Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu	37	1	79402059	79402059	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ELTD1-24	NM_022159	exon7	c.A798G	p.K266K	AATATGTTTCATG	.	164	23	95	0	.	3	3	0	0	0
AMY2B	280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	104122036	104122036	+	Missense_Mutation	SNP	G	G	A	rs143243690		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	AMY2B-90	NM_020978	exon12	c.G1450A	p.V484I	ATCTACGTTTCTG	.	1115	198	735	1	G|1.000;A|0.000	15	10	5	0	0
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113616063	113616063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	LRIG2-229	NM_014813	exon1	c.A35T	p.Q12L	AGGAGCAGTTGCT	.	352	123	320	0	.	0	0	0	0	0
CERS2	29956	ucsc.edu	37	1	150940937	150940937	+	Silent	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	NM_022075	exon3	c.G225A	p.R75R	CCGCAGCCGAGTT	.	71	4	53	0	.	375	281	94	0	0
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155899153	155899153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	KIAA0907-90	NM_014949	exon4	c.G398C	p.S133T	GCCCCACTAAGTC	.	139	52	88	0	.	49	22	27	0	0
USF1	7391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161011569	161011569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	USF1-516	NM_001276373	exon6	c.A344G	p.H115R	GTATAGTGCGTCT	.	141	13	123	0	.	39	33	6	0	0
TMCC2	9911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	205238546	205238546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TMCC2-91	NM_014858	exon3	c.G1216T	p.V406F	GAGGGCGTCAAGG	.	114	36	92	2	.	0	0	0	0	0
PYROXD2	84795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	100167696	100167696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PYROXD2-90	NM_032709	exon3	c.T206C	p.I69T	CCCCCGATCACAT	.	17	4	17	0	.	7	6	1	0	0
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105793764	105793764	+	Silent	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	COL17A1-95	NM_000494	exon52	c.T4095C	p.A1365A	AAAGTCAGCTCCC	.	140	42	122	0	.	1	0	1	0	0
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129859261	129859261	+	Silent	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PTPRE-227	NM_006504	exon8	c.C570A	p.I190I	CTACATCAATGCT	.	109	38	87	0	.	8	4	4	0	0
PAOX	196743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135193909	135193909	+	Silent	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PAOX-131	NM_207128	exon2	c.C588T	p.G196G	GAGCGGCACCCAC	.	83	7	73	0	.	13	12	1	0	0
HPX	3263	ucsc.edu;bcgsc.ca	37	11	6453151	6453151	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	HPX-90	NM_000613	exon8	c.C932G	p.A311G	GAAAAGGCAGCAT	.	295	100	224	6	.	0	0	0	0	0
GYS2	2998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21757442	21757442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GYS2-523	NM_021957	exon1	c.C85A	p.L29M	AGAGCAGTAACTC	.	346	175	207	0	.	0	0	0	0	0
ALG10	84920	ucsc.edu	37	12	34179835	34179835	+	Silent	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ALG10-91	NM_032834	exon3	c.A1407G	p.Q469Q	CATTCAAAGGTTT	.	506	2	248	0	.	14	10	4	0	0
TSFM	10102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	58177005	58177005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TSFM-492	NM_005726	exon2	c.C170T	p.T57I	GGAAAACAGGCTA	.	337	96	215	0	.	28	26	2	0	0
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111321841	111321841	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CCDC63-134	NM_152591	exon8	c.G861C	p.K287N	TCTCAAGGCAAAG	.	296	144	170	0	.	0	0	0	0	0
KDM2B	84678	broad.mit.edu	37	12	121880611	121880611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	KDM2B-638	NM_032590	exon19	c.G2633A	p.R878H	GCCATGCGGTCCT	.	37	3	19	0	.	21	21	0	0	0
KNTC1	9735	hgsc.bcm.edu	37	12	123073262	123073262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	KNTC1-543	NM_014708	exon40	c.T3898C	p.F1300L	AAGTTATTTGGAG	.	7	4	3	0	.	0	0	0	0	0
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	38154716	38154716	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	POSTN-516	NM_006475	exon11	c.A1511C	p.K504T	TCTTGTTTTAACT	.	411	141	262	2	.	2	2	0	0	0
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	61987658	61987658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PCDH20-581	NM_022843	exon2	c.T574C	p.F192L	TCACAAACCTGAA	.	193	20	141	1	.	5	4	1	0	0
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MYH7-94	NM_000257	exon32	c.G4459A	p.A1487T	CATAGGCGTTCTT	.	257	77	234	0	.	0	0	0	0	0
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40594160	40594160	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PLCB2-275	NM_004573	exon7	c.A580T	p.K194X	TCACTTTGCCTTT	.	72	21	99	0	.	0	0	0	0	0
GLDN	342035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51693835	51693835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GLDN-92	NM_181789	exon9	c.G1073A	p.G358D	TGAATGGCAGTTA	.	197	76	176	0	.	3	3	0	0	0
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62221845	62221845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	VPS13C-92	NM_020821	exon51	c.G6141C	p.K2047N	ATACAGCTTGTCA	.	82	30	76	0	.	16	11	5	0	0
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68497600	68497600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CALML4-90	NM_033429	exon1	c.A115C	p.S39R	CTCGGCTGCTACC	.	121	41	106	1	.	26	16	10	0	0
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72192125	72192125	+	Silent	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MYO9A-93	NM_006901	exon24	c.A3373C	p.R1125R	TCCATCTTGCTTG	.	123	46	97	0	.	26	10	16	0	0
ADAMTSL3	57188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	84581896	84581896	+	Nonsense_Mutation	SNP	C	C	T	rs202011681	alternate_allele	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ADAMTSL3-1153	NM_207517	exon16	c.C1753T	p.Q585X	GGTGTGCAGGTCC	.	198	52	176	1	C|0.999;G|0.001	0	0	0	0	0
DNM1P46	196968	bcgsc.ca	37	15	100332761	100332761	+	RNA	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	.	.	.	.	TGAGCACCCCTCC	.	115	15	105	0	.	1	0	1	0	0
SLX4	84464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3641173	3641173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SLX4-94	NM_032444	exon12	c.G2466C	p.M822I	TGCCCACATTGAC	.	291	79	247	0	.	9	6	3	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu	37	16	18844471	18844471	+	Silent	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SMG1-1160	NM_015092	exon51	c.C8583T	p.F2861F	TTGCCGGAAATTC	.	97	28	89	0	.	31	14	17	0	0
CORO1A	11151	ucsc.edu	37	16	30198806	30198806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CORO1A-226	NM_001193333	exon7	c.T740G	p.V247G	GGCAGGTGGCGCT	.	37	3	60	5	.	41	30	11	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30732089	30732089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SRCAP-94	NM_006662	exon20	c.C3043A	p.P1015T	AACAACCCACGGG	.	275	93	223	0	.	14	11	3	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3953114	3953114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZZEF1-93	NM_015113	exon37	c.G5903A	p.G1968E	GAGTCCCCATCTG	.	170	54	111	0	.	8	8	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	787	74	362	19	.	30	4	26	0	0
RAB34	83871	broad.mit.edu	37	17	27045260	27045260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAB34-227	NM_001142624	exon1	c.T26G	p.L9W	CTCCTCAACTCCA	.	23	6	21	0	.	0	0	0	0	0
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74283337	74283337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	QRICH2-94	NM_032134	exon7	c.A3449T	p.Q1150L	CTGTCTTGGCTCT	.	118	31	74	0	.	1	1	0	0	0
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80888515	80888515	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TBCD-22	NM_005993	exon33	c.G3109C	p.E1037Q	CTGAATGAGAGGT	.	106	27	60	0	.	0	0	0	0	0
HDHD2	84064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44662721	44662721	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	HDHD2-90	NM_032124	exon2	c.A90G	p.E30E	AAGAGCTTCCTGT	.	221	83	159	0	.	7	4	3	0	0
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47500737	47500737	+	Silent	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MYO5B-72	NM_001080467	exon10	c.G1305A	p.G435G	CAGGACCCCGATG	.	92	35	108	0	.	89	34	55	0	0
RFX2	5990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6013026	6013026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RFX2-156	NM_000635	exon8	c.G870A	p.M290I	CTGCCGCATGGCC	.	320	119	279	0	.	9	4	5	0	0
ZNF99	7652	hgsc.bcm.edu	37	19	22940806	22940806	+	Silent	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZNF99-24	NM_001080409	exon4	c.C1905T	p.T635T	TCTAAGGGTTGAG	.	118	6	95	1	.	0	0	0	0	0
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40486339	40486339	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PSMC4-91	NM_006503	exon9	c.T1065C	p.S355S	CCTCTCTGAGGAG	.	299	103	251	2	.	73	36	37	0	0
GIPR	2696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46184876	46184876	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GIPR-523	NM_000164	exon13	c.C1167G	p.S389R	GGTCAGCGTCCTC	.	99	30	96	0	.	1	1	0	0	0
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49261265	49261265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	FGF21-522	NM_019113	exon3	c.C418A	p.H140N	GAAGCCCACGGCC	.	218	78	241	1	.	0	0	0	0	0
SIGLEC9	27180	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	51633170	51633170	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SIGLEC9-91	NM_014441	exon7	c.C1226G	p.A409G	CTTGGGCAGAAGA	.	142	38	141	0	.	7	7	0	0	0
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48050458	48050458	+	Silent	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	FBXO11-659	NM_001190274	exon12	c.A1440C	p.A480A	AAAGCCTGCTATC	.	89	30	71	1	.	26	13	13	0	0
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48808956	48808956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	STON1-91	NM_001198595	exon3	c.A1184G	p.E395G	TGGAGGAGGAGCT	.	134	40	96	1	.	4	3	1	0	0
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86371415	86371415	+	Silent	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	IMMT-91	NM_006839	exon15	c.A2253C	p.G751G	AGTGGTTCCTATT	.	101	40	94	0	.	115	52	63	0	0
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215440518	215440518	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	NM_001080500	exon4	c.G643T	p.E215X	AAACGTGAATGCC	.	305	93	211	0	.	0	0	0	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233681744	233681744	+	Splice_Site	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GIGYF2-28	NM_001103148	exon19	c.2352+2T>A	.	AACAGGTATGTAT	.	344	93	278	1	.	0	0	0	0	0
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu	37	20	18433281	18433281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	NM_001099407	exon6	c.G521C	p.R174T	GGTGGTCTAGAAC	.	35	8	14	0	.	2	1	1	0	0
FRG1B	284802	bcgsc.ca	37	20	29632680	29632680	+	RNA	SNP	G	G	A	rs4892355		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	FRG1B-22	.	.	.	.	TAAAAAGGCTCAG	.	1026	75	583	31	G|0.500;A|0.500	79	79	0	0	0
CD40	958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44757638	44757638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CD40-659	NM_001250	exon9	c.G793C	p.D265H	CAGGAGGATGGCA	.	208	43	120	0	.	42	34	8	0	0
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47887763	47887763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZNFX1-24	NM_021035	exon3	c.A586G	p.S196G	TGGAGCTACAAGC	.	306	151	183	0	.	37	17	20	0	0
COL18A1-AS1	378832	ucsc.edu;bcgsc.ca	37	21	46842430	46842430	+	RNA	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	.	.	.	.	CCTGGCCTGACGC	.	11	8	20	0	.	0	0	0	0	0
GNAZ	2781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	23438484	23438484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GNAZ-963	NM_002073	exon2	c.A602G	p.D201G	TGGTGGACGTGGG	.	228	69	247	1	.	7	3	4	0	0
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24447425	24447425	+	Silent	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CABIN1-94	NM_001199281	exon8	c.T795A	p.I265I	GCCCATTCCTTTC	.	56	24	58	0	.	0	0	0	0	0
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32193641	32193641	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	DEPDC5-519	NM_001242897	exon13	c.A823T	p.K275X	ACCATTAAAAAAC	.	69	28	58	0	.	0	0	0	0	0
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38374016	38374016	+	Silent	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SOX10-650	NM_006941	exon3	c.G555A	p.Q185Q	CTCGCCCTGGGCG	.	67	19	65	0	.	0	0	0	0	0
UPK3A	7380	broad.mit.edu	37	22	45683306	45683306	+	Silent	SNP	A	A	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	UPK3A-90	NM_006953	exon3	c.A462C	p.A154A	TAACGCACCCCTG	.	18	7	21	5	.	0	0	0	0	0
OGG1	4968	hgsc.bcm.edu;bcgsc.ca	37	3	9798228	9798228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	OGG1-660	NM_016819	exon5	c.T821A	p.I274N	GGCACATTGCCCA	.	79	31	77	0	.	13	13	0	0	0
RAF1	5894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12633229	12633229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAF1-1404	NM_002880	exon11	c.A1171T	p.R391W	CATTCCTGAAGGC	.	102	31	77	0	.	92	57	35	0	0
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	25646332	25646332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TOP2B-273	NM_001068	exon33	c.G4393T	p.D1465Y	CAGAATCTTCTTC	.	142	54	82	1	.	74	54	20	0	0
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38835251	38835251	+	Missense_Mutation	SNP	G	G	A	rs140609990		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SCN10A-99	NM_006514	exon1	c.C251T	p.P84L	TAGAACGGATCTA	.	316	94	212	0	G|1.000;A|0.000	0	0	0	0	0
MST1	4485	hgsc.bcm.edu	37	3	49725253	49725253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MST1-278	NM_020998	exon2	c.G172A	p.G58R	AAGGCCCGGGCAC	.	96	5	95	1	.	16	16	0	0	0
ATP6V1A	523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113503595	113503595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ATP6V1A-93	NM_001690	exon5	c.C479G	p.S160W	AGAACTCGCTTAT	.	171	58	125	0	.	46	27	19	0	0
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71659564	71659564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RUFY3-90	NM_001037442	exon13	c.A1400G	p.D467G	AACAGGACTTTGG	.	99	34	83	0	.	11	5	6	0	0
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76532405	76532405	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CDKL2-454	NM_003948	exon4	c.A504G	p.R168R	TGGAGCTCTGTAC	.	124	44	98	1	.	3	2	1	0	0
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	90035227	90035227	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TIGD2-90	NM_145715	exon1	c.G1102T	p.E368X	ATTTATGAAGTGT	.	103	31	54	0	.	11	9	2	0	0
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	138450855	138450855	+	Silent	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PCDH18-185	NM_019035	exon1	c.C2388T	p.H796H	ACTGTTGTGACTC	.	97	44	69	0	.	1	1	0	0	0
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146041306	146041306	+	Splice_Site	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ABCE1-91	NM_002940	exon11	c.1144+1G>A	.	AAAATGGTAAGTT	.	95	33	62	0	.	2	0	2	0	0
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30857025	30857025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	DDR1-1403	NM_001202523	exon4	c.G289A	p.V97M	GGGTCGGTGTTTC	.	482	150	384	0	.	270	124	146	0	0
PREP	5550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105825364	105825364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PREP-93	NM_002726	exon3	c.G151C	p.V51L	ATGGCACAGTAAT	.	173	62	100	0	.	15	9	6	0	0
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117622147	117622147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ROS1-1353	NM_002944	exon42	c.A6723C	p.E2241D	AAAGCTTTCATTT	.	109	38	76	0	.	0	0	0	0	0
RAET1L	154064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150342042	150342042	+	Silent	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAET1L-90	NM_130900	exon3	c.A630T	p.G210G	GTTACCTCCTGCA	.	235	84	182	1	.	0	0	0	0	0
NSUN5P1	155400	broad.mit.edu;bcgsc.ca	37	7	75045841	75045841	+	RNA	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	NSUN5P1-22	.	.	.	.	CAGCAAAGAGCCG	.	203	88	136	0	.	62	44	18	0	0
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100383746	100383746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZAN-142	.	.	.	.	GCAACAGCAATTG	.	282	138	202	1	.	0	0	0	0	0
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100692247	100692247	+	Silent	SNP	G	G	A	rs200175178		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MUC17-95	NM_001040105	exon5	c.G12657A	p.T4219T	ATTCACGGAACAG	.	135	47	73	0	G|0.999;A|0.000	0	0	0	0	0
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123264837	123264837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ASB15-228	NM_080928	exon6	c.C666A	p.H222Q	TGGTCACTGTGAC	.	83	35	61	0	.	0	0	0	0	0
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141800677	141800677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MGAM-70	NM_004668	exon45	c.T5262G	p.D1754E	GGATGATGGGCAA	.	52	26	32	0	.	0	0	0	0	0
BMP1	649	broad.mit.edu;bcgsc.ca	37	8	22022973	22022973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	BMP1-155	NM_001199	exon1	c.C55A	p.P19T	CCGCGTCCCGGCC	.	27	7	21	0	.	7	3	4	0	0
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121587444	121587444	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SNTB1-228	NM_021021	exon4	c.C1018T	p.Q340X	TCCACTGTTTCTT	.	219	62	170	0	.	6	6	0	0	0
ZFP41	286128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144332048	144332048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZFP41-91	NM_173832	exon2	c.C35T	p.P12L	AGACGCCGACCCC	.	44	12	40	1	.	2	2	0	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84608132	84608132	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	NM_001001670	exon4	c.G2747A	p.W916X	TGCTGTGGGGCCT	.	89	34	71	1	.	0	0	0	0	0
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3238719	3238719	+	Silent	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MXRA5-136	NM_015419	exon5	c.T5007C	p.S1669S	TGTTGTACTTGAT	.	292	220	221	0	.	13	1	12	0	0
CTPS2	56474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	16685795	16685795	+	Silent	SNP	A	A	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CTPS2-228	NM_001144002	exon12	c.T1242G	p.L414L	CAAGTTAAGGCAG	.	85	58	67	0	.	0	0	0	0	0
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	98741324	98741326	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	C10orf12-92	NM_015652	exon1	c.177_179del	p.59_60del	.	.	108	37	79	0	.	0	0	0	0	0
ARHGAP32	9743	hgsc.bcm.edu;bcgsc.ca	37	11	128839901	128839901	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ARHGAP32-231	NM_001142685	exon22	c.5165delA	p.N1722fs	.	.	198	44	161	0	.	0	0	0	0	0
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121746455	121746458	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ANAPC5-290	NM_016237	exon17	c.2093_2096del	p.698_699del	.	.	299	132	220	0	.	0	0	0	0	0
C15orf52	388115	broad.mit.edu	37	15	40633079	40633079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	C15orf52-153	NM_207380	exon1	c.74delT	p.F25fs	GGGAGGAAAGCTG	.	28	9	17	0	.	0	0	0	0	0
RAB27B	5874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	52555227	52555230	+	Frame_Shift_Del	DEL	CCAA	CCAA	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	CCAA	CCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAB27B-227	NM_004163	exon5	c.345_348del	p.115_116del	.	.	199	39	131	0	.	0	0	0	0	0
CD2AP	23607	bcgsc.ca	37	6	47591945	47591953	+	In_Frame_Del	DEL	AGCTGTCCT	AGCTGTCCT	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	AGCTGTCCT	AGCTGTCCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CD2AP-92	NM_012120	exon18	c.1902_1910del	p.634_637del	GAAAAAAGCTGTC	.	74	6	73	0	.	0	0	0	0	0
GIGYF2	26058	broad.mit.edu;bcgsc.ca	37	2	233681733	233681734	+	Frame_Shift_Ins	INS	-	-	AGGAAAC	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GIGYF2-28	NM_001103147	exon22	c.2424_2425insAGGAAAC	p.R808fs	TGCCCGAAGGAAA	.	300	45	246	0	.	0	0	0	0	0
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9798226	9798227	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	OGG1-660	NM_016819	exon5	c.819_820insAA	p.H273fs	.	.	86	28	80	0	.	0	0	0	0	0