Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GABRD	2563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1960690	1960690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GABRD-92	NM_000815	exon7	c.G832A	p.A278T	GTGCCCGCCAGGG	.	56	9	74	0	.	2	2	0	0	0
ARID1A	8289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27100918	27100918	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ARID1A-584	NM_006015	exon18	c.T4200C	p.P1400P	GCAGCCTCAGCAG	.	136	33	198	1	.	1	1	0	0	0
NUDC	10726	broad.mit.edu	37	1	27268248	27268248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NUDC-91	NM_006600	exon4	c.A368G	p.K123R	AGAAAAAGGATGC	.	162	4	243	0	.	0	0	0	0	0
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27943445	27943445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FGR-547	NM_001042729	exon7	c.A605T	p.K202I	TCCAGTTTGCGGA	.	139	29	199	0	.	21	21	0	0	0
MRPS15	64960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36921882	36921882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MRPS15-91	NM_031280	exon7	c.T542C	p.I181T	CAGCATATCTTCT	.	72	22	67	0	.	189	109	80	0	0
BCAR3	8412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94033045	94033045	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BCAR3-228	NM_001261409	exon11	c.C2090G	p.S697C	CATGTGGACTCTG	.	63	14	99	0	.	0	0	0	0	0
DRAM2	128338	broad.mit.edu	37	1	111667502	111667502	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DRAM2-90	NM_178454	exon5	c.C201A	p.C67X	AGCAATGCCTGGG	.	63	4	76	0	.	0	0	0	0	0
FLG	2312	broad.mit.edu	37	1	152276113	152276113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FLG-106	NM_002016	exon3	c.C11249A	p.A3750E	TGGGACGCTGAGT	.	140	4	140	0	.	0	0	0	0	0
GON4L	54856	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	155734744	155734744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GON4L-93	NM_032292	exon21	c.T4520C	p.M1507T	TGATACATATTAC	.	303	86	299	0	.	9	6	3	0	0
GORAB	92344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	170508438	170508438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GORAB-90	NM_152281	exon2	c.A224C	p.K75T	GCCAAAAACTTGG	.	149	39	164	0	.	1	0	1	0	0
TEDDM1	127670	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182369011	182369011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TEDDM1-92	NM_172000	exon1	c.T610C	p.W204R	CATGCCAGCAGAA	.	114	29	132	1	.	0	0	0	0	0
EIF2D	1939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	206767112	206767112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	EIF2D-92	NM_006893	exon14	c.G1540A	p.G514S	CCAGACCATAGGC	.	37	8	45	0	.	122	82	40	0	0
PLXNA2	5362	broad.mit.edu	37	1	208257763	208257763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PLXNA2-92	NM_025179	exon10	c.C2260T	p.R754C	TGAAGCGCAGAGC	.	66	3	112	0	.	0	0	0	0	0
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223983631	223983631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TP53BP2-229	NM_001031685	exon13	c.G2610T	p.E870D	GTACTCCTCCAGG	.	72	19	81	0	.	8	3	5	0	0
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45936826	45936826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ALOX5-228	NM_000698	exon9	c.T1220A	p.I407N	TTGCAATCAACAC	.	67	24	94	0	.	45	37	8	0	0
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	51585173	51585173	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NCOA4-1042	NM_001145261	exon9	c.G1320A	p.K440K	TGAGAAGGAGGCT	.	151	47	175	0	.	8	7	1	0	0
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74879906	74879906	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NUDT13-90	NM_015901	exon3	c.A214C	p.S72R	CGGCACAGCCTGT	.	52	17	78	0	.	0	0	0	0	0
ZMIZ1	57178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	80968102	80968102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZMIZ1-292	NM_020338	exon6	c.A70T	p.N24Y	TTACAGAATCCTG	.	63	16	70	0	.	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108371744	108371744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SORCS1-153	NM_001206572	exon22	c.C2958A	p.N986K	ATCCAGGTTTGGA	.	158	44	161	0	.	0	0	0	0	0
OR5P2	120065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	7818420	7818420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	OR5P2-496	NM_153444	exon1	c.C70A	p.P24T	GGATTGGATCATC	.	61	15	67	0	.	0	0	0	0	0
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	27402259	27402259	+	Splice_Site	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LGR4-91	NM_018490	exon10	c.831-1G>C	.	AAATGTCTGTGAA	.	223	73	232	0	.	0	0	0	0	0
PLCB3	5331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64034708	64034708	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PLCB3-228	NM_000932	exon30	c.C3466T	p.Q1156X	CAGCAGCAGGTCC	.	101	30	138	0	.	39	31	8	0	0
NRXN2	9379	broad.mit.edu	37	11	64453314	64453314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NRXN2-232	NM_015080	exon6	c.G956A	p.R319H	AGGGTGCGGAAGG	.	191	5	205	0	.	0	0	0	0	0
NAALADL1	10004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64813975	64813975	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NAALADL1-90	NM_005468	exon14	c.C1623T	p.Y541Y	GGTGGGGTAGATC	.	138	31	184	0	.	0	0	0	0	0
FAM86C1	55199	broad.mit.edu	37	11	71507083	71507083	+	Silent	SNP	G	G	A	rs34247448		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAM86C1-90	NM_018172	exon4	c.G282A	p.K94K	CCAGAAGCCATCG	.	61	3	91	1	.	40	38	2	0	0
CLPB	81570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72145214	72145214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CLPB-91	NM_001258392	exon1	c.A305T	p.D102V	CAGCTGTCCTGTC	.	69	15	96	0	.	3	3	0	0	0
FZD4	8322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	86663362	86663362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FZD4-1145	NM_012193	exon2	c.A436G	p.S146G	ATTTGCTGCAGTT	.	101	20	146	0	.	3	3	0	0	0
FAT3	120114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	92531377	92531377	+	Missense_Mutation	SNP	G	G	A	rs150673105		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAT3-73	NM_001008781	exon9	c.G5198A	p.R1733H	ATGAGCGCACATC	.	109	16	104	0	G|0.995;A|0.005	0	0	0	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103022865	103022865	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DYNC2H1-68	NM_001377	exon21	c.A2947T	p.I983F	CTTTAGATTTTGC	.	92	12	88	7	.	0	0	0	0	0
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103091430	103091430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DYNC2H1-68	NM_001377	exon57	c.C9025G	p.P3009A	CGCATGCCACCTG	.	106	14	119	1	.	0	0	0	0	0
SLC35F2	54733	broad.mit.edu	37	11	107682461	107682461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SLC35F2-90	NM_017515	exon3	c.C346A	p.L116I	CTGCTAGTCCCAG	.	101	3	146	0	.	3	3	0	0	0
BACE1	23621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117186300	117186300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BACE1-91	NM_138972	exon1	c.C212T	p.S71L	TGCCCCGACTTGC	.	127	48	152	1	.	0	0	0	0	0
ADAMTS15	170689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130319535	130319535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ADAMTS15-291	NM_139055	exon1	c.C667G	p.L223V	GAGACGCTGGTGG	.	99	11	123	2	.	0	0	0	0	0
GUCY2C	2984	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14839143	14839143	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GUCY2C-338	NM_004963	exon3	c.G347C	p.G116A	ACACAGCCCATCC	.	73	27	85	1	.	0	0	0	0	0
FAM186B	84070	broad.mit.edu	37	12	49994268	49994268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAM186B-91	NM_032130	exon4	c.A1155G	p.I385M	TGCAGCTATAGCA	.	73	4	69	0	.	0	0	0	0	0
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59268266	59268266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LRIG3-229	NM_153377	exon17	c.A2785C	p.M929L	AATACATAGGGCC	.	130	48	146	0	.	25	21	4	0	0
GPN3	51184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110902939	110902939	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GPN3-90	NM_001164372	exon2	c.A246G	p.A82A	GTGTTCTGCTGCT	.	106	18	111	0	.	18	13	5	0	0
BRCA2	675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32912897	32912897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BRCA2-3153	NM_000059	exon11	c.G4405T	p.D1469Y	CATTCTGACATAA	.	324	90	351	1	.	0	0	0	0	0
KLF5	688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	73636276	73636276	+	Missense_Mutation	SNP	C	C	T	rs200707995		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	KLF5-155	NM_001730	exon2	c.C539T	p.P180L	CTCCTCCGGCCCC	.	75	17	128	0	C|0.999;T|0.000	3	1	2	0	0
FAM155A	728215	hgsc.bcm.edu	37	13	108518698	108518698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAM155A-23	NM_001080396	exon1	c.C247A	p.Q83K	GCTGCTGCTGCTG	.	28	5	16	0	.	0	0	0	0	0
ACOT1	641371	broad.mit.edu	37	14	74004293	74004293	+	Silent	SNP	C	C	T	rs61746981		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ACOT1-44	NM_001037161	exon1	c.C168T	p.T56T	CGACACCCTTGGC	.	52	9	8	0	C|0.029;T|0.971	0	0	0	0	0
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39877738	39877738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	THBS1-653	NM_003246	exon7	c.A1094G	p.D365G	TTCCTGATGGAGA	.	34	7	35	0	.	3	2	1	0	0
SPINT1	6692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41136856	41136856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SPINT1-91	NM_181642	exon2	c.C104A	p.A35D	CCCAGGCCGGGCC	.	77	23	15	0	.	0	0	0	0	0
LRRC57	255252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42837381	42837381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LRRC57-90	NM_153260	exon5	c.G572A	p.S191N	AGCATGCTGAGCT	.	74	26	85	0	.	6	5	1	0	0
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49148178	49148178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SHC4-95	NM_203349	exon8	c.C1214A	p.P405H	TGTATGGGGCAGT	.	117	28	145	0	.	0	0	0	0	0
FBXL22	283807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63889797	63889797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FBXL22-90	NM_203373	exon1	c.C206T	p.P69L	TGGGCCCGGCACT	.	25	6	58	0	.	0	0	0	0	0
LARP6	55323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71128826	71128826	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LARP6-90	NM_018357	exon2	c.A219G	p.G73G	CTCACCTCCACTT	.	70	24	81	0	.	4	2	2	0	0
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	88680721	88680721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NTRK3-3538	NM_001243101	exon7	c.A536G	p.E179G	TTGGCCTCCCCCT	.	41	4	56	0	.	0	0	0	0	0
PARN	5073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14678281	14678281	+	Splice_Site	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PARN-24	NM_001242992	exon16	c.868-2A>G	.	ATATCCTGCAAAC	.	60	22	95	0	.	0	0	0	0	0
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20489950	20489950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ACSM2A-91	NM_001010845	exon11	c.G1232A	p.G411D	ACATTGGCATCAG	.	67	24	89	0	.	836	764	72	0	0
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24801321	24801321	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TNRC6A-92	NM_014494	exon6	c.C1358G	p.P453R	CTGGACCAAATAA	.	102	25	106	0	.	0	0	0	0	0
ATP2A1	487	bcgsc.ca	37	16	28914659	28914659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ATP2A1-93	NM_004320	exon21	c.C2878T	p.R960W	AAGCTCCGGGCCC	.	70	4	86	0	.	3	3	0	0	0
ZNF764	92595	broad.mit.edu	37	16	30569338	30569338	+	Silent	SNP	G	G	T	rs112425159		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF764-91	NM_001172679	exon1	c.C166A	p.R56R	TCTCCCGCATCAC	.	144	5	95	0	G|0.500;T|0.500	0	0	0	0	0
PYDC1	260434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31228204	31228204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PYDC1-68	NM_152901	exon1	c.T146C	p.I49T	TCCACGATATCTA	.	98	23	172	0	.	0	0	0	0	0
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48576974	48576974	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	N4BP1-22	NM_153029	exon7	c.C2532T	p.P844P	TGGCATGGGCAGG	.	68	9	76	0	.	25	24	1	0	0
ADCY7	113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50338447	50338447	+	Silent	SNP	C	C	T	rs144290211		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ADCY7-91	NM_001114	exon10	c.C1545T	p.N515N	CCCCAACGGGCGG	.	112	26	107	2	C|1.000;T|0.000	5	4	1	0	0
BCAR1	9564	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	75276534	75276534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BCAR1-1145	NM_001170714	exon3	c.C605G	p.P202R	GGAAACGGGTGAT	.	94	25	126	1	.	8	5	3	0	0
HS3ST3A1	9955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	13504436	13504436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HS3ST3A1-515	NM_006042	exon1	c.C11A	p.P4Q	GGGCCCGGAGGGG	.	67	15	66	0	.	0	0	0	0	0
NF1	4763	broad.mit.edu	37	17	29533389	29533389	+	Silent	SNP	G	G	A	rs201604273		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NF1-3353	NM_001128147	exon12	c.G1392A	p.P464P	GGCACCGGTAAGA	.	134	4	171	1	G|0.999;A|0.000	0	0	0	0	0
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33288777	33288777	+	Silent	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF830-89	NM_052857	exon1	c.C192A	p.L64L	CGAGCTCCTGTGG	.	128	53	117	0	.	7	6	1	0	0
GGNBP2	79893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34934557	34934557	+	Silent	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GGNBP2-70	NM_024835	exon7	c.C786T	p.C262C	TGTTTGCTGTGAA	.	108	24	131	0	.	6	6	0	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40849969	40849969	+	Splice_Site	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CNTNAP1-525	NM_003632	exon23	c.3862+1G>T	.	TAGGCTGTGAGTA	.	74	3	100	0	.	0	0	0	0	0
NBR1	4077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41343439	41343439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NBR1-130	NM_031862	exon10	c.T914C	p.L305S	AAAGGTTGCGAGC	.	324	83	383	1	.	9	6	3	0	0
RPRML	388394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45056083	45056083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RPRML-68	NM_203400	exon1	c.C291A	p.S97R	GATCATGCTCTCG	.	102	28	106	0	.	1	1	0	0	0
ABCA10	10349	broad.mit.edu	37	17	67189985	67189985	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ABCA10-93	NM_080282	exon14	c.A1491G	p.K497K	AATCCCTTTTATT	.	157	4	167	0	.	0	0	0	0	0
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72862364	72862364	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FDXR-226	NM_001258012	exon5	c.C525T	p.S175S	CCCGTAGCTCTGA	.	74	12	103	1	.	0	0	0	0	0
FBF1	85302	broad.mit.edu	37	17	73916511	73916511	+	Splice_Site	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FBF1-205	NM_001080542	exon18	c.1630-1G>T	.	CAGGGGCTGGAGG	.	103	3	130	0	.	0	0	0	0	0
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13055803	13055803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CEP192-27	NM_032142	exon19	c.A3214T	p.T1072S	TTGAGTACCACAA	.	42	14	67	0	.	0	0	0	0	0
CABLES1	91768	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20814665	20814665	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CABLES1-522	NM_001100619	exon5	c.G1182A	p.G394G	TGATGGGAAGGTA	.	73	24	136	1	.	0	0	0	0	0
PHLPP1	23239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	60384475	60384475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	NM_194449	exon1	c.T1559A	p.L520H	GCTGCCTCATCCG	.	46	16	80	0	.	0	0	0	0	0
FSD1	79187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4306032	4306032	+	Silent	SNP	C	C	T	rs143212819		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FSD1-91	NM_024333	exon2	c.C105T	p.N35N	GCTGAACGTGGAG	.	79	28	119	0	C|1.000;T|0.000	0	0	0	0	0
FEM1A	55527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4792820	4792820	+	Silent	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FEM1A-90	NM_018708	exon1	c.C954A	p.A318A	TGGGGCCCTTAAA	.	108	32	159	0	.	2	1	1	0	0
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8922694	8922694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF558-90	NM_144693	exon6	c.T472C	p.F158L	CTTTAAAACACTG	.	72	9	84	0	.	0	0	0	0	0
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9639297	9639297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF426-91	NM_024106	exon8	c.C1424T	p.P475L	TCATAGGGTTTTT	.	114	29	147	0	.	0	0	0	0	0
ICAM3	3385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10444569	10444569	+	Silent	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ICAM3-131	NM_002162	exon7	c.A1608T	p.T536T	TGCTTCTGTCGGC	.	121	24	162	0	.	70	56	14	0	0
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15752256	15752256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CYP4F3-93	NM_001199209	exon2	c.C31G	p.L11V	CTGGGCCTTTGGC	.	64	16	84	0	.	0	0	0	0	0
CPAMD8	27151	broad.mit.edu	37	19	17056401	17056401	+	Silent	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CPAMD8-141	NM_015692	exon22	c.C2892A	p.V964V	GATGGGGACCCTC	.	63	3	104	0	.	0	0	0	0	0
ZNF506	440515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19905760	19905760	+	Silent	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF506-68	NM_001099269	exon4	c.C936G	p.P312P	TTTGTAGGGTTTC	.	39	10	36	0	.	4	1	0	3	0
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41129532	41129532	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LTBP4-93	.	.	.	.	CTCTTCCGAGACC	.	45	12	60	0	.	30	27	3	0	0
CYP2F1	1572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41627458	41627458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CYP2F1-90	NM_000774	exon5	c.C580T	p.R194C	GATGAGCGTCTGC	.	43	13	69	0	.	1	1	0	0	0
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43772079	43772079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PSG9-92	NM_002784	exon2	c.G287A	p.S96N	CTTCCACTGTATG	.	149	44	171	0	.	0	0	0	0	0
CLASRP	11129	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45561034	45561034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CLASRP-154	NM_007056	exon7	c.G491A	p.G164D	CCATCGGTTATAC	.	106	28	120	0	.	29	16	13	0	0
DMWD	1762	broad.mit.edu	37	19	46289396	46289396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DMWD-90	NM_004943	exon3	c.A1358C	p.H453P	GGGGGGTGCGGGT	.	96	28	66	12	.	1	1	0	0	0
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52660313	52660313	+	Missense_Mutation	SNP	A	A	T	rs186568049	alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF836-46	NM_001102657	exon5	c.T623A	p.L208H	TTCTCAAGTTGGG	.	177	48	180	0	A|0.999;C|0.000	0	0	0	0	0
PTPRH	5794	broad.mit.edu	37	19	55697891	55697891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PTPRH-138	NM_002842	exon15	c.C2584T	p.P862S	TCAGGGGCACCCG	.	54	3	67	0	.	1	1	0	0	0
ZIM2	23619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57286732	57286732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZIM2-28	NM_015363	exon11	c.G908A	p.G303E	TCCTTTCCTAGAG	.	88	21	112	0	.	0	0	0	0	0
LPIN1	23175	broad.mit.edu	37	2	11925180	11925180	+	Silent	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LPIN1-156	NM_001261428	exon11	c.C1674T	p.S558S	CCTCAGCGACCAC	.	75	3	97	0	.	0	0	0	0	0
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	16082258	16082258	+	Silent	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MYCN-1271	NM_005378	exon2	c.A72G	p.L24L	CTCGCTACAGCCC	.	216	58	264	0	.	0	0	0	0	0
DPY30	84661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32264491	32264491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DPY30-68	NM_032574	exon2	c.A35T	p.Q12L	GATACCTGCGTTT	.	103	29	117	0	.	0	0	0	0	0
EPAS1	2034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	46607787	46607787	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	EPAS1-227	NM_001430	exon12	c.C1976G	p.T659R	AGCGCACAGAGTT	.	76	17	90	0	.	6	5	1	0	0
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125175092	125175092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CNTNAP5-524	NM_130773	exon4	c.G454A	p.V152I	CGATTTGTTCGCT	.	125	41	122	1	.	0	0	0	0	0
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179843225	179843225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CCDC141-78	NM_173648	exon3	c.G403T	p.E135X	CATTTTCAAAAAA	.	100	16	127	0	.	0	0	0	0	0
HIBCH	26275	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191069874	191069874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HIBCH-90	NM_014362	exon14	c.A1130G	p.K377R	AAAGACTTAAAGT	.	107	32	111	1	.	48	40	8	0	0
NEU2	4759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233898967	233898967	+	Silent	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NEU2-90	NM_005383	exon2	c.C343T	p.L115L	CAGCAGCTGCAGA	.	64	14	111	0	.	0	0	0	0	0
ATRN	8455	broad.mit.edu;bcgsc.ca	37	20	3452154	3452154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ATRN-154	NM_139321	exon1	c.G400C	p.G134R	TGCGGGGGCCGCT	.	23	4	23	0	.	0	0	0	0	0
SSTR4	6754	broad.mit.edu	37	20	23016957	23016957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SSTR4-522	NM_001052	exon1	c.G837T	p.Q279H	GGTGCAGCTGCTG	.	67	3	82	0	.	0	0	0	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NCOA6-292	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	38	3	62	1	.	0	0	0	0	0
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	32639267	32639267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TIAM1-724	NM_003253	exon5	c.C22T	p.H8Y	CTACATGTTGACT	.	24	7	50	0	.	0	0	0	0	0
HDAC11	79885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13525052	13525052	+	Silent	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HDAC11-228	NM_024827	exon3	c.T240G	p.L80L	CTATCTTAATGAG	.	105	65	180	0	.	0	0	0	0	0
DAZL	1618	broad.mit.edu	37	3	16639640	16639640	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DAZL-90	NM_001190811	exon3	c.G256C	p.V86L	CTTTCACTGAACC	.	176	5	189	0	.	0	0	0	0	0
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42218379	42218379	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TRAK1-91	NM_001265608	exon3	c.G360A	p.E120E	TCTTGAGGAGGTA	.	82	39	126	0	.	0	0	0	0	0
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	43388848	43388848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SNRK-815	NM_017719	exon7	c.A1097T	p.K366I	CAACCAAAATTGA	.	27	16	55	0	.	1	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47030855	47030855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NBEAL2-69	NM_015175	exon5	c.C457T	p.R153W	ACCTGGCGGCGCC	.	72	3	92	0	.	0	0	0	0	0
PBRM1	55193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52649430	52649430	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PBRM1-575	NM_018313	exon16	c.A1861T	p.K621X	TCCTTTTCTCCTT	.	63	35	83	0	.	0	0	0	0	0
DENND6A	201627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57616537	57616537	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	NM_152678	exon17	c.A1422C	p.L474F	CTGTCTTAATTGA	.	116	39	125	1	.	1	1	0	0	0
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8230146	8230146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SH3TC1-154	NM_018986	exon12	c.T2725C	p.F909L	GCCAACTTCGGGG	.	82	24	73	0	.	10	7	3	0	0
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73012854	73012854	+	Silent	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NPFFR2-92	NM_004885	exon4	c.C894G	p.S298S	CAACTCCCAGAAT	.	58	15	82	0	.	0	0	0	0	0
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89658657	89658657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAM13A-70	NM_014883	exon21	c.A2612T	p.E871V	TCGCCCTCGATAA	.	85	24	115	0	.	3	2	1	0	0
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154542029	154542029	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	KIAA0922-92	NM_001131007	exon27	c.C3689A	p.S1230X	CAGTCTCAAGGTG	.	651	188	671	0	.	0	0	0	0	0
PALLD	23022	broad.mit.edu	37	4	169432701	169432701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PALLD-94	NM_001166108	exon2	c.G46T	p.D16Y	CTCTCAGACATGC	.	88	3	110	0	.	0	0	0	0	0
C6	729	broad.mit.edu	37	5	41176588	41176588	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	C6-95	NM_001115131	exon8	c.T1157A	p.L386Q	TTCTTTAGTTCCT	.	181	4	147	1	.	0	0	0	0	0
C6	729	broad.mit.edu	37	5	41176594	41176594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	C6-95	NM_001115131	exon8	c.A1151C	p.E384A	AGTTCCTCACTGC	.	190	5	148	0	.	3	3	0	0	0
F2R	2149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76029290	76029290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	F2R-93	NM_001992	exon2	c.A1240G	p.N414D	TCTAGTAACCTGA	.	121	21	143	0	.	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	40	18	5	0	G|0.834;C|0.166	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950718	79950718	+	Missense_Mutation	SNP	G	G	C	rs148550291		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MSH3-661	NM_002439	exon1	c.G172C	p.A58P	GCGGCCGCAGCGG	.	38	8	5	0	G|0.837;C|0.162	0	0	0	0	0
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138855862	138855862	+	Missense_Mutation	SNP	C	C	T	rs117897081	byfrequency;alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TMEM173-69	NM_198282	exon8	c.G1124A	p.R375H	TCCGTGCGGAGAG	.	90	38	105	0	C|0.995;A|0.005	75	59	16	0	0
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176305475	176305475	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	UNC5A-91	NM_133369	exon13	c.2020-1G>A	.	CCATCAGGAGATC	.	110	24	115	0	.	0	0	0	0	0
UIMC1	51720	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176395662	176395662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	UIMC1-208	NM_016290	exon6	c.G1094A	p.R365K	GATGCCCTAGACT	.	121	28	90	1	.	4	0	4	0	0
SQSTM1	8878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179250983	179250983	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SQSTM1-92	NM_003900	exon3	c.A427T	p.S143C	AAGTGCAGCGTCT	.	97	44	115	1	.	428	214	214	0	0
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30622528	30622528	+	Silent	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DHX16-228	NM_003587	exon19	c.G2952T	p.L984L	GTAGAGCAGCCAG	.	75	22	117	2	.	67	46	21	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47251781	47251781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TNFRSF21-227	NM_014452	exon3	c.A1136G	p.K379R	GGCCCCTTTTTCA	.	106	3	127	0	.	32	32	0	0	0
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70646796	70646796	+	Silent	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	COL19A1-156	NM_001858	exon8	c.A867G	p.P289P	CATTCCAAACAAG	.	102	28	122	0	.	0	0	0	0	0
IMPG1	3617	broad.mit.edu	37	6	76640750	76640750	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	IMPG1-93	NM_001563	exon15	c.C2163T	p.S721S	GTCCAGGCTCCCC	.	107	3	138	1	.	0	0	0	0	0
TRIL	9865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	28996484	28996484	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	.	.	.	.	GGCCGGGGGGTGG	.	61	17	39	0	.	0	0	0	0	0
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48319048	48319048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ABCA13-521	NM_152701	exon18	c.G8257A	p.D2753N	AAGAAAGATAATT	.	547	112	426	1	.	0	0	0	0	0
POM121L12	285877	broad.mit.edu	37	7	53103618	53103618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	NM_182595	exon1	c.A254C	p.D85A	CCCAGGACCCCGC	.	97	19	45	6	.	0	0	0	0	0
LIMK1	3984	broad.mit.edu;bcgsc.ca	37	7	73535230	73535230	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LIMK1-523	NM_002314	exon15	c.G1632A	p.G544G	CATCGGGCGGGTG	.	126	6	135	0	.	0	0	0	0	0
LMTK2	22853	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97833339	97833339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LMTK2-1381	NM_014916	exon13	c.T4324G	p.S1442A	AAGCCTTCTCTCC	.	91	39	101	1	.	5	1	4	0	0
SRRT	51593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100485704	100485704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SRRT-92	NM_015908	exon18	c.C2368A	p.Q790K	CCACACCAGACTC	.	148	69	157	0	.	101	57	44	0	0
DLD	1738	bcgsc.ca	37	7	107556128	107556128	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DLD-226	NM_000108	exon9	c.A862T	p.K288X	GATGGAAAAATTG	.	125	14	124	0	.	0	0	0	0	0
CADPS2	93664	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122081599	122081599	+	Silent	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CADPS2-94	NM_001167940	exon16	c.T2319C	p.G773G	TAGAGCACCTTCA	.	427	82	337	2	.	1	1	0	0	0
TMEM176A	55365	broad.mit.edu;ucsc.edu	37	7	150501526	150501526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TMEM176A-92	NM_018487	exon6	c.G632T	p.W211L	CTCTGTGGCTGTA	.	83	14	73	1	.	1652	1647	4	1	0
CHPF2	54480	broad.mit.edu	37	7	150935559	150935559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CHPF2-91	NM_019015	exon4	c.T2111G	p.V704G	TGGAGGTGATGGA	.	128	22	112	17	.	83	79	3	0	1
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41551436	41551436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ANK1-716	NM_001142446	exon30	c.G3635A	p.R1212H	AGCAGGCGCAGGC	.	161	37	176	0	.	0	0	0	0	0
TRPA1	8989	bcgsc.ca	37	8	72964852	72964852	+	Missense_Mutation	SNP	G	G	T	rs147715599	alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TRPA1-230	NM_007332	exon14	c.C1793A	p.T598K	ATGATCGTAAGAA	.	46	4	65	0	G|1.000;A|0.000	0	0	0	0	0
RGS22	26166	broad.mit.edu	37	8	101054051	101054051	+	Silent	SNP	G	G	A	rs200708091		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RGS22-140	NM_015668	exon12	c.C1917T	p.Y639Y	ATAAGCGTATCTT	.	75	3	82	0	G|0.999;A|0.001	0	0	0	0	0
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	3271084	3271084	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RFX3-93	NM_134428	exon11	c.G1121C	p.S374T	ATCAGGCTAAATT	.	122	35	111	0	.	0	0	0	0	0
RASEF	158158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	85624582	85624582	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RASEF-280	NM_152573	exon6	c.T933A	p.Y311X	ATCAGCATAATCA	.	104	22	80	1	.	0	0	0	0	0
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130438137	130438137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	STXBP1-91	NM_001032221	exon14	c.G1165A	p.A389T	ATGCGAGCCATCG	.	92	22	123	0	.	8	7	1	0	0
ENG	2022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130582297	130582297	+	Missense_Mutation	SNP	G	G	A	rs199764615		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ENG-90	NM_001114753	exon9	c.C1154T	p.T385M	AGGCCCGTGATGG	.	40	7	44	0	G|0.999;A|0.000	58	57	1	0	0
ASB6	140459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132400146	132400146	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ASB6-226	NM_017873	exon6	c.A1189T	p.K397X	GGGCTTTGACCTT	.	29	9	47	0	.	27	13	14	0	0
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1540611	1540611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ASMTL-62	NM_004192	exon9	c.C1185G	p.I395M	CTCTCGGATGGCA	.	288	119	561	1	.	28	6	22	0	0
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23723161	23723161	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ACOT9-133	NM_001037171	exon14	c.C1056T	p.I352I	AAACATGATGTCA	.	161	100	166	0	.	33	18	15	0	0
AR	367	hgsc.bcm.edu	37	X	66765167	66765167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	AR-661	NM_000044	exon1	c.A179T	p.Q60L	AGCAGCAGCAGCA	.	77	7	72	0	.	4	4	0	0	0
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101152941	101152941	+	Silent	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZMAT1-131	NM_001011657	exon5	c.T405A	p.I135I	CTGAGCAATAAGT	.	76	36	86	0	.	0	0	0	0	0
MIR1911	100302222	ucsc.edu;bcgsc.ca	37	X	113997817	113997817	+	RNA	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	.	.	.	.	CGCTGACGCTTTG	.	14	5	30	0	.	0	0	0	0	0
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152937048	152937048	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PNCK-207	NM_001039582	exon6	c.C743G	p.A248G	TTCCCAGCCTGGA	.	66	39	101	0	.	1	0	1	0	0
PARP1	142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	226555997	226555999	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PARP1-727	NM_001618	exon16	c.2178_2180del	p.726_727del	.	.	66	17	76	0	.	0	0	0	0	0
C12orf40	283461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40076521	40076521	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	C12orf40-96	NM_001031748	exon8	c.795delA	p.S265fs	.	.	154	36	120	0	.	0	0	0	0	0
IGFBP6	3489	broad.mit.edu	37	12	53491528	53491530	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	IGFBP6-523	NM_002178	exon1	c.27_29del	p.9_10del	GCCACCGCTGCTG	.	102	7	67	0	.	0	0	0	0	0
RAI1	10743	broad.mit.edu	37	17	17699993	17699995	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RAI1-91	NM_030665	exon3	c.3731_3733del	p.1244_1245del	GGAGCCGCAGCAG	.	64	7	61	0	.	0	0	0	0	0
RPS7	6201	bcgsc.ca	37	2	3624203	3624205	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GTC	GTC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RPS7-90	NM_001011	exon4	c.274_276del	p.92_92del	AAGCATGTCGTCT	.	412	99	520	3	.	0	0	0	0	0
ALS2	57679	broad.mit.edu	37	2	202572610	202572610	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ALS2-275	NM_020919	exon28	c.4385delC	p.S1462fs	GATTCAGATCGGG	.	273	24	330	0	.	0	0	0	0	0
ALS2	57679	broad.mit.edu;bcgsc.ca	37	2	202572613	202572623	+	Frame_Shift_Del	DEL	CGGGAATCTGA	CGGGAATCTGA	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	CGGGAATCTGA	CGGGAATCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ALS2-275	NM_020919	exon28	c.4372_4382del	p.1458_1461del	TCAGATCGGGAAT	.	253	22	333	0	.	0	0	0	0	0
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9724894	9724896	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MTMR14-91	NM_022485	exon10	c.930_932del	p.310_311del	.	.	141	71	289	0	.	0	0	0	0	0
MTMR14	64419	hgsc.bcm.edu	37	3	9724894	9724897	+	Frame_Shift_Del	DEL	CCTG	CCTG	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	CCTG	CCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MTMR14-91	NM_022485	exon10	c.930_933del	p.310_311del	.	.	144	54	291	0	.	0	0	0	0	0
AFF4	27125	broad.mit.edu;bcgsc.ca	37	5	132224787	132224791	+	Frame_Shift_Del	DEL	GCTTT	GCTTT	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCTTT	GCTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	AFF4-229	NM_014423	exon14	c.2712_2716del	p.904_906del	AGACAAGCTTTGT	.	460	24	425	0	.	0	0	0	0	0
CDHR3	222256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	105673047	105673047	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CDHR3-23	NM_152750	exon19	c.2562delG	p.L854fs	.	.	170	37	175	0	.	0	0	0	0	0
CBLL1	79872	broad.mit.edu	37	7	107393940	107393940	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CBLL1-229	NM_024814	exon3	c.266delT	p.L89fs	GACACCTTTTTTG	.	370	7	310	0	.	0	0	0	0	0
DLD	1738	broad.mit.edu;bcgsc.ca	37	7	107556127	107556127	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DLD-226	NM_000108	exon9	c.861delA	p.G287fs	AGATGGAAAAATT	.	126	14	130	0	.	0	0	0	0	0
SLC20A2	6575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	42302170	42302170	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SLC20A2-92	NM_001257181	exon6	c.724delA	p.I242X	.	.	126	42	124	0	.	0	0	0	0	0
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	19516367	19516367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SLC24A2-517	NM_020344	exon10	c.1770delT	p.I590fs	.	.	86	29	97	0	.	0	0	0	0	0
PRDX6	9588	bcgsc.ca	37	1	173454533	173454534	+	Frame_Shift_Ins	INS	-	-	AAAAAAA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PRDX6-186	NM_004905	exon3	c.286_287insAAAAAAA	p.E96fs	CCCACAGAAAAGT	.	131	0	152	0	.	0	0	0	0	0
PLCZ1	89869	hgsc.bcm.edu;bcgsc.ca	37	12	18876363	18876364	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PLCZ1-228	NM_033123	exon4	c.249_250insA	p.N83fs	.	.	171	46	108	0	.	0	0	0	0	0
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	113719317	113719318	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MCF2L-228	NM_001112732	exon7	c.674_675insG	p.L225fs	.	.	76	16	106	0	.	0	0	0	0	0
HOXB4	3214	hgsc.bcm.edu;bcgsc.ca	37	17	46655633	46655634	+	In_Frame_Ins	INS	-	-	CTT	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HOXB4-515	NM_024015	exon1	c.49_50insAAG	p.F17delinsKF	.	.	188	36	166	0	.	0	0	0	0	0
REV1	51455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	100019396	100019397	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	REV1-92	NM_016316	exon20	c.3340_3341insT	p.D1114_G1115delinsX	.	.	98	27	124	0	.	0	0	0	0	0
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9724897	9724898	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MTMR14-91	NM_022485	exon10	c.933_934insA	p.L311fs	.	.	143	67	291	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47165390	47165391	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SETD2-1273	NM_014159	exon3	c.736_737insT	p.V246fs	.	.	52	30	72	0	.	0	0	0	0	0
PIR	8544	broad.mit.edu;bcgsc.ca	37	X	15403223	15403224	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PIR-131	NM_001018109	exon10	c.776_777insTGA	p.N259delinsMN	TTGGTGTTCATCA	.	28	9	41	0	.	0	0	0	0	0
KCNE3	10008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74168349	74168350	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	KCNE3-69	NM_005472	exon3	c.A259T	p.K87L	TACGCTTGTCCAC	.	87.0	19.0	120.0	0.0	.	0	0	0	0	0
OR5P2	120065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	7818418	7818419	+	Missense_Mutation	DNP	TG	TG	AA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	OR5P2-496	NM_153444	exon1	c.C71T	p.P24L	AGGATTGGATCAT	.	62.0	15.0	67.0	0.0	.	0	0	0	0	0