Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6639633	6639633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TAS1R1-516	NM_138697	exon6	c.G2515A	p.G839S	CGCTGCGGCTCCA	.	32	12	32	0	.	0	0	0	0	0
SZT2	23334	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43902958	43902958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SZT2-144	NM_015284	exon42	c.C5980T	p.R1994C	CATTCACGCCTCA	.	107	52	123	1	.	4	0	4	0	0
NOTCH2	4853	bcgsc.ca	37	1	120539926	120539926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NOTCH2-1441	NM_024408	exon4	c.C445G	p.L149V	GAGACAGGCAGGC	.	362	33	350	3	.	0	0	0	0	0
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151785765	151785765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	RORC-227	NM_005060	exon8	c.C1124T	p.T375M	AAGACCGTGCGGT	.	97	41	79	0	.	13	7	6	0	0
FASLG	356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	172634980	172634980	+	Missense_Mutation	SNP	A	A	G	rs111238176		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	FASLG-618	NM_000639	exon4	c.A670G	p.M224V	CTGGTGATGATGG	.	103	46	94	0	A|0.500;G|0.500	0	0	0	0	0
SEC16B	89866	broad.mit.edu	37	1	177902408	177902408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SEC16B-93	NM_033127	exon22	c.C2764A	p.P922T	TGGTGGGCTTCGA	.	160	9	136	2	.	14	14	0	0	0
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207112530	207112530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PIGR-92	NM_002644	exon3	c.T322C	p.Y108H	ACTTGTAGCGCCC	.	158	56	149	0	.	32	14	18	0	0
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220324630	220324630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	RAB3GAP2-90	NM_012414	exon35	c.T4145C	p.I1382T	GCTTCAATGAGGT	.	113	8	102	0	.	1	1	0	0	0
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70670106	70670106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	DDX50-91	NM_024045	exon3	c.C428A	p.P143H	ATTTTCCTATTTC	.	39	11	72	0	.	3	3	0	0	0
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112540726	112540726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	.	NM_001134363	exon2	c.T359C	p.L120P	CAGTCCTGAACCA	.	87	30	90	0	.	4	1	3	0	0
SLC5A12	159963	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26720060	26720060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SLC5A12-92	NM_178498	exon7	c.G844T	p.G282C	AGAGACCCAGCAA	.	142	80	137	1	.	0	0	0	0	0
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61897408	61897408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	INCENP-227	NM_001040694	exon4	c.G409A	p.A137T	ACCATGGCATTGG	.	72	29	77	0	.	0	0	0	0	0
PDE2A	5138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72293520	72293520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PDE2A-156	NM_002599	exon21	c.C1819A	p.P607T	AACGAGGGGTATA	.	108	56	77	1	.	0	0	0	0	0
ARHGAP42	143872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	100641096	100641096	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	.	NM_152432	exon2	c.A177T	p.K59N	GCAGAAATTTTCC	.	47	22	61	0	.	0	0	0	0	0
SSPN	8082	hgsc.bcm.edu	37	12	26348668	26348668	+	Silent	SNP	C	C	G	rs200655450		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SSPN-90	NM_005086	exon1	c.C63G	p.A21A	GGACGCCGCTGGG	.	16	6	1	0	C|0.997;G|0.003	0	0	0	0	0
SLC25A3	5250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	98995295	98995295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SLC25A3-90	NM_005888	exon8	c.T1078A	p.L360I	CTTGGGTTAACTC	.	76	48	72	0	.	573	229	343	1	0
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21793036	21793036	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	RPGRIP1-140	NM_020366	exon14	c.C2022T	p.P674P	ACAGCCCCTCTAT	.	126	46	109	0	.	0	0	0	0	0
POMT2	29954	broad.mit.edu;bcgsc.ca	37	14	77769260	77769260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	POMT2-91	NM_013382	exon5	c.T574C	p.Y192H	GGATGTACTGGGA	.	96	7	72	0	.	5	5	0	0	0
FAM98B	283742	hgsc.bcm.edu	37	15	38776827	38776827	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	FAM98B-515	NM_173611	exon8	c.T1269A	p.G423G	TGGTGGTGGTGGT	.	27	4	21	0	.	0	0	0	0	0
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81181040	81181040	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	KIAA1199-93	NM_018689	exon8	c.869-2A>T	.	TCTGACAGGACAT	.	52	27	57	0	.	0	0	0	0	0
SETD6	79918	broad.mit.edu	37	16	58549753	58549753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SETD6-91	NM_024860	exon2	c.G86T	p.C29F	GCTGGTGCCGGCG	.	69	8	16	0	.	1	0	1	0	0
GLTPD2	388323	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4693110	4693110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	GLTPD2-68	NM_001014985	exon4	c.A395G	p.K132R	TCACCAAGGTGAC	.	157	88	86	0	.	7	3	4	0	0
KDM6B	23135	broad.mit.edu	37	17	7751756	7751756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	KDM6B-205	NM_001080424	exon11	c.C2150T	p.A717V	ACGAAGCAGGCGT	.	74	5	46	0	.	11	11	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	70	15	24	0	.	0	0	0	0	0
TRIM25	7706	bcgsc.ca	37	17	54990934	54990934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TRIM25-289	NM_005082	exon1	c.C416T	p.A139V	TGGAAGGCGGGGC	.	259	149	119	4	.	4	0	4	0	0
SETBP1	26040	broad.mit.edu	37	18	42281356	42281356	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SETBP1-155	NM_001130110	exon2	c.C45T	p.G15G	AGGGGGCGAGTCA	.	79	4	90	0	.	2	2	0	0	0
ZNF516	9658	broad.mit.edu	37	18	74154244	74154244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ZNF516-69	NM_014643	exon3	c.C767A	p.A256D	CTGAAGGCCTGGC	.	91	6	56	1	.	0	0	0	0	0
CDC37	11140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10506875	10506875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	CDC37-522	NM_007065	exon2	c.G107A	p.R36Q	TCCACCCGGGCCT	.	141	69	128	0	.	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	LTBP4-93	.	.	.	.	CCGGGCGCCGTCG	.	83	11	23	1	.	4	4	0	0	0
GALNT14	79623	broad.mit.edu	37	2	31154974	31154974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	GALNT14-93	NM_001253826	exon11	c.C1033A	p.P345T	CGTAGGGGTGCTT	.	107	5	61	1	.	50	50	0	0	0
PPM1B	5495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44457731	44457731	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PPM1B-227	NM_002706	exon6	c.T1314C	p.S438S	TACTTCTTCGAAC	.	197	131	150	0	.	19	5	14	0	0
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	45879246	45879246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PRKCE-1019	NM_005400	exon1	c.G7C	p.V3L	ATGGTAGTGTTCA	.	55	28	33	0	.	1	1	0	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215865727	215865727	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ABCA12-99	NM_173076	exon22	c.C2881G	p.P961A	TAGAAGGAAGCTT	.	51	18	46	0	.	0	0	0	0	0
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218713569	218713569	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TNS1-156	NM_022648	exon17	c.G1296C	p.L432F	GGGACTCAAGGCA	.	125	47	98	0	.	10	6	4	0	0
FAM182B	728882	ucsc.edu	37	20	25755562	25755562	+	RNA	SNP	A	A	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	.	.	.	.	.	GGGACCACTCCGG	.	78	12	18	1	.	1	1	0	0	0
GATA5	140628	hgsc.bcm.edu	37	20	61050059	61050059	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	GATA5-90	NM_080473	exon2	c.C519A	p.T173T	ACCGAAGGTGGGC	.	83	5	11	0	.	0	0	0	0	0
COL20A1	57642	broad.mit.edu	37	20	61945126	61945126	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	COL20A1-90	NM_020882	exon18	c.G2241T	p.L747L	CAACCTGGCCCTG	.	107	4	24	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	162	12	164	0	.	0	0	0	0	0
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41911896	41911896	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ACO2-290	NM_001098	exon6	c.T810C	p.P270P	CGGGCCTGGTGTA	.	124	69	114	0	.	50	26	24	0	0
C22orf34	348645	bcgsc.ca	37	22	50017005	50017005	+	RNA	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	.	.	.	.	.	AGTGGCTATGGCT	.	87	37	107	0	.	0	0	0	0	0
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52526011	52526011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NISCH-93	NM_007184	exon21	c.C4028T	p.P1343L	AGGCCCCAGCCCT	.	137	36	107	0	.	33	21	12	0	0
CC2D2A	57545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	15552558	15552558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	CC2D2A-25	NM_001080522	exon19	c.A2293G	p.S765G	GAGTTTAGCAGTA	.	67	31	70	0	.	4	0	4	0	0
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55237637	55237637	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	IL6ST-290	NM_002184	exon17	c.A2030T	p.N677I	TTTGAATTAAAAT	.	135	55	170	0	.	0	0	0	0	0
ZNF474	133923	broad.mit.edu	37	5	121487938	121487938	+	Missense_Mutation	SNP	C	C	T	rs143759385	byfrequency;alternate_allele	TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ZNF474-90	NM_207317	exon2	c.C253T	p.P85S	AGCCCCCCTGTGA	.	48	3	75	1	C|1.000;G|0.000	0	0	0	0	0
BAG6	7917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31612378	31612378	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	BAG6-154	NM_004639	exon11	c.T1389A	p.D463E	GCCAGAATCTGGG	.	70	30	66	1	.	0	0	0	0	0
FHL5	9457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	97051597	97051597	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	FHL5-92	NM_020482	exon3	c.A108G	p.V36V	TCGTGTATTTTCT	.	73	28	85	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372499	5372499	+	Silent	SNP	C	C	T	rs113405524		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TNRC18-46	NM_001080495	exon19	c.G5901A	p.K1967K	GCGCCCCTTCTCC	.	25	9	0	0	C|0.989;T|0.011	5	4	1	0	0
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44796552	44796552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ZMIZ2-137	NM_174929	exon3	c.G172A	p.G58R	GTTTTGGGGAACC	.	97	43	63	0	.	7	7	0	0	0
AUTS2	26053	broad.mit.edu;bcgsc.ca	37	7	70229864	70229864	+	Silent	SNP	C	C	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	AUTS2-92	NM_001127231	exon8	c.C1341G	p.T447T	ACCCACCCTCCAG	.	224	121	97	1	.	0	0	0	0	0
PON2	5445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95040981	95040981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PON2-90	NM_000305	exon5	c.C478A	p.H160N	GCTCATGTTTGAC	.	98	47	99	0	.	81	52	28	0	1
SLC35B4	84912	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	133984905	133984905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SLC35B4-91	NM_032826	exon7	c.A596G	p.N199S	CTTACATTATAAA	.	120	56	69	1	.	2	1	1	0	0
PDP1	54704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94934633	94934633	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PDP1-229	NM_001161780	exon3	c.C421T	p.Q141X	AGCAATCAGCTGC	.	81	37	95	0	.	4	1	3	0	0
VPS13B	157680	broad.mit.edu	37	8	100729543	100729543	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	VPS13B-301	NM_017890	exon37	c.C6674G	p.P2225R	GGAATCCAGGCCC	.	141	7	139	0	.	0	0	0	0	0
ENPP2	5168	broad.mit.edu;bcgsc.ca	37	8	120580455	120580455	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ENPP2-292	NM_006209	exon23	c.C2247T	p.F749F	TACAAGGAATGCA	.	348	11	359	0	.	3	3	0	0	0
BRCC3	79184	broad.mit.edu;bcgsc.ca	37	X	154299904	154299904	+	Silent	SNP	A	A	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	BRCC3-706	NM_024332	exon1	c.A102C	p.V34V	GGAAGTAATGGGG	.	114	6	97	0	.	0	0	0	0	0
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	231931003	231931003	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	DISC1-91	NM_001164537	exon8	c.1746delA	p.I582fs	.	.	59	27	59	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	.	.	202	34	207	0	.	0	0	0	0	0
ZNF721	170960	hgsc.bcm.edu;bcgsc.ca	37	4	436799	436801	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ZNF721-47	NM_133474	exon3	c.1455_1457del	p.485_486del	.	.	80	23	81	0	.	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88537224	88537232	+	In_Frame_Del	DEL	ACAGCAGCA	ACAGCAGCA	-	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	ACAGCAGCA	ACAGCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	DSPP-90	NM_014208	exon5	c.3410_3418del	p.1137_1140del	.	.	250	114	190	0	.	0	0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139417461	139417462	+	Frame_Shift_Ins	INS	-	-	G	rs146350322	by1000genomes;alternate_allele	TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NOTCH1-5459	NM_017617	exon4	c.583_584insC	p.C195fs	TGTGGCAGGTGCC	.	145	4	34	0	.	0	0	0	0	0