 2191111 + Missense_Mutation SNP C C G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . DOT1L-132 NM_032482 exon5 c.C365G p.P122R CCGACCCCGAGAA . 116 41 122 0 . 1 0 1 0 0 DOT1L 84444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 2216711 2216711 + Silent SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . DOT1L-132 NM_032482 exon20 c.G2355A p.L785L GCACCTGAGCCAG . 105 41 134 1 . 10 6 4 0 0 SLC25A23 79085 hgsc.bcm.edu 37 19 6444308 6444308 + Missense_Mutation SNP A A G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SLC25A23-92 NM_024103 exon9 c.T1076C p.L359P TTCTTCAGAGTCT . 29 2 37 0 . 0 0 0 0 0 ZNF136 7695 broad.mit.edu;ucsc.edu 37 19 12297631 12297631 + Missense_Mutation SNP G G T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ZNF136-92 NM_003437 exon4 c.G438T p.W146C GTGTTGGAAACCC . 15 5 34 0 . 7 2 5 0 0 SLC1A6 6511 broad.mit.edu 37 19 15067457 15067457 + Missense_Mutation SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SLC1A6-186 NM_005071 exon6 c.G1000A p.V334I CCAGGACGGCCAT . 142 4 206 0 . 0 0 0 0 0 CASP14 23581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15164633 15164633 + Silent SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . CASP14-230 NM_012114 exon4 c.C267T p.H89H GGCTCACGGGAGG . 244 35 281 0 . 0 0 0 0 0 NWD1 284434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 16918705 16918705 + Missense_Mutation SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . NWD1-7 NM_001007525 exon18 c.G4045A p.E1349K CTGCCCGAGACCC . 404 153 475 0 . 0 0 0 0 0 FCGBP 8857 hgsc.bcm.edu 37 19 40395978 40395978 + Silent SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . FCGBP-98 NM_003890 exon15 c.C7419T p.G2473G GCAGGTGCCCATG . 248 41 271 1 . 9 9 0 0 0 ZNF285 26974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 44896570 44896570 + Missense_Mutation SNP C C G rs144077949 byfrequency;alternate_allele TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ZNF285-94 NM_152354 exon3 c.G76C p.D26H CTTTATCCAATAG . 74 33 67 0 C|0.997;T|0.003 1 1 0 0 0 EML2 24139 hgsc.bcm.edu 37 19 46142624 46142624 + Missense_Mutation SNP A A C rs201822741 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . EML2-154 NM_012155 exon1 c.T11G p.F4C GCTCCAAAGCTAC . 11 4 8 0 A|0.994;C|0.006 1 0 1 0 0 DHDH 27294 hgsc.bcm.edu;broad.mit.edu 37 19 49438360 49438360 + Missense_Mutation SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . DHDH-90 NM_014475 exon2 c.C194T p.P65L AGGACCCGAGCGT . 10 6 30 1 . 0 0 0 0 0 ZNF665 79788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 53669370 53669370 + Missense_Mutation SNP C C G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ZNF665-70 NM_024733 exon4 c.G373C p.A125P GTTGAGCTCTTCT . 196 64 271 0 . 1 0 1 0 0 HADHA 3030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 26459821 26459821 + Missense_Mutation SNP G G C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . HADHA-91 NM_000182 exon4 c.C216G p.F72L TTCTGAGAACTCT . 246 82 180 0 . 118 61 57 0 0 GTF3C2 2976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 27565920 27565920 + Silent SNP G G T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . GTF3C2-92 NM_001521 exon4 c.T342A p.V114V CTGTTGGGGCCTT . 227 78 331 1 . 31 31 0 0 0 EML4 27436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 42488420 42488420 + Silent SNP T T C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . EML4-3734 NM_019063 exon4 c.T498C p.A166A GAATGCTACTCCC . 115 31 165 1 . 0 0 0 0 0 HAAO 23498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 42994588 42994588 + Missense_Mutation SNP G G C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . HAAO-91 NM_012205 exon10 c.C850G p.P284A CCAGGGGCTTCTT . 67 11 61 0 . 43 27 16 0 0 EDAR 10913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 109527287 109527287 + Silent SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . EDAR-92 NM_022336 exon8 c.G675A p.P225P CTTCCCCGGGTGG . 150 48 207 1 . 5 1 4 0 0 BIN1 274 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 127818193 127818193 + Missense_Mutation SNP C C G rs117721706 byfrequency;alternate_allele TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . BIN1-655 NM_139346 exon10 c.G788C p.R263P CGCAGCCGCGAAA . 143 47 183 0 C|0.992;T|0.008 0 0 0 0 0 ORC2 4999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 201790595 201790595 + Missense_Mutation SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ORC2-209 NM_006190 exon13 c.G1111T p.D371Y GCTGATCCAGTAT . 218 79 213 1 . 3 3 0 0 0 HELZ2 85441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 62193087 62193087 + Missense_Mutation SNP T T C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . . NM_001037335 exon13 c.A6703G p.R2235G TCCTTCTCAGGAG . 63 23 88 0 . 2 2 0 0 0 LSS 4047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 47626684 47626684 + Splice_Site SNP T T G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . LSS-90 NM_001001438 exon17 c.1468-2A>C . AGCAGCTGAAATC . 154 59 175 0 . 3 0 3 0 0 ARSA 410 broad.mit.edu 37 22 51063617 51063617 + Missense_Mutation SNP T T G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ARSA-92 NM_001085426 exon9 c.A1486C p.T496P GGGGGGTGCAGCC . 31 7 49 13 . 84 79 5 0 0 TRNT1 51095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 3189651 3189651 + Missense_Mutation SNP G G C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . TRNT1-90 NM_182916 exon8 c.G1118C p.C373S AGCACTGTCTCCT . 20 8 38 0 . 20 14 6 0 0 OSBPL10 114884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 31774841 31774841 + Missense_Mutation SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . OSBPL10-69 NM_017784 exon6 c.C1003T p.L335F AGCCAAGTGTCCC . 285 80 318 0 . 16 5 11 0 0 ATR 545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 142274792 142274792 + Silent SNP A A T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ATR-1139 NM_001184 exon10 c.T2268A p.S756S TAGTTGAGAAGAT . 128 42 178 0 . 2 2 0 0 0 CRYGS 1427 broad.mit.edu 37 3 186256498 186256498 + Missense_Mutation SNP C C T rs201717880 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . CRYGS-90 NM_017541 exon3 c.G524A p.R175H ACAATGCGGCGGA . 217 4 136 0 C|0.999;T|0.001 6 6 0 0 0 SLC26A1 10861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 985220 985220 + Missense_Mutation SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SLC26A1-91 NM_022042 exon2 c.C272T p.S91L AGCAATGAGTAGG . 228 82 257 0 . 0 0 0 0 0 ACOX3 8310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 8417674 8417674 + Missense_Mutation SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ACOX3-90 NM_001101667 exon3 c.G197A p.G66E TCGGCTCCAGGGG . 197 74 231 0 . 7 3 4 0 0 GPR125 166647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 22390249 22390249 + Missense_Mutation SNP C C G rs76872619 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . GPR125-91 NM_145290 exon19 c.G3045C p.L1015F AACAGCCAAAGCC . 144 57 114 0 C|1.000;T|0.000 125 68 57 0 0 AASDH 132949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 57248668 57248668 + Missense_Mutation SNP A A T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . AASDH-94 NM_181806 exon3 c.T326A p.I109N ACAAGGATATACT . 45 16 72 0 . 1 1 0 0 0 ABCG2 9429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 89039327 89039327 + Silent SNP A A G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ABCG2-90 NM_004827 exon7 c.T775C p.L259L AGGCCAATAAGGT . 86 32 99 0 . 3 3 0 0 0 NDST4 64579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 115767018 115767018 + Silent SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . NDST4-94 NM_022569 exon10 c.C2076T p.I692I AATGAGGATGGTG . 128 51 135 0 . 0 0 0 0 0 ASB5 140458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 177136796 177136796 + Silent SNP T T C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ASB5-228 NM_080874 exon7 c.A945G p.Q315Q CTGGAGTTGTGGG . 56 16 68 0 . 0 0 0 0 0 FAM149A 25854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187077186 187077186 + Missense_Mutation SNP A A G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . FAM149A-90 NM_001006655 exon6 c.A416G p.Q139R CAGCTCAGCCCGG . 114 41 132 0 . 89 50 39 0 0 LIFR 3977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 38504185 38504185 + Missense_Mutation SNP T T C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . LIFR-1173 NM_002310 exon10 c.A1330G p.I444V AATTAATATCCTT . 57 18 66 0 . 0 0 0 0 0 RICTOR 253260 broad.mit.edu 37 5 38953603 38953603 + Missense_Mutation SNP C C G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . RICTOR-849 NM_152756 exon28 c.G2750C p.W917S TCTTCCCACTTAT . 14 3 25 0 . 4 3 1 0 0 C5orf34 375444 ucsc.edu 37 5 43490825 43490825 + Silent SNP C C A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . C5orf34-153 NM_198566 exon11 c.G1587T p.V529V TGTTGTCACATAT . 35 4 41 0 . 0 0 0 0 0 PCDHGA4 56111 hgsc.bcm.edu 37 5 140735218 140735218 + Missense_Mutation SNP A A G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . . NM_018917 exon1 c.A451G p.R151G GGGGCAAGATTTC . 79 22 110 2 . 0 0 0 0 0 SLC36A3 285641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 150660717 150660717 + Nonsense_Mutation SNP G G T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SLC36A3-93 NM_001145017 exon10 c.C1125A p.Y375X GATAGAGTACATC . 198 75 186 0 . 0 0 0 0 0 RGS14 10636 hgsc.bcm.edu;broad.mit.edu 37 5 176797996 176797996 + Missense_Mutation SNP G G T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . RGS14-226 NM_006480 exon11 c.G1218T p.K406N GGAGAAGCACGGC . 49 16 72 0 . 7 6 1 0 0 SQSTM1 8878 hgsc.bcm.edu 37 5 179248068 179248068 + Silent SNP C C T rs11548639 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . SQSTM1-92 NM_003900 exon1 c.C132T p.C44C ACCCTGCGAGCGG . 15 7 23 0 . 20 12 8 0 0 OR11A1 26531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 29395381 29395381 + Missense_Mutation SNP T T G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . OR11A1-23 NM_013937 exon1 c.A38C p.E13A ACAAATTCAGTAA . 98 34 130 0 . 0 0 0 0 0 PNPLA1 285848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 36269817 36269817 + Missense_Mutation SNP G G A rs182227800 TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PNPLA1-137 NM_001145717 exon6 c.G955A p.D319N AAAGGGGATGGAA . 169 61 217 0 G|0.999;A|0.000 0 0 0 0 0 SEPT7 989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 35912377 35912377 + Splice_Site SNP G G A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . . NM_001011553 exon4 c.374+1G>A . TAATTGGTAAGAA . 35 13 34 0 . 12 0 12 0 0 ZNF777 27153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 149129443 149129443 + Silent SNP C C T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ZNF777-136 NM_015694 exon6 c.G1920A p.E640E GTCGCACTCGGGG . 515 202 366 1 . 20 15 5 0 0 CA9 768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 35674197 35674197 + Nonsense_Mutation SNP G G T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . CA9-95 NM_001216 exon1 c.G241T p.E81X GGAGAGGAGGATC . 84 23 112 0 . 1 1 0 0 0 AGTPBP1 23287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 88201776 88201776 + Missense_Mutation SNP T T A novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . AGTPBP1-158 NM_015239 exon22 c.A2883T p.Q961H CAAGTATTGCAAC . 110 38 163 1 . 16 10 6 0 0 LONRF3 79836 hgsc.bcm.edu 37 X 118109101 118109101 + Missense_Mutation SNP G G T novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . LONRF3-289 NM_001031855 exon1 c.G358T p.A120S GGCGAGGCGCTGG . 8 7 7 0 . 0 0 0 0 0 ZMYM6 9204 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 35457962 35457962 + Frame_Shift_Del DEL T T - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ZMYM6-93 NM_007167 exon15 c.2019delA p.K673fs . . 165 54 196 0 . 0 0 0 0 0 A2ML1 144568 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 9006738 9006738 + Frame_Shift_Del DEL A A - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . A2ML1-93 NM_144670 exon21 c.2605delA p.T869fs . . 134 72 75 0 . 0 0 0 0 0 ST20 400410 hgsc.bcm.edu;bcgsc.ca 37 15 80191469 80191474 + Splice_Site DEL TATGAG TATGAG - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 TATGAG TATGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ST20-68 . . . . . . 38 11 45 0 . 0 0 0 0 0 PTPRM 5797 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 7567846 7567846 + Frame_Shift_Del DEL T T - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PTPRM-228 NM_001105244 exon1 c.30delT p.T10fs . . 129 46 172 0 . 0 0 0 0 0 PTPRM 5797 hgsc.bcm.edu 37 18 7567846 7567847 + Frame_Shift_Del DEL TT TT - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PTPRM-228 NM_001105244 exon1 c.30_31del p.10_11del . . 129 21 171 0 . 0 0 0 0 0 ANTXR1 84168 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 69472576 69472579 + Frame_Shift_Del DEL GCAC GCAC - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 GCAC GCAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . ANTXR1-94 NM_032208 exon18 c.1654_1657del p.552_553del . . 106 22 124 0 . 0 0 0 0 0 CYP2D6 1565 broad.mit.edu 37 22 42523507 42523516 + Frame_Shift_Del DEL AGGGGGACGA AGGGGGACGA - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 AGGGGGACGA AGGGGGACGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . CYP2D6-136 NM_000106 exon7 c.1106_1115del p.369_372del ACACCCAGGGGGA . 142 13 201 0 . 0 0 0 0 0 PCDHGA4 56111 hgsc.bcm.edu 37 5 140735215 140735218 + Frame_Shift_Del DEL GCAA GCAA - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 GCAA GCAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . . NM_018917 exon1 c.448_451del p.150_151del . . 81 19 110 0 . 0 0 0 0 0 HECA 51696 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 139495590 139495590 + Frame_Shift_Del DEL A A - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . HECA-90 NM_016217 exon3 c.1381delA p.K461fs . . 180 59 156 0 . 0 0 0 0 0 COL5A1 1289 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 137593045 137593045 + Frame_Shift_Del DEL A A - novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . COL5A1-524 NM_000093 exon4 c.520delA p.K174fs . . 78 28 89 0 . 0 0 0 0 0 GTF3C2 2976 broad.mit.edu;bcgsc.ca 37 2 27565919 27565920 + Frame_Shift_Ins INS - - TGGCCTTT novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . GTF3C2-92 NM_001035521 exon3 c.343_344insAAAGGCCA p.P115fs GCTGTTGGGGCCT . 219 28 315 0 . 0 0 0 0 0 XRCC5 7520 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 216981563 216981564 + Frame_Shift_Ins INS - - C novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . XRCC5-970 NM_021141 exon3 c.317_318insC p.D106fs . . 75 24 96 0 . 0 0 0 0 0 TOP3B 8940 hgsc.bcm.edu;broad.mit.edu 37 22 22319734 22319735 + In_Frame_Ins INS - - TTG novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . TOP3B-538 NM_003935 exon9 c.866_867insCAA p.S289delinsTS . . 55 14 68 0 . 0 0 0 0 0 PCDHGA4 56111 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140735217 140735218 + Frame_Shift_Ins INS - - G novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . . NM_018917 exon1 c.450_451insG p.A150fs . . 77 22 110 0 . 0 0 0 0 0 PRKRIP1 79706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 102040095 102040096 + Splice_Site DNP GG GG AA novel TCGA-B9-4113-01A-01D-1252-08 TCGA-B9-4113-11A-01D-1252-08 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 527ea66a-fb9e-4308-b49d-48226ac05304 881301ff-ec26-46fd-834f-93d9b3ec8da0 . PRKRIP1 exon3 c.306+1G>A . GAGAAGGTCAGTG . 360.0 147.0 223.0 0.0 . 0 0 0 0 0