Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
VCAM1	7412	hgsc.bcm.edu	37	1	101186217	101186217	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	VCAM1-90	NM_001078	exon2	c.C250G	p.P84A	ATGAATCCTGTTA	.	14	2	132	0	.	2722	2720	0	1	1
PLA2G4A	5321	hgsc.bcm.edu	37	1	186916022	186916022	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PLA2G4A-721	NM_024420	exon12	c.C1193G	p.S398C	CCTTTTCCATATT	.	37	2	161	0	.	0	0	0	0	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	C	T	rs2573509		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PARG-948	NM_003631	exon8	c.G1750A	p.A584T	CTTCTGCTTCTTC	.	41	3	116	1	.	0	0	0	0	0
ITPRIP	85450	ucsc.edu	37	10	106075205	106075205	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	ITPRIP-90	NM_001272013	exon2	c.T605G	p.V202G	CTGTCCACCTGCC	.	269	78	123	27	.	6	5	1	0	0
MRGPRX4	117196	ucsc.edu;bcgsc.ca	37	11	18195248	18195248	+	Silent	SNP	C	C	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	MRGPRX4-91	NM_054032	exon1	c.C445T	p.L149L	TGGGGCCTGTCCC	.	767	131	483	4	.	0	0	0	0	0
C1QTNF4	114900	hgsc.bcm.edu	37	11	47611940	47611940	+	Missense_Mutation	SNP	C	C	G	rs142453721		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	C1QTNF4-90	NM_031909	exon2	c.G423C	p.Q141H	CGCGTACTGCGGG	.	4	2	0	0	C|0.981;G|0.019	0	0	0	0	0
NAALAD2	10003	broad.mit.edu	37	11	89911214	89911214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	NAALAD2-92	NM_005467	exon16	c.A1787T	p.N596I	TGAAAAACTATGC	.	234	5	218	0	.	0	0	0	0	0
MLL2	8085	broad.mit.edu	37	12	49445198	49445198	+	Silent	SNP	A	A	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	MLL2-612	NM_003482	exon10	c.T2268C	p.P756P	CTCCTCAGGCCGG	.	137	3	94	0	.	1	1	0	0	0
SLC46A3	283537	hgsc.bcm.edu	37	13	29278214	29278214	+	Silent	SNP	A	A	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SLC46A3-69	NM_181785	exon5	c.T1167C	p.A389A	TAAGAAAGCAATA	.	26	2	114	0	.	39	39	0	0	0
REC8	9985	ucsc.edu;bcgsc.ca	37	14	24646579	24646579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	REC8-90	NM_001048205	exon9	c.G724C	p.A242P	CCTCCAGCTCCTG	.	158	80	173	3	.	2	0	2	0	0
DTD2	112487	hgsc.bcm.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	.	NM_080664	exon1	c.C16T	p.R6W	GAATCCGGCTACC	.	17	7	11	1	.	30	21	9	0	0
CBFA2T3	863	hgsc.bcm.edu	37	16	88943542	88943542	+	Missense_Mutation	SNP	C	C	T	rs200760802		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	CBFA2T3-722	NM_005187	exon12	c.G1804A	p.V602M	CCACCACGGCTGT	.	7	6	4	0	.	0	0	0	0	0
VPS53	55275	broad.mit.edu	37	17	465803	465803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	VPS53-90	NM_001128159	exon14	c.C1496T	p.T499I	AAAATGGTGGTCA	.	149	4	161	0	.	20	20	0	0	0
KRTAP1-5	83895	hgsc.bcm.edu	37	17	39183062	39183062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	.	NM_031957	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	98	5	46	2	.	0	0	0	0	0
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	60766323	60766323	+	Splice_Site	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	MRC2-117	NM_006039	exon23	c.3334+2T>C	.	CACGGGTATGTGT	.	81	14	54	0	.	0	0	0	0	0
NOL4	8715	hgsc.bcm.edu	37	18	31709939	31709939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	NOL4-93	NM_003787	exon2	c.G310C	p.V104L	CAACCACAGCTAC	.	34	2	130	0	.	0	0	0	0	0
AMH	268	hgsc.bcm.edu	37	19	2251512	2251512	+	Silent	SNP	T	T	A	rs7252789		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	AMH-130	NM_000479	exon5	c.T1239A	p.G413G	CCCAGGTGGCCCC	.	4	4	1	1	T|0.069;A|0.931	0	0	0	0	0
ACSBG2	81616	hgsc.bcm.edu	37	19	6177251	6177251	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	ACSBG2-23	NM_030924	exon8	c.T750G	p.I250M	GTGGATTGCAGGA	.	64	4	86	0	.	0	0	0	0	0
UBA52	7311	hgsc.bcm.edu;broad.mit.edu	37	19	18685757	18685757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	UBA52-90	NM_001033930	exon4	c.A268T	p.N90Y	AAATACAACTGCG	.	128	13	77	0	.	775	756	19	0	0
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	4	4	1	1	T|0.245;C|0.755	1	0	1	0	0
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29432730	29432730	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	ALK-3833	NM_004304	exon25	c.G3758C	p.R1253T	CAGTTTCTGGCAG	.	105	16	98	0	.	0	0	0	0	0
LRP1B	53353	hgsc.bcm.edu	37	2	141032014	141032014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	LRP1B-311	NM_018557	exon85	c.A13121G	p.D4374G	TCACTGTCTTTAT	.	36	2	214	1	.	0	0	0	0	0
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179476553	179476553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	TTN-636	NM_001267550	exon268	c.C50483A	p.A16828D	TTTTCAGCCCGAA	.	42	14	311	3	.	9	6	3	0	0
THBD	7056	broad.mit.edu	37	20	23029807	23029807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	THBD-90	NM_000361	exon1	c.C335T	p.T112M	TCTCCCGTAACCC	.	16	5	10	0	.	0	0	0	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37962631	37962631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	CDC42EP1-90	NM_152243	exon2	c.T275G	p.V92G	GGAGGGTGGGGGC	.	66	28	71	15	.	12	11	1	0	0
SLC9C1	285335	broad.mit.edu	37	3	111958847	111958847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	.	NM_183061	exon12	c.G1286C	p.R429P	GCATCACGAAGAC	.	111	3	163	0	.	0	0	0	0	0
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129284750	129284750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PLXND1-90	NM_015103	exon24	c.G4302T	p.K1434N	AAAGTCCTTCTGC	.	117	15	69	0	.	18	18	0	0	0
SLC2A2	6514	broad.mit.edu	37	3	170727776	170727776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SLC2A2-515	NM_000340	exon4	c.C467A	p.A156D	CTTCCAGCAATTA	.	19	3	78	0	.	44	24	19	0	1
ELF2	1998	hgsc.bcm.edu	37	4	139980523	139980523	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	ELF2-228	NM_201999	exon9	c.A1360G	p.T454A	CAAGCTGTGTAGC	.	35	2	191	0	.	14	14	0	0	0
POU4F3	5459	broad.mit.edu	37	5	145719656	145719656	+	Silent	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	POU4F3-90	NM_002700	exon2	c.G666T	p.S222S	GGGCTCGCTGAGC	.	225	6	141	1	.	0	0	0	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166493	180166493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	OR2Y1-68	NM_001001657	exon1	c.C566T	p.A189V	GTGTCCGCACAAG	.	198	5	144	1	.	0	0	0	0	0
PBX2	5089	broad.mit.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	T	A	rs202223627		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PBX2-91	NM_002586	exon5	c.A785T	p.Y262F	TAGAAATACTCAT	.	25	4	25	0	T|0.999;A|0.001	46	46	0	0	0
RBAK	57786	hgsc.bcm.edu;ucsc.edu	37	7	5105227	5105227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	RBAK-653	NM_001204456	exon6	c.C2140T	p.L714F	GAAAATCTCTGAA	.	56	15	89	0	.	10	8	2	0	0
EPDR1	54749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	37960767	37960767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	EPDR1-91	NM_001242946	exon1	c.G226T	p.V76L	CAGCGCGTGCGGG	.	135	18	83	0	.	32	29	3	0	0
SRRT	51593	broad.mit.edu	37	7	100485034	100485034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SRRT-92	NM_001128853	exon16	c.G2069A	p.R690H	TGGGGCGCAAAGA	.	343	6	199	0	.	31	31	0	0	0
UBAP2	55833	hgsc.bcm.edu	37	9	33960823	33960823	+	Splice_Site	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	UBAP2-94	NM_018449	exon11	c.798+1G>C	.	CACTTACATCTTC	.	32	2	109	0	.	0	0	0	0	0
EGFL6	25975	broad.mit.edu	37	X	13635856	13635856	+	Silent	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	EGFL6-193	NM_001167890	exon8	c.T786C	p.P262P	TATCCCTGAAAAT	.	529	4	399	0	.	0	0	0	0	0
PLS3	5358	broad.mit.edu	37	X	114874764	114874764	+	Silent	SNP	A	A	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PLS3-193	NM_005032	exon9	c.A936G	p.K312K	ACCAAAAGGACAA	.	154	3	120	0	.	133	133	0	0	0
NLGN4Y	22829	hgsc.bcm.edu	37	Y	16952767	16952767	+	Silent	SNP	C	C	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	.	NM_014893	exon6	c.C2076T	p.A692A	CTTAGCCTTTGCG	.	4	4	1	0	.	2	0	2	0	0
SAV1	60485	hgsc.bcm.edu;broad.mit.edu	37	14	51132122	51132129	+	Frame_Shift_Del	DEL	CTAGACTT	CTAGACTT	-	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	CTAGACTT	CTAGACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SAV1-658	NM_021818	exon2	c.303_310del	p.101_104del	.	.	50	13	59	0	.	0	0	0	0	0
BRSK1	84446	broad.mit.edu	37	19	55815036	55815036	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	BRSK1-759	NM_032430	exon12	c.1128delC	p.D376fs	CTCAGACCCCCCC	.	339	9	176	0	.	0	0	0	0	0