Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CEP104	9731	ucsc.edu;bcgsc.ca	37	1	3747716	3747716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CEP104-92	NM_014704	exon13	c.C1730T	p.A577V	GAGTTTGCTTTCA	.	145	103	211	2	.	5	0	5	0	0
H6PD	9563	hgsc.bcm.edu	37	1	9324338	9324338	+	Missense_Mutation	SNP	G	G	A	rs200978401		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	H6PD-90	NM_004285	exon5	c.G1786A	p.V596M	AGCCCCGTGGCCC	.	6	4	1	0	G|0.999;A|0.001	3	0	3	0	0
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12835789	12835789	+	Nonsense_Mutation	SNP	C	C	T	rs201386508	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRAMEF12-25	NM_001080830	exon2	c.C391T	p.R131X	AAGAGACGAACAG	.	126	49	137	0	C|0.999;A|0.001	0	0	0	0	0
ARHGEF10L	55160	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17907127	17907127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARHGEF10L-292	NM_018125	exon2	c.G37T	p.G13X	GCCATAGGTACCG	.	90	31	90	1	.	1	0	1	0	0
MYCL1	4610	hgsc.bcm.edu	37	1	40366677	40366677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MYCL1-847	NM_005376	exon2	c.G520A	p.A174T	AGGGGGCGGCGGG	.	7	4	1	0	.	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	1	47905224	47905224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FOXD2-226	NM_004474	exon1	c.G1417A	p.G473R	CATCCCGGGGACG	.	34	21	11	0	.	0	0	0	0	0
IVL	3713	broad.mit.edu	37	1	152883242	152883242	+	Silent	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	IVL-93	NM_005547	exon2	c.T969G	p.P323P	GCAGCCTAAGCAT	.	180	10	95	1	.	0	0	0	0	0
PRDX6	9588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173454563	173454563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRDX6-186	NM_004905	exon3	c.A316G	p.R106G	GATGATAGGAATC	.	109	44	132	0	.	685	300	385	0	0
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232600607	232600607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SIPA1L2-95	NM_020808	exon7	c.G2799C	p.R933S	AATTTCCCTGATG	.	95	37	110	0	.	1	0	1	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	46999193	46999193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GPRIN2-90	NM_014696	exon3	c.G313A	p.D105N	GGCAGTGACCTGT	.	23	8	8	0	.	0	0	0	0	0
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118357347	118357347	+	Silent	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PNLIPRP1-154	NM_006229	exon7	c.T582C	p.D194D	GTTGGATCCTGTA	.	149	57	141	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1094686	1094686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MUC2-90	NM_002457	exon32	c.C5762T	p.T1921M	GTACCACGACCGG	.	165	64	80	0	.	0	0	0	0	0
ABTB2	25841	hgsc.bcm.edu	37	11	34378951	34378951	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABTB2-91	NM_145804	exon1	c.C180A	p.S60S	GTTCATGGAGCCG	.	62	22	13	0	.	1	0	1	0	0
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	48347236	48347236	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	OR4C3-69	NM_001004702	exon1	c.C744T	p.Y248Y	CCTGTACTCCTTG	.	280	46	267	0	.	0	0	0	0	0
RPS6KA4	8986	hgsc.bcm.edu	37	11	64136019	64136019	+	Missense_Mutation	SNP	G	G	A	rs199674030		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RPS6KA4-1036	NM_003942	exon11	c.G1280A	p.R427H	GTCGCCGCTGCCG	.	13	10	1	0	.	20	15	5	0	0
ALDH3B1	221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67789010	67789010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	.	.	.	.	ACACCTGTCACCC	.	158	9	86	0	.	27	25	2	0	0
FGF19	9965	broad.mit.edu	37	11	69514314	69514314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FGF19-658	NM_005117	exon3	c.G367A	p.E123K	CCTCCTCGAAAGC	.	110	5	106	0	.	0	0	0	0	0
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108384826	108384826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	EXPH5-95	NM_015065	exon6	c.G1408A	p.G470R	GTTCTCCGCTTCG	.	109	27	96	0	.	0	0	0	0	0
ABCG4	64137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119027153	119027153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABCG4-92	NM_022169	exon7	c.G801T	p.M267I	TGAGATGTTTGAC	.	231	131	199	0	.	0	0	0	0	0
GAPDH	2597	ucsc.edu	37	12	6645958	6645958	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GAPDH-226	NM_002046	exon4	c.236+2T>C	.	CAGGAGTGAGTGG	.	182	1	190	1	.	14	14	0	0	0
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18435382	18435382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PIK3C2G-1312	NM_004570	exon2	c.G367A	p.E123K	AATAAAGAATGCT	.	44	6	40	0	.	0	0	0	0	0
PKP2	5318	hgsc.bcm.edu;broad.mit.edu	37	12	33031889	33031889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PKP2-92	NM_004572	exon2	c.C301T	p.R101C	GGGAACGGCCTCC	.	72	4	70	0	.	0	0	0	0	0
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52700004	52700004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KRT86-91	NM_002284	exon7	c.A1187G	p.K396R	ACTCCAAGCTGGG	.	170	52	97	0	.	0	0	0	0	0
CYP27B1	1594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	58158227	58158227	+	Missense_Mutation	SNP	G	G	A	rs142446425	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CYP27B1-514	NM_000785	exon6	c.C1070T	p.A357V	GGGTAGGCACTGG	.	121	47	128	1	G|1.000;C|0.000	2	1	1	0	0
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	64491125	64491125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SRGAP1-653	NM_020762	exon15	c.G1783C	p.E595Q	CCTAAGGAAAGAT	.	54	18	49	0	.	0	0	0	0	0
CCER1	196477	hgsc.bcm.edu	37	12	91347593	91347593	+	Missense_Mutation	SNP	A	A	C	rs137989103		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_152638	exon1	c.T927G	p.D309E	CTCCTCATCTTCG	.	101	9	97	0	.	0	0	0	0	0
TBX5	6910	hgsc.bcm.edu	37	12	114841566	114841566	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TBX5-98	NM_000192	exon2	c.C138T	p.F46F	CTGGGTGAAGGCG	.	29	10	8	0	.	0	0	0	0	0
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122669246	122669246	+	Silent	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	LRRC43-135	NM_001098519	exon2	c.T331C	p.L111L	AGAGAATTGGCCA	.	213	92	181	0	.	7	2	5	0	0
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124335495	124335495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DNAH10-95	NM_207437	exon34	c.G5809A	p.G1937S	AACCCCGGCTACG	.	94	51	28	0	.	0	0	0	0	0
BRI3BP	140707	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125509696	125509696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	BRI3BP-91	NM_080626	exon3	c.G476T	p.W159L	TCTTCTGGATCGT	.	90	41	59	1	.	7	2	5	0	0
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	75923415	75923415	+	Silent	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TBC1D4-95	NM_014832	exon5	c.G1299T	p.L433L	CTGTTTCAGAGTC	.	48	25	72	0	.	3	1	2	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20846267	20846267	+	Silent	SNP	G	G	C	rs201698574	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TEP1-95	NM_007110	exon39	c.C5637G	p.A1879A	AGGGAAGGCAGCC	.	119	40	33	0	G|0.999;A|0.000	0	0	0	0	0
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	63447729	63447729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KCNH5-98	NM_172375	exon6	c.C803T	p.T268M	AAAGTCGTGTGAA	.	94	40	121	0	.	0	0	0	0	0
PPP1R36	145376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65053588	65053588	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_172365	exon9	c.G702A	p.K234K	CTGGAAGTTCTTT	.	51	11	71	0	.	0	0	0	0	0
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	32929467	32929467	+	Silent	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARHGAP11A-292	NM_014783	exon12	c.T2493C	p.L831L	ACCTCTTAAGTTT	.	117	52	125	0	.	4	3	1	0	0
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35275620	35275620	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF770-91	NM_014106	exon3	c.A16T	p.N6Y	TTAAATTGTTTTC	.	74	27	79	0	.	3	1	2	0	0
PRTG	283659	ucsc.edu	37	15	55931988	55931988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG-92	NM_173814	exon13	c.C2176G	p.H726D	GATGGTGGGGTGG	.	138	19	170	1	.	0	0	0	0	0
DNAH3	55567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21156633	21156633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DNAH3-167	NM_017539	exon3	c.C317T	p.P106L	TCACTGGGTCCAC	.	406	114	249	1	.	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27473632	27473632	+	Missense_Mutation	SNP	C	C	T	rs143019604		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GTF3C1-94	NM_001520	exon36	c.G6100A	p.V2034M	CCAGCACGGCGAC	.	81	23	24	0	C|1.000;T|0.000	31	19	12	0	0
ARMC5	79798	hgsc.bcm.edu	37	16	31473812	31473812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARMC5-24	NM_024742	exon3	c.G944A	p.R315Q	TGATTCGGCCTGC	.	73	34	11	0	.	3	1	2	0	0
TANGO6	79613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68941414	68941414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_024562	exon10	c.G1736T	p.G579V	ATCTCGGGGACTT	.	147	46	86	0	.	7	5	2	0	0
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71779166	71779166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	AP1G1-92	NM_001030007	exon20	c.A1889C	p.D630A	AATAAATCATTGG	.	112	74	78	0	.	1	1	0	0	0
MLKL	197259	bcgsc.ca	37	16	74716659	74716659	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MLKL-561	NM_152649	exon6	c.C846A	p.V282V	CTCCATGACAATG	.	155	92	117	4	.	11	7	4	0	0
PIEZO1	9780	hgsc.bcm.edu	37	16	88789709	88789709	+	Missense_Mutation	SNP	C	C	T	rs191656121		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_001142864	exon32	c.G4363A	p.A1455T	CCTGGGCGTTGGT	.	7	5	1	0	C|0.999;T|0.001	3	1	2	0	0
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1630298	1630298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	WDR81-91	NM_001163809	exon1	c.C2045T	p.S682F	GCTCCTCCAGTCA	.	45	31	87	0	.	1	0	1	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	C	rs28934573	bycluster;alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TP53-70225	NM_000546	exon7	c.C722G	p.S241C	ATGCAGGAACTGT	.	98	72	203	0	G|1.000;|0.000	17	2	15	0	0
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27958146	27958146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SSH2-92	NM_033389	exon15	c.A3985G	p.T1329A	CTGTTGTTGTGAG	.	133	33	72	0	.	6	1	5	0	0
NSRP1	84081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28512533	28512533	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	NSRP1-91	NM_032141	exon7	c.G1518T	p.G506G	GGAAGGGCAAGAG	.	170	95	125	0	.	28	9	19	0	0
CSHL1	1444	bcgsc.ca	37	17	61988556	61988556	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CSHL1-90	NM_022581	exon1	c.A1T	p.M1L	CAGCCATTGCCGC	.	699	382	415	4	.	0	0	0	0	0
SBNO2	22904	hgsc.bcm.edu	37	19	1132140	1132140	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_001100122	exon1	c.C57T	p.A19A	GGTCCCGGCGCTC	.	9	6	2	0	.	0	0	0	0	0
REXO1	57455	hgsc.bcm.edu	37	19	1827197	1827197	+	Missense_Mutation	SNP	C	C	T	rs78977406		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	REXO1-90	NM_020695	exon2	c.G1591A	p.A531T	GCCCTGCGGCCTC	.	10	6	0	0	C|0.995;T|0.005	3	2	1	0	0
YJEFN3	374887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19640278	19640278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	YJEFN3-90	NM_198537	exon2	c.G165T	p.Q55H	AAGGCAGTCATGG	.	172	39	188	0	.	1	1	0	0	0
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31769063	31769063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TSHZ3-232	NM_020856	exon2	c.G1636A	p.G546S	GATAGCCCCCCCA	.	171	83	135	0	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39019255	39019255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RYR1-100	NM_000540	exon75	c.A10954T	p.M3652L	TGTAACATGTTCC	.	219	76	129	0	.	0	0	0	0	0
MED25	81857	broad.mit.edu	37	19	50333366	50333366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MED25-91	NM_030973	exon7	c.G710C	p.G237A	CCCCAGGCCCCCT	.	43	6	28	1	.	10	10	0	0	0
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50918079	50918079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	POLD1-840	NM_002691	exon20	c.T2396A	p.F799Y	TCTACTTCCCATA	.	96	34	75	0	.	0	0	0	0	0
ZNF548	147694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57908473	57908473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF548-67	NM_001172773	exon3	c.C109T	p.L37F	GGGCACCTTGATG	.	321	126	331	0	.	0	0	0	0	0
AAK1	22848	hgsc.bcm.edu	37	2	69741762	69741762	+	Silent	SNP	T	T	C	rs77547121		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	AAK1-333	NM_014911	exon13	c.A1617G	p.Q539Q	TTGTTGTTGCTGC	.	39	11	73	0	C|1.000;|0.000	7	0	7	0	0
IL1A	3552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113540317	113540317	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	IL1A-522	NM_000575	exon3	c.C72A	p.S24S	ATCAATGGAGGAA	.	124	25	111	0	.	0	0	0	0	0
SLC35F5	80255	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	114487016	114487016	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SLC35F5-90	NM_025181	exon11	c.T1052G	p.V351G	CTATCTACTTTTC	.	131	85	123	2	.	18	7	11	0	0
POTEJ	653781	bcgsc.ca	37	2	131414161	131414161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	.	.	.	.	TTGCATGAAAATA	.	324	12	239	0	.	0	0	0	0	0
FAM168B	130074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131812937	131812937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FAM168B-90	NM_001009993	exon5	c.C383T	p.P128L	GTTGCAGGCATGC	.	241	154	196	1	.	26	8	18	0	0
CLK1	1195	broad.mit.edu;bcgsc.ca	37	2	201719790	201719790	+	Silent	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CLK1-784	NM_001162407	exon10	c.A1203C	p.P401P	ATCACATGGTTGG	.	327	12	250	0	.	44	44	0	0	0
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204304798	204304798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RAPH1-1151	NM_213589	exon14	c.G3115C	p.G1039R	GAACTCCAGGAAG	.	92	27	56	0	.	2	2	0	0	0
ZDBF2	57683	broad.mit.edu	37	2	207169686	207169686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZDBF2-3	NM_020923	exon5	c.A434G	p.Q145R	AGGGACAGCAGCA	.	91	3	76	0	.	0	0	0	0	0
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220072714	220072714	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZFAND2B-68	NM_138802	exon4	c.C388T	p.L130L	CATCCACTGGACC	.	156	107	250	0	.	34	3	31	0	0
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225422463	225422463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CUL3-229	NM_001257198	exon2	c.A195C	p.R65S	TGCATTTCTATAG	.	36	24	47	0	.	5	0	5	0	0
FRG1B	284802	broad.mit.edu	37	20	29624093	29624093	+	RNA	SNP	G	G	T	rs75468660		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FRG1B-22	.	.	.	.	TTCCAGGTGAGCT	.	146	10	130	1	G|0.500;T|0.500	0	0	0	0	0
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	36869309	36869309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIAA1755-95	NM_001029864	exon3	c.G1224T	p.E408D	CATATTCTCTGGG	.	53	23	70	0	.	0	0	0	0	0
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42199308	42199308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SGK2-990	NM_016276	exon6	c.T592C	p.F198L	GCCAGGTTCTACG	.	67	15	45	0	.	35	20	15	0	0
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42289163	42289163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SREBF2-154	NM_004599	exon12	c.C2251A	p.H751N	CCCGAGCACAGTG	.	78	41	72	0	.	21	10	11	0	0
CMTM7	112616	hgsc.bcm.edu	37	3	32433539	32433539	+	Silent	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CMTM7-226	NM_138410	exon1	c.G141C	p.L47L	GGCCCTGCTGAAA	.	4	4	0	0	.	0	0	0	0	0
FAIM	55179	ucsc.edu	37	3	138340383	138340383	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FAIM-227	NM_001033032	exon2	c.111+2T>A	.	GAAAGGTAGGAAG	.	4245	10	66	0	.	0	0	0	0	0
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55570036	55570036	+	Silent	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIT-20166	NM_000222	exon5	c.C903G	p.V301V	AAATGTCACAACA	.	164	58	162	0	.	0	0	0	0	0
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73148995	73148995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ADAMTS3-651	NM_014243	exon22	c.G3476A	p.S1159N	GCTGAACTGAGGT	.	157	51	138	0	.	8	5	3	0	0
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118451949	118451949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DMXL1-92	NM_005509	exon7	c.A661T	p.I221F	GGAGAAATTGACT	.	95	27	79	0	.	2	0	2	0	0
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141035313	141035313	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARAP3-291	NM_022481	exon31	c.C3985G	p.Q1329E	CTGGCTGCTGGTC	.	195	58	135	0	.	2	2	0	0	0
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178567002	178567002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ADAMTS2-228	NM_014244	exon11	c.C1664T	p.P555L	ATGTCAGGTGTCA	.	190	56	90	0	.	1	1	0	0	0
GCM2	9247	broad.mit.edu	37	6	10877442	10877442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GCM2-92	NM_004752	exon2	c.A274C	p.T92P	GCAGGGTGCAGGC	.	84	20	41	10	.	0	0	0	0	0
ABT1	29777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26597328	26597328	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABT1-91	NM_013375	exon1	c.A118T	p.K40X	GGCAGCAAGAAAC	.	184	72	170	1	.	0	0	0	0	0
ZNF451	26036	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	56966590	56966590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF451-93	NM_001257273	exon4	c.C1376T	p.A459V	GGCAGGCCTGGCT	.	73	37	122	0	.	0	0	0	0	0
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	129766960	129766960	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	LAMA2-162	NM_000426	exon45	c.C6423T	p.A2141A	ACAAGCCAATTCT	.	45	19	54	0	.	0	0	0	0	0
TAAR9	134860	broad.mit.edu	37	6	132859485	132859485	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	.	.	.	.	CGTGAACGAATCC	.	228	6	215	0	.	0	0	0	0	0
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139235873	139235873	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	REPS1-522	NM_031922	exon15	c.C1743A	p.A581A	AGGATGGGCAACA	.	74	33	108	0	.	24	16	8	0	0
MEOX2	4223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	15725867	15725867	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MEOX2-515	NM_005924	exon1	c.C161G	p.P54R	TCGTTGGGGTATC	.	161	43	91	0	.	0	0	0	0	0
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	18975517	18975517	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	HDAC9-227	NM_178425	exon22	c.C2889T	p.A963A	CACAGCCATCTGT	.	203	48	105	0	.	0	0	0	0	0
FAM221A	340277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23728992	23728992	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_199136	exon3	c.C344G	p.P115R	ATGTCCCCTTGAA	.	124	34	84	0	.	2	2	0	0	0
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31377935	31377935	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	NEUROD6-92	NM_022728	exon2	c.C948T	p.Y316Y	TAAGTCGTAAGGG	.	107	53	72	0	.	0	0	0	0	0
ZNF727	442319	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63537709	63537709	+	Silent	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_001159522	exon4	c.A282T	p.S94S	CGATTCATTTCAA	.	91	21	52	1	.	0	0	0	0	0
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92764048	92764048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SAMD9L-94	NM_152703	exon5	c.T1237A	p.Y413N	CATAGTATGAATT	.	25	7	17	0	.	10	7	3	0	0
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	92953019	92953019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CCDC132-90	NM_017667	exon21	c.A1952T	p.Y651F	CAATATATACCTT	.	36	7	28	0	.	8	6	2	0	0
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100676808	100676808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MUC17-95	NM_001040105	exon3	c.A2111G	p.E704G	GTTCTGAGGCTAG	.	234	54	140	0	.	0	0	0	0	0
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu	37	7	142606703	142606703	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TRPV5-177	NM_019841	exon14	c.C1848T	p.S616S	GATCCCGGAGCGA	.	112	6	52	0	.	0	0	0	0	0
DCAF13	25879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104432588	104432588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DCAF13-135	NM_015420	exon2	c.A623C	p.K208T	TTGCAAAACCATT	.	146	56	178	2	.	25	9	16	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139707076	139707076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	COL22A1-103	NM_152888	exon33	c.G2639A	p.G880E	GGTTCCCCAGGCA	.	90	38	108	0	.	0	0	0	0	0
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144397926	144397926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TOP1MT-91	NM_052963	exon12	c.C1524G	p.H508Q	GGCTTTGTGCTCA	.	75	35	54	0	.	21	10	11	0	0
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	138649177	138649177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KCNT1-137	NM_020822	exon9	c.C709G	p.P237A	TTCATCCCCGTCT	.	55	18	34	0	.	0	0	0	0	0
MED14	9282	broad.mit.edu	37	X	40586008	40586008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MED14-289	NM_004229	exon3	c.A338G	p.E113G	CATTTTTCCACTT	.	72	3	92	0	.	0	0	0	0	0
CXorf64	100130613	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	125955414	125955414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_001122716	exon2	c.T793A	p.F265I	CTTCCTTTTGCTC	.	62	50	59	1	.	0	0	0	0	0
C1orf51	148523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150256865	150256882	+	In_Frame_Del	DEL	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	C1orf51-90	NM_144697	exon3	c.472_489del	p.158_163del	.	.	171	27	262	0	.	0	0	0	0	0
PRUNE	58497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151001408	151001408	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRUNE-91	NM_021222	exon7	c.921delA	p.A307fs	.	.	114	43	143	0	.	0	0	0	0	0
JMJD1C	221037	broad.mit.edu	37	10	64973409	64973409	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	JMJD1C-275	NM_032776	exon8	c.2518delC	p.Q840fs	GTGACTGGTGCTG	.	321	7	292	0	.	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1271547	1271547	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_002458	exon31	c.13437delA	p.P4479fs	CACCCCACATGTG	.	804	7	391	0	.	0	0	0	0	0
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18159591	18159591	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MRGPRX3-92	NM_054031	exon3	c.842delG	p.R281fs	.	.	65	26	82	0	.	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101350131	101350136	+	In_Frame_Del	DEL	TCGTTG	TCGTTG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TCGTTG	TCGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1-46	NM_001134888	exon1	c.990_995del	p.330_332del	.	.	46	14	51	0	.	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu	37	14	101350131	101350138	+	Frame_Shift_Del	DEL	TCGTTGAG	TCGTTGAG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TCGTTGAG	TCGTTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1-46	NM_001134888	exon1	c.988_995del	p.330_332del	.	.	49	14	50	0	.	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101350138	101350138	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1-46	NM_001134888	exon1	c.988delC	p.L330fs	.	.	45	14	48	0	.	0	0	0	0	0
SAMD14	201191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48191564	48191565	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SAMD14-68	NM_174920	exon9	c.1012_1013del	p.338_338del	.	.	219	58	147	0	.	0	0	0	0	0
TPM4	7171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16199862	16199862	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TPM4-316	NM_001145160	exon6	c.571delG	p.G191fs	.	.	80	32	101	0	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;bcgsc.ca	37	2	241658528	241658528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIF1A-91	NM_001244008	exon47	c.5109delC	p.P1703fs	.	.	289	95	79	0	.	0	0	0	0	0
GALC	2581	hgsc.bcm.edu;broad.mit.edu	37	14	88454869	88454870	+	Splice_Site	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GALC-90	NM_001201402	exon3	c.118-2->T	.	.	.	39	18	62	0	.	0	0	0	0	0
RIN3	79890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	93117951	93117952	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RIN3-522	NM_024832	exon6	c.557_558insT	p.P186fs	.	.	39	24	47	0	.	0	0	0	0	0
PRTG	283659	broad.mit.edu;bcgsc.ca	37	15	55931987	55931988	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG-92	NM_173814	exon13	c.2177_2178insG	p.H726fs	AGATGGTGGGGTG	.	138	18	170	0	.	0	0	0	0	0
PRTG	283659	broad.mit.edu;bcgsc.ca	37	15	55931988	55931989	+	In_Frame_Ins	INS	-	-	GGTGGT	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG-92	NM_173814	exon13	c.2176_2177insACCACC	p.H726delinsTTH	GATGGTGGGGTGG	.	138	18	170	0	.	0	0	0	0	0
PRTG	283659	hgsc.bcm.edu	37	15	55931991	55931992	+	Frame_Shift_Ins	INS	-	-	TGGTGGG	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG-92	NM_173814	exon13	c.2173_2174insCCCACCA	p.P725fs	.	.	132	20	168	0	.	0	0	0	0	0
PCDH12	51294	hgsc.bcm.edu;bcgsc.ca	37	5	141334867	141334868	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PCDH12-93	NM_016580	exon1	c.2550_2551insT	p.F850fs	.	.	158	47	68	0	.	0	0	0	0	0
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	55925556	55925557	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	COL21A1-24	NM_030820	exon27	c.2390_2391insT	p.C797fs	.	.	47	14	69	0	.	0	0	0	0	0
ANKRD18A	253650	hgsc.bcm.edu;bcgsc.ca	37	9	38593854	38593855	+	Frame_Shift_Ins	INS	-	-	AAAA	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ANKRD18A-92	NM_147195	exon10	c.1907_1908insTTTT	p.S636fs	.	.	150	28	180	0	.	0	0	0	0	0
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1241762	1241763	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SNTG2-136	NM_018968	exon10	c.A823T	p.N275Y	TCAGCCAACATCA	.	47.0	31.0	33.0	0.0	.	0	0	0	0	0
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9525075	9525076	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PAK7-1434	NM_177990	exon8	c.G1809A	p.V604F	GCCAACCAATGAT	.	98	31	141	1	.	0	0	0	0	0