Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NBPF1	55672	broad.mit.edu	37	1	16907371	16907371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	.	.	.	.	CAAGGGCCGTGGC	.	2347	68	2426	1	.	94	90	4	0	0
UBXN11	91544	bcgsc.ca	37	1	26608825	26608825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBXN11-91	NM_183008	exon16	c.A1528G	p.S510G	AGGGACTGGGGCC	.	87	6	69	1	.	0	0	0	0	0
ANGPTL3	27329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63066787	63066787	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANGPTL3-130	NM_014495	exon3	c.A641A	p.K214K	CAGAAATTTCTCT	.	128	18	142	0	.	6	1	5	0	0
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145562384	145562384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANKRD35-95	NM_144698	exon10	c.G2072C	p.R691P	AGCTGCGGAAGCT	.	49	7	61	0	.	0	0	0	0	0
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169094257	169094257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ATP1B1-540	NM_001677	exon3	c.T362G	p.M121R	ATGACATGATTTT	.	320	60	302	0	.	602	266	335	1	0
AGT	183	hgsc.bcm.edu;broad.mit.edu	37	1	230845905	230845905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGT-226	NM_000029	exon2	c.C692A	p.T231N	ACAGGGGTATAGA	.	95	11	119	2	.	6	3	3	0	0
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235386544	235386544	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARID4B-228	NM_016374	exon13	c.A1002G	p.G334G	TCGATATCCAAGT	.	42	6	48	0	.	2	2	0	0	0
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101458575	101458575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ENTPD7-91	NM_020354	exon10	c.G1295C	p.G432A	GCATTGGTGGCCG	.	69	12	83	0	.	9	3	6	0	0
NFKB2	4791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104156717	104156717	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NFKB2-522	NM_001077494	exon6	c.C300T	p.D100D	CAGTGACCCACCT	.	54	7	53	0	.	35	19	16	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	rs149562922		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MUC2-90	NM_002457	exon30	c.A4462C	p.T1488P	CCTCCAACAACCA	.	16	6	1	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	5	4	0	0	.	0	0	0	0	0
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu	37	11	4904096	4904096	+	Silent	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR51T1-115	NM_001004759	exon1	c.A1048C	p.R350R	GGTCTTAGGGGAA	.	116	12	110	0	.	0	0	0	0	0
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6291417	6291417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CCKBR-574	NM_176875	exon3	c.G503A	p.R168H	AGACGCGCTCCCA	.	51	11	52	0	.	0	0	0	0	0
MAPK8IP1	9479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45926284	45926284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MAPK8IP1-973	NM_005456	exon9	c.C1792T	p.R598W	ACCCGCCGGCTCA	.	116	21	149	0	.	14	7	7	0	0
MADD	8567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47345285	47345285	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MADD-682	NM_130475	exon31	c.G4441C	p.E1481Q	TGGTACGAGAAGC	.	96	18	88	0	.	27	23	4	0	0
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63064875	63064875	+	Missense_Mutation	SNP	C	C	T	rs200183991		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC22A10-92	NM_001039752	exon3	c.C607T	p.R203C	GTACTACGCTTCT	.	232	31	217	0	.	0	0	0	0	0
MALAT1	378938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65266413	65266413	+	RNA	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	.	.	.	.	ACCGAAGAACTAC	.	110	19	101	0	.	0	0	0	0	0
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71724282	71724282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NUMA1-633	NM_006185	exon15	c.G4267A	p.A1423T	GCTGAGCTGTTCG	.	123	25	119	0	.	107	60	47	0	0
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71948376	71948376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	INPPL1-660	NM_001567	exon26	c.C3088T	p.R1030W	CACCACCGGCACC	.	134	25	174	1	.	105	73	32	0	0
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73021440	73021440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARHGEF17-227	NM_014786	exon1	c.T1757C	p.I586T	CCCTCATCGTCCA	.	88	13	84	0	.	19	9	10	0	0
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76944148	76944148	+	Silent	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GDPD4-69	NM_182833	exon13	c.C1311G	p.A437A	GCACCAGGCCAGT	.	87	9	83	0	.	0	0	0	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877690	82877690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PCF11-23	NM_015885	exon5	c.A1751G	p.N584S	AGGAGAATGTAGA	.	104	20	113	0	.	8	2	6	0	0
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104825523	104825523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CASP4-660	NM_001225	exon2	c.G213A	p.M71I	AAGAAGCATTTGT	.	224	37	222	0	.	50	33	17	0	0
CLDN25	644672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113651037	113651037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_001101389	exon1	c.A520G	p.I174V	GCTGGTATTTTCC	.	76	14	69	1	.	0	0	0	0	0
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2909578	2909578	+	Silent	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FKBP4-226	NM_002014	exon8	c.T867G	p.A289A	GCAAGCTTTACTA	.	58	10	49	0	.	135	76	59	0	0
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6707540	6707540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CHD4-228	NM_001273	exon11	c.C1534T	p.Q512X	GTGGCTGACCCCA	.	278	43	285	0	.	72	71	1	0	0
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26217472	26217472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RASSF8-90	NM_007211	exon4	c.A145T	p.T49S	AGAGATACTGAAA	.	179	32	164	0	.	1	1	0	0	0
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40681240	40681240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LRRK2-533	NM_198578	exon20	c.A2588T	p.N863I	ATGGAAATTTTTC	.	110	22	94	0	.	46	27	19	0	0
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	42858293	42858293	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PRICKLE1-518	NM_001144882	exon7	c.C1543T	p.Q515X	ACCACTGTGTTTC	.	157	29	131	0	.	17	11	6	0	0
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu	37	12	43858498	43858498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ADAMTS20-795	NM_025003	exon10	c.G1405A	p.E469K	TTTCTTCATCTGG	.	100	9	96	0	.	0	0	0	0	0
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46318586	46318586	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCAF11-93	NM_004719	exon12	c.A3831T	p.P1277P	TGGTGGTGGTAGT	.	92	18	127	0	.	7	4	3	0	0
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57922959	57922959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MBD6-516	NM_052897	exon13	c.C2954T	p.P985L	CTCTGCCTCCCCG	.	93	23	121	0	.	57	39	18	0	0
USP15	9958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62795034	62795034	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	USP15-1084	NM_001252078	exon21	c.T2742A	p.T914T	CTCCACTGCATCT	.	71	17	82	0	.	5	3	2	0	0
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105433493	105433493	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ALDH1L2-91	NM_001034173	exon17	c.G2043A	p.K681K	ATACCTCTTCATG	.	115	17	98	0	.	0	0	0	0	0
PXN	5829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120653399	120653399	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PXN-660	NM_001080855	exon7	c.C897T	p.G299G	CCGCCCGCCGTCC	.	75	15	110	0	.	9	9	0	0	0
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20612708	20612708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR4N5-69	NM_001004724	exon1	c.T814G	p.S272A	GTAGTTTCTCTTT	.	437	79	374	0	.	0	0	0	0	0
C14orf182	283551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50472313	50472313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C14orf182-90	NM_001012706	exon1	c.A205G	p.R69G	CGGACCTTGGAGG	.	160	24	183	0	.	0	0	0	0	0
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75516130	75516130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MLH3-228	NM_014381	exon2	c.A229T	p.K77X	GGCATTTACTGGT	.	100	17	110	0	.	2	1	1	0	0
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91642321	91642321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C14orf159-92	NM_001102368	exon7	c.T651A	p.D217E	CGGGGATGCCATG	.	102	18	94	0	.	50	32	18	0	0
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102323022	102323022	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PPP2R5C-659	NM_001161725	exon4	c.188-1G>A	.	TTTTCAGATGTTC	.	311	56	353	0	.	0	0	0	0	0
BAG5	9529	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	104027517	104027517	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	BAG5-229	NM_001015049	exon2	c.T108A	p.T36T	GTGTTCAGTTTCA	.	179	34	169	0	.	0	0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409159	105409159	+	Missense_Mutation	SNP	G	G	A	rs202233797	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AHNAK2-47	NM_138420	exon7	c.C12629T	p.A4210V	AGGCCGGCTCCCT	.	223	4	262	0	.	10	10	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413291	105413291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AHNAK2-47	NM_138420	exon7	c.G8497T	p.E2833X	AGGCCTCGATGGA	.	400	7	427	0	.	57	45	0	12	0
TYRO3	7301	hgsc.bcm.edu	37	15	41854918	41854918	+	Splice_Site	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TYRO3-1388	NM_006293	exon4	c.580+2T>G	.	AACAGGTGAGCAG	.	19	4	22	2	.	0	0	0	0	0
SCG3	29106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51993377	51993377	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCG3-91	NM_013243	exon10	c.A1143G	p.G381G	ATATGGAAGCTTG	.	104	24	123	0	.	0	0	0	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2807812	2807812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SRRM2-93	NM_016333	exon4	c.A381T	p.L127F	AGAATTAAATGAG	.	207	32	149	0	.	74	57	17	0	0
CLEC16A	23274	broad.mit.edu	37	16	11217780	11217780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CLEC16A-92	NM_015226	exon20	c.G2450A	p.R817H	CAAGGCGCATGAA	.	26	3	19	0	.	51	51	0	0	0
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28157419	28157419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	XPO6-227	NM_015171	exon9	c.A1330T	p.N444Y	ACCTGTTGAGAAC	.	292	80	242	0	.	0	0	0	0	0
MVP	9961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29848119	29848119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MVP-93	NM_017458	exon7	c.T749G	p.L250R	AGTGGCTGGTAAC	.	82	6	79	0	.	780	665	115	0	0
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31090723	31090723	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF646-153	NM_014699	exon2	c.G3078A	p.E1026E	TCAAGAGGGAGCA	.	232	34	252	0	.	12	10	2	0	0
HAS3	3038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69143465	69143465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	HAS3-90	NM_138612	exon2	c.T167A	p.L56Q	TGCACCTGCTCAT	.	100	13	88	0	.	1	1	0	0	0
SLC38A8	146167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84063153	84063153	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC38A8-68	NM_001080442	exon5	c.T636C	p.P212P	GGAGGCAGGGCTG	.	81	29	68	0	.	0	0	0	0	0
TMEM220	388335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10626593	10626593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TMEM220-90	NM_001004313	exon5	c.C341G	p.S114C	TTTGAGGAACTGT	.	125	18	117	0	.	0	0	0	0	0
FBXW10	10517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18653137	18653137	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FBXW10-91	NM_001267585	exon3	c.T773A	p.L258X	ATCTATTGGTTGA	.	314	49	302	0	.	0	0	0	0	0
DHX58	79132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40262859	40262859	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DHX58-90	NM_024119	exon5	c.A443T	p.Q148L	AGGTACTGGCTCA	.	140	24	152	0	.	20	14	6	0	0
COL1A1	1277	hgsc.bcm.edu;bcgsc.ca	37	17	48265470	48265470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL1A1-986	NM_000088	exon44	c.C3248G	p.A1083G	CCACGGGCGCCAA	.	20	3	29	1	.	0	0	0	0	0
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu	37	17	74303551	74303551	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	QRICH2-94	NM_032134	exon1	c.G31C	p.A11P	CCCTGGCAAAGCT	.	49	4	48	0	.	0	0	0	0	0
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47375980	47375980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MYO5B-72	NM_001080467	exon32	c.A4272T	p.K1424N	TTGCTTTTTGAGC	.	494	65	475	0	.	85	48	37	0	0
FAM108A1	81926	broad.mit.edu	37	19	1880041	1880041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FAM108A1-90	NM_031213	exon4	c.T559C	p.S187P	GGCGGGAGCCCAG	.	56	6	55	3	.	128	120	6	1	1
ADAMTS10	81794	broad.mit.edu	37	19	8665858	8665858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ADAMTS10-229	NM_030957	exon6	c.A764G	p.H255R	CGCCCGTGATAGG	.	117	3	119	0	.	6	6	0	0	0
EPOR	2057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11489162	11489162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	EPOR-523	NM_000121	exon8	c.T1025C	p.M342T	GCCTGCATCGTCC	.	66	16	82	1	.	24	23	1	0	0
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24309780	24309780	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF254-90	NM_203282	exon4	c.A978G	p.E326E	TGAAGAATGTGGC	.	94	12	123	0	.	2	1	1	0	0
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34924279	34924279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBA2-227	NM_005499	exon4	c.G320A	p.R107Q	TTTTCCGACAGTT	.	197	36	223	0	.	14	11	3	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260723	42260723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CEACAM6-91	NM_002483	exon2	c.G280A	p.A94T	GGGCCCGCATACA	.	348	6	331	1	.	1	1	0	0	0
LAIR1	3903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54872527	54872527	+	Silent	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LAIR1-94	NM_021706	exon3	c.G360T	p.V120V	ACCTTTCACCAGC	.	197	37	226	0	.	0	0	0	0	0
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	58018029	58018029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF773-91	NM_198542	exon4	c.G566A	p.R189K	GAAAAAGGCATTA	.	56	5	45	0	.	13	13	0	0	0
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu	37	19	58018032	58018032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF773-91	NM_198542	exon4	c.A569G	p.H190R	AAAGGCATTACAA	.	61	5	45	0	.	12	12	0	0	0
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54135515	54135515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PSME4-275	NM_014614	exon24	c.A2726G	p.H909R	AATTCATGCTTGT	.	46	8	62	0	.	29	20	9	0	0
PCBP1	5093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70314950	70314950	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PCBP1-226	NM_006196	exon1	c.A75G	p.V25V	GGAAGTAGGAAGC	.	164	40	176	0	.	436	266	170	0	0
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166915109	166915109	+	Silent	SNP	C	C	T	rs121917959	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCN1A-147	NM_001165964	exon2	c.G354A	p.R118R	TATTTTCCTAAGA	.	95	13	80	0	.	0	0	0	0	0
UBR3	130507	hgsc.bcm.edu;bcgsc.ca	37	2	170815017	170815017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBR3-68	NM_172070	exon24	c.G3615A	p.M1205I	CTTTATGGAAACT	.	134	26	123	0	.	6	4	2	0	0
ZNF385B	151126	ucsc.edu;bcgsc.ca	37	2	180308133	180308133	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF385B-23	NM_152520	exon10	c.T1260C	p.P420P	TGCGAGAGGTGAG	.	17	4	29	0	.	12	2	10	0	0
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182765433	182765433	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SSFA2-153	NM_001130445	exon7	c.T514C	p.L172L	TCAGAATTGTTGG	.	103	18	99	0	.	0	0	0	0	0
GLS	2744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	191797555	191797555	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GLS-92	NM_001256310	exon15	c.A1764G	p.V588V	TGTAGTATATAGA	.	64	13	51	0	.	77	44	33	0	0
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201478584	201478584	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AOX1-96	NM_001159	exon15	c.C1506T	p.S502S	AGTCTCCCTTTTG	.	76	17	71	0	.	101	38	63	0	0
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227872134	227872134	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL4A4-142	NM_000092	exon48	c.G4980A	p.Q1660Q	GGAAAACTGCAAG	.	570	88	606	1	.	4	2	2	0	0
DNAJB3	414061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234652351	234652351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_001001394	exon1	c.C212T	p.A71V	GCCCCCGCCTCGC	.	197	44	220	1	.	0	0	0	0	0
DNAJB3	414061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234652372	234652372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_001001394	exon1	c.T191C	p.I64T	TCATAGATATCGC	.	239	37	254	0	.	1	1	0	0	0
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238234213	238234213	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL6A3-526	NM_004369	exon43	c.T9483A	p.V3161V	AGCGCAAACCTTT	.	231	53	224	0	.	0	0	0	0	0
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239184526	239184526	+	Silent	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PER2-154	NM_022817	exon4	c.T306G	p.S102S	TTTCGAAGACTGG	.	116	19	110	0	.	4	2	2	0	0
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31015986	31015986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ASXL1-2057	NM_015338	exon4	c.A308G	p.E103G	AGCCAGAGGACAC	.	132	14	130	1	.	9	6	3	0	0
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	36989402	36989402	+	Silent	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LBP-91	NM_004139	exon6	c.T633G	p.P211P	ACAGCCTTATCTC	.	209	28	231	1	.	0	0	0	0	0
ZNF831	128611	broad.mit.edu	37	20	57769662	57769662	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF831-126	NM_178457	exon1	c.G3588A	p.A1196A	GCCCGCGGAGCAG	.	47	3	56	0	.	1	1	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46902710	46902710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL18A1-90	NM_030582	exon14	c.G2216A	p.G739D	TACAGGGTGAAGC	.	98	16	126	0	.	0	0	0	0	0
SLC2A11	66035	hgsc.bcm.edu;broad.mit.edu	37	22	24226511	24226511	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC2A11-91	NM_030807	exon12	c.C1206T	p.A402A	CCTGGCCACAGAG	.	75	12	61	0	.	13	7	6	0	0
NF2	4771	hgsc.bcm.edu;ucsc.edu	37	22	30069350	30069350	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NF2-4696	NM_000268	exon12	c.T1215C	p.A405A	AGAGGCTGAGCAG	.	10	3	15	0	.	40	23	17	0	0
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41076973	41076973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MCHR1-90	NM_005297	exon2	c.A310T	p.S104C	ACGGGGAGCATCT	.	89	12	81	0	.	1	1	0	0	0
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42149973	42149973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MEI1-70	NM_152513	exon17	c.T1874G	p.V625G	ACCAGGTGTGTTC	.	112	15	92	1	.	0	0	0	0	0
C22orf26	55267	broad.mit.edu	37	22	46449683	46449683	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C22orf26-90	NM_018280	exon1	c.C291T	p.H97H	GGCACCGTGCCAG	.	4	3	10	0	.	0	0	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46790151	46790151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CELSR1-525	NM_014246	exon14	c.T5852A	p.L1951H	CACGGAAGGTCGA	.	60	10	68	0	.	0	0	0	0	0
NGLY1	55768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	25773885	25773885	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NGLY1-135	NM_018297	exon9	c.T1350A	p.P450P	AGGTTTAGGGGTT	.	138	50	152	1	.	37	6	31	0	0
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179334831	179334831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NDUFB5-91	NM_002492	exon4	c.A341C	p.K114T	ATTATAAGGTTTG	.	76	28	77	0	.	0	0	0	0	0
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183706444	183706444	+	Missense_Mutation	SNP	C	C	T	rs200810558		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ABCC5-137	NM_005688	exon4	c.G359A	p.R120H	GCCACACGGGCCA	.	89	28	92	0	C|0.999;T|0.000	24	22	2	0	0
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74014608	74014608	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANKRD17-234	NM_198889	exon8	c.A1489T	p.N497Y	CATCATTGACCTC	.	90	15	91	0	.	3	3	0	0	0
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	83719607	83719607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCD5-91	NM_024906	exon1	c.G84C	p.E28D	GCCGCCCTCAGAG	.	39	5	33	0	.	6	2	4	0	0
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156725753	156725753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_000857	exon12	c.A1563G	p.I521M	AACAATAGGGATA	.	165	21	161	0	.	0	0	0	0	0
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	178243705	178243705	+	Silent	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NEIL3-660	NM_018248	exon2	c.C249G	p.L83L	GGAGCTCTTTATG	.	243	32	194	1	.	2	1	1	0	0
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186380443	186380443	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CCDC110-90	NM_152775	exon6	c.A1298T	p.N433I	AGGTAATTCTGTA	.	261	51	285	0	.	0	0	0	0	0
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31983432	31983432	+	Silent	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PDZD2-563	NM_178140	exon2	c.C648G	p.T216T	ACGAACCAGAAAG	.	138	30	149	0	.	0	0	0	0	0
AGXT2	64902	hgsc.bcm.edu;broad.mit.edu	37	5	35026613	35026613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGXT2-94	NM_031900	exon8	c.T772G	p.C258G	GGCAGCAGTCTGC	.	82	8	54	0	.	2	2	0	0	0
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50683584	50683584	+	Splice_Site	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ISL1-515	NM_002202	exon3	c.478+1G>T	.	TGGCAGGTACTCC	.	51	18	43	0	.	0	0	0	0	0
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71739940	71739940	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF366-91	NM_152625	exon5	c.C1878G	p.Y626X	CACCTCGTAGCAG	.	372	65	343	0	.	1	1	0	0	0
MCC	4163	broad.mit.edu;bcgsc.ca	37	5	112458403	112458403	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MCC-69	NM_001085377	exon6	c.T1005A	p.S335S	CATGGTAGACTGG	.	68	6	69	0	.	11	7	4	0	0
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140222316	140222316	+	Silent	SNP	G	G	C	rs202126810	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PCDHA8-92	NM_031856	exon1	c.G1410C	p.P470P	CCCGCCGGGCTGC	.	123	16	139	0	G|0.999;T|0.001	3	2	0	1	0
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	142513635	142513635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARHGAP26-660	NM_015071	exon19	c.T1802A	p.L601Q	GGCCCCTGACGCT	.	187	31	188	0	.	28	21	7	0	0
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145641187	145641187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RBM27-70	NM_018989	exon13	c.T2008G	p.L670V	CGAGTCTTGTGGC	.	229	34	176	0	.	10	10	0	0	0
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	173370039	173370039	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CPEB4-90	NM_030627	exon4	c.T1269G	p.Y423X	GACATATGGGCGA	.	328	44	266	0	.	0	0	0	0	0
MAK	4117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	10796389	10796389	+	Missense_Mutation	SNP	C	C	G	rs201812469	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MAK-335	NM_005906	exon9	c.G985C	p.D329H	CCTGATCGATTAT	.	130	26	142	0	C|0.999;T|0.000	0	0	0	0	0
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30679993	30679993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MDC1-273	NM_014641	exon5	c.G1726A	p.D576N	CACAGTCCCCATG	.	63	15	74	0	.	8	5	3	0	0
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31778274	31778274	+	Silent	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	HSPA1L-230	NM_005527	exon2	c.C1476A	p.A492A	GTCCGTGGCTGTG	.	197	35	217	1	.	0	0	0	0	0
SLC39A7	7922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33169242	33169242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC39A7-67	NM_006979	exon1	c.G220C	p.G74R	TGGCATGGACATA	.	100	21	115	0	.	189	102	87	0	0
MAPK14	1432	bcgsc.ca	37	6	36040750	36040750	+	Silent	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MAPK14-1444	NM_139012	exon4	c.C406A	p.R136R	ATTCTCCGAGGTC	.	57	4	53	0	.	2	2	0	0	0
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110086287	110086287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FIG4-69	NM_014845	exon14	c.A1506T	p.K502N	GGGAAAATGTGCT	.	135	25	114	0	.	32	21	11	0	0
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	20778604	20778604	+	Splice_Site	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ABCB5-158	NM_001163941	exon24	c.2868-2A>G	.	TTTGATAGAGTTT	.	48	7	51	0	.	0	0	0	0	0
SBDS	51119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66459200	66459200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SBDS-523	NM_016038	exon2	c.A257G	p.Q86R	CCCACCTGCTTAC	.	188	33	151	0	.	0	0	0	0	0
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107115465	107115465	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GPR22-92	NM_005295	exon3	c.T960A	p.S320S	TATTTCTACATTT	.	116	22	129	0	.	0	0	0	0	0
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123136764	123136764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	IQUB-156	NM_178827	exon7	c.A1220G	p.Y407C	GCATTATAAAGAA	.	84	17	85	0	.	0	0	0	0	0
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	T	C	rs121913370		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	BRAF-92146	NM_004333	exon15	c.A1742G	p.N581S	AATATATCTGAGG	.	106	18	104	0	.	0	0	0	0	0
C9orf66	157983	bcgsc.ca	37	9	214551	214551	+	Silent	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C9orf66-514	NM_152569	exon1	c.C846A	p.P282P	TTTGTGGGGCTCC	.	55	5	66	0	.	8	7	1	0	0
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86485505	86485505	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	KIF27-523	NM_017576	exon12	c.A2686T	p.K896X	CAGCTTTCGGTTT	.	143	18	128	0	.	1	1	0	0	0
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90254289	90254289	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DAPK1-359	NM_004938	exon5	c.G444C	p.L148F	GCTTTTGGATAGA	.	179	27	165	0	.	34	27	7	0	0
PSMD5	5711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123591454	123591454	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PSMD5-90	NM_005047	exon5	c.A594G	p.E198E	TAAAGATTCTGGT	.	110	17	94	0	.	12	7	5	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131339498	131339498	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SPTAN1-158	NM_003127	exon7	c.T876C	p.A292A	TCAGGCTCTGCTT	.	203	43	201	0	.	61	41	20	0	0
OBP2B	29989	hgsc.bcm.edu	37	9	136083879	136083879	+	Missense_Mutation	SNP	C	C	G	rs28584111		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OBP2B-68	NM_014581	exon2	c.G183C	p.K61N	TTCCAACTTCCCA	.	25	2	57	1	.	0	0	0	0	0
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138683918	138683918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	KCNT1-137	NM_020822	exon31	c.G3619A	p.V1207M	GCTCACGTGGCCA	.	42	7	24	0	.	0	0	0	0	0
ARSD	414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2826885	2826885	+	Splice_Site	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARSD-130	NM_001669	exon10	c.1299-2A>G	.	TCACCCTGATTTC	.	25	7	22	0	.	0	0	0	0	0
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66838463	66838463	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GRIP1-494	NM_001178074	exon12	c.1432delA	p.I478fs	.	.	106	22	118	0	.	0	0	0	0	0
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36382392	36382396	+	Frame_Shift_Del	DEL	GGAGA	GGAGA	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GGAGA	GGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DCLK1-826	NM_004734	exon14	c.1828_1832del	p.610_611del	.	.	175	35	170	0	.	0	0	0	0	0
F10	2159	broad.mit.edu;bcgsc.ca	37	13	113803360	113803360	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	F10-227	NM_000504	exon8	c.996delC	p.I332fs	CCCCATCACCTTC	.	184	26	166	0	.	0	0	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	45667882	45667882	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FANCM-569	NM_020937	exon22	c.5752delT	p.Y1918fs	.	.	107	22	126	0	.	0	0	0	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30723210	30723210	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SRCAP-94	NM_006662	exon12	c.1547delA	p.E516fs	.	.	78	13	73	0	.	0	0	0	0	0
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	235962373	235962373	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SH3BP4-94	NM_014521	exon6	c.2805delC	p.L935fs	.	.	163	34	247	0	.	0	0	0	0	0
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38891987	38891988	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCN11A-99	NM_014139	exon25	c.4311_4312del	p.1437_1438del	.	.	136	39	121	0	.	0	0	0	0	0
CABS1	85438	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71201158	71201158	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CABS1-93	NM_033122	exon1	c.402delT	p.D134fs	.	.	116	23	95	0	.	0	0	0	0	0
TPBG	7162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83075159	83075159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TPBG-514	NM_001166392	exon2	c.481delG	p.A161fs	.	.	204	31	245	0	.	0	0	0	0	0
OR8I2	120586	broad.mit.edu	37	11	55861307	55861308	+	Frame_Shift_Ins	INS	-	-	T	rs112181516		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR8I2-113	NM_001003750	exon1	c.524_525insT	p.H175fs	TCAATCATTTTTT	.	207	7	226	0	-|0.500;T|0.500	0	0	0	0	0
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58633189	58633190	+	Frame_Shift_Ins	INS	-	-	CCAC	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CNOT1-95	NM_016284	exon2	c.53_54insGTGG	p.D18fs	.	.	121	25	95	0	.	0	0	0	0	0
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	70451754	70451755	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LMBRD1-91	NM_018368	exon6	c.489_490insTT	p.L163fs	.	.	90	14	95	0	.	0	0	0	0	0
RHOBTB1	9886	hgsc.bcm.edu;broad.mit.edu	37	10	62648933	62648934	+	Nonsense_Mutation	DNP	TC	TC	AG	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RHOBTB1		exon6	c.G492C	p.KR164N*	CCCTCTCTTTATG	.	119.0	13.0	107.0	1.0	.	0	0	0	0	0
OR5D14	219436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55563325	55563326	+	Missense_Mutation	DNP	CT	CT	AA	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR5D14		exon1	c.T295A	p.SC98RS	TTTAGCTGCATGA	.	81.0	7.0	91.0	0.0	.	0	0	0	0	0
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu	37	17	45699223	45699224	+	Nonsense_Mutation	DNP	GC	GC	TT	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NPEPPS		exon23	c.C2698T	p.KR899N*	CTAAAGCGAGATG	.	54.0	4.0	60.0	0.0	.	0	0	0	0	0
AGR2	10551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	16837318	16837319	+	Splice_Site	DNP	AC	AC	GA	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGR2		exon7	c.331-1G>T	.	TTCATACTAAAAT	.	59.0	13.0	64.0	0.0	.	0	0	0	0	0