Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PLCH2	9651	broad.mit.edu	37	1	2426375	2426375	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PLCH2-229	NM_014638	exon12	c.C1740T	p.F580F	AAGCTTCTCCAGG	.	22	3	22	0	.	0	0	0	0	0
NPHP4	261734	broad.mit.edu	37	1	5927943	5927943	+	Missense_Mutation	SNP	G	G	C	rs139767853	alternate_allele	TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NPHP4-515	NM_015102	exon24	c.C3329G	p.A1110G	CCACTCGCTCGGA	.	178	19	134	8	G|0.998;A|0.002	6	6	0	0	0
H6PD	9563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9324818	9324818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	H6PD-90	NM_004285	exon5	c.A2266G	p.T756A	ATCACCACGCTGG	.	259	61	183	0	.	6	5	1	0	0
DHRS3	9249	broad.mit.edu;ucsc.edu	37	1	12628411	12628411	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DHRS3-91	NM_004753	exon6	c.A867G	p.S289S	GGTTCCTGAGAAT	.	196	5	183	0	.	180	157	23	0	0
C1orf228	339541	broad.mit.edu	37	1	45189860	45189860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_001145636	exon7	c.C791T	p.A264V	TCGTGGCGCTGCT	.	249	8	164	1	.	0	0	0	0	0
SCP2	6342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53416459	53416459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCP2-153	NM_002979	exon4	c.C232T	p.H78Y	ATCTATCACAGTT	.	118	25	110	0	.	13	9	4	0	0
PODN	127435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53535630	53535630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PODN-92	NM_153703	exon2	c.G247T	p.G83C	AGTGGCGGCCACA	.	50	23	28	0	.	0	0	0	0	0
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78395127	78395127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NEXN-92	NM_144573	exon9	c.G991C	p.E331Q	GCAGAAGAAGAAG	.	98	28	93	0	.	0	0	0	0	0
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110734657	110734657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC6A17-92	NM_001010898	exon7	c.G928A	p.G310S	GCCTTGGGCCTGG	.	200	46	142	0	.	0	0	0	0	0
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110921516	110921516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC16A4-93	NM_004696	exon6	c.G989T	p.G330V	TCAATCCCCAGTG	.	157	47	163	0	.	65	37	28	0	0
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151261140	151261140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF687-92	NM_020832	exon3	c.T2252G	p.L751R	CCCATCTCCGGGA	.	146	36	130	0	.	9	6	3	0	0
ADAR	103	broad.mit.edu	37	1	154574370	154574370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ADAR-157	NM_001111	exon2	c.G748T	p.A250S	CCTGAGCTGAGAC	.	244	6	203	0	.	12	12	0	0	0
DCST1	149095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155015935	155015935	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DCST1-92	NM_152494	exon10	c.G1122T	p.L374L	GGCCCTGGGGCTG	.	70	21	64	0	.	0	0	0	0	0
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167825476	167825476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ADCY10-493	NM_018417	exon17	c.G2098A	p.V700I	GCTGTACTGCACC	.	284	89	240	0	.	0	0	0	0	0
KCNT2	343450	broad.mit.edu;bcgsc.ca	37	1	196227503	196227503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNT2-159	NM_198503	exon26	c.G3032A	p.R1011Q	TTTCTCCGCAGCA	.	165	8	168	0	.	0	0	0	0	0
ASPM	259266	ucsc.edu;bcgsc.ca	37	1	197069639	197069639	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ASPM-615	NM_018136	exon18	c.C8742T	p.I2914I	AATAATGATAACA	.	42	4	38	0	.	0	0	0	0	0
CHI3L1	1116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203151959	203151959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CHI3L1-515	NM_001276	exon6	c.A487G	p.K163E	CTTCCTTTATAAA	.	108	29	82	0	.	34	33	1	0	0
CENPF	1063	broad.mit.edu	37	1	214820384	214820384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CENPF-567	NM_016343	exon13	c.G7471A	p.E2491K	CTTGATGAGGCCA	.	103	5	108	0	.	1	1	0	0	0
ANK3	288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61829526	61829526	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ANK3-107	NM_020987	exon37	c.T11113G	p.S3705A	CTGCTGATTTCTC	.	136	28	136	1	.	0	0	0	0	0
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74884990	74884990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUDT13-90	NM_015901	exon6	c.T580G	p.Y194D	ATAATCTATTATC	.	101	25	115	0	.	0	0	0	0	0
MAT1A	4143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	82039973	82039973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MAT1A-90	NM_000429	exon5	c.C505A	p.R169S	CGGAGCGCCTGAG	.	86	7	76	0	.	0	0	0	0	0
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	83635455	83635455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NRG3-522	NM_001165972	exon1	c.C359G	p.S120C	CCAGCTCTTTCCC	.	113	29	95	0	.	0	0	0	0	0
LRIT2	340745	ucsc.edu;bcgsc.ca	37	10	85984556	85984556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRIT2-92	NM_001017924	exon2	c.T425A	p.L142H	TCAGGGAGTGCAT	.	195	54	183	2	.	0	0	0	0	0
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88681453	88681453	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BMPR1A-1619	NM_004329	exon11	c.1342+1G>A	.	CAGGAGGTGGGAG	.	155	44	163	0	.	9	0	9	0	0
PIPSL	266971	ucsc.edu	37	10	95719222	95719222	+	RNA	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	.	.	.	.	ATTCAACGTGTTT	.	412	5	346	2	.	124	68	56	0	0
CDHR5	53841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	621148	621148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CDHR5-90	NM_031264	exon7	c.A721G	p.T241A	AGAAGGTGCAGGG	.	154	34	112	0	.	126	87	37	0	2
MUC2	4583	broad.mit.edu	37	11	1093271	1093271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MUC2-90	NM_002457	exon30	c.C5090G	p.T1697R	CCCCAACATCGAC	.	70	4	54	0	.	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1268538	1268538	+	Silent	SNP	G	G	A	rs74447707		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_002458	exon31	c.G10428A	p.S3476S	CACCTCGGGCATC	.	243	7	181	1	.	0	0	0	0	0
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5510196	5510196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	OR52D1-68	NM_001005163	exon1	c.T260C	p.I87T	TGGCCATTTTGTG	.	419	115	413	1	.	0	0	0	0	0
SUV420H1	51111	broad.mit.edu	37	11	67925405	67925405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SUV420H1-228	NM_017635	exon11	c.G2408T	p.S803I	GGATCACTGCAGC	.	123	4	138	0	.	3	3	0	0	0
PRSS23	11098	broad.mit.edu	37	11	86519059	86519059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PRSS23-515	NM_007173	exon2	c.G374A	p.R125Q	AGTCTCGAAGGAA	.	180	5	157	0	.	5	5	0	0	0
SIK3	23387	broad.mit.edu	37	11	116729111	116729111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SIK3-919	NM_025164	exon20	c.C2752T	p.R918W	AATGCCGGGGAGA	.	385	6	281	1	.	12	12	0	0	0
SIK3	23387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	116741113	116741113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SIK3-919	NM_025164	exon14	c.T1568C	p.V523A	GCTGGCACTGCCT	.	114	25	88	0	.	0	0	0	0	0
ATF7IP	55729	broad.mit.edu;bcgsc.ca	37	12	14577475	14577475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ATF7IP-252	NM_018179	exon2	c.C626G	p.P209R	GTGATCCCATCCC	.	411	14	360	0	.	6	6	0	0	0
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40713882	40713882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRK2-533	NM_198578	exon34	c.A4920T	p.K1640N	AAGGAAATTTCCA	.	54	13	52	0	.	0	0	0	0	0
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40745358	40745358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRK2-533	NM_198578	exon44	c.T6399A	p.N2133K	TTTGAATTCAGCT	.	56	6	74	0	.	24	18	6	0	0
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53225246	53225246	+	Silent	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KRT79-72	NM_175834	exon2	c.G642T	p.G214G	CAGCCTCCCCCGC	.	111	27	101	0	.	0	0	0	0	0
GPR182	11318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57389791	57389791	+	Silent	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR182-500	NM_007264	exon2	c.C798G	p.V266V	GGCCGTCTTTGTC	.	67	18	46	0	.	0	0	0	0	0
KIF5A	3798	broad.mit.edu	37	12	57965901	57965901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KIF5A-517	NM_004984	exon14	c.C1420T	p.Q474X	CACCTGCAATCAG	.	112	5	101	0	.	0	0	0	0	0
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21163994	21163994	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	IFT88-91	NM_175605	exon6	c.T225C	p.A75A	TATAGCTACTGGA	.	56	6	61	0	.	0	0	0	0	0
USP12	219333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	27664060	27664060	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP12-522	NM_182488	exon6	c.T694A	p.Y232N	CACAGTAATACTT	.	115	39	110	0	.	2	1	1	0	0
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	60686191	60686191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DIAPH3-516	NM_001042517	exon3	c.A343G	p.K115E	GTGGCTTTGGAAA	.	88	21	136	0	.	0	0	0	0	0
AJUBA	84962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23444254	23444254	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_032876	exon5	c.C1299T	p.N433N	GCACTTGTTGCAA	.	75	23	58	0	.	7	2	5	0	0
SAV1	60485	broad.mit.edu	37	14	51132275	51132275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SAV1-658	NM_021818	exon2	c.C157T	p.P53S	AATCTGGAAGACA	.	164	4	171	0	.	6	6	0	0	0
NRDE2	55051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90769186	90769186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_017970	exon6	c.G1289A	p.S430N	AAGGTACTAAACT	.	97	16	87	0	.	3	2	1	0	0
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39886356	39886356	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	THBS1-653	NM_003246	exon20	c.C3324A	p.Y1108X	CGCCTACAGATGG	.	194	47	192	0	.	2	2	0	0	0
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72190908	72190908	+	Silent	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYO9A-93	NM_006901	exon25	c.T3936C	p.P1312P	GCCTTCAGGCACC	.	120	41	133	0	.	0	0	0	0	0
NUBP2	10101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1837701	1837701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUBP2-90	NM_012225	exon4	c.G358T	p.D120Y	GTGTCCGACGTGG	.	105	33	42	0	.	80	47	32	0	1
OR1F1	4992	broad.mit.edu	37	16	3254884	3254884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	OR1F1-68	NM_012360	exon1	c.G638T	p.C213F	TTCTTTGCATCCT	.	321	8	202	0	.	1	1	0	0	0
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4557884	4557884	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HMOX2-90	NM_001127205	exon4	c.G375T	p.V125V	GCAGGTGCAGTGC	.	254	39	126	0	.	112	89	23	0	0
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RRN3-91	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG	.	168	5	79	0	G|0.997;A|0.003	15	15	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RRN3-91	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	153	5	74	0	G|0.997;A|0.003	13	13	0	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18861438	18861438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMG1-1160	NM_015092	exon35	c.A5294G	p.D1765G	TCCTCATCTAAAG	.	298	99	218	0	.	0	0	0	0	0
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20559488	20559488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ACSM2B-94	NM_182617	exon9	c.C994T	p.Q332X	AGTTCTGTAGATG	.	146	39	109	0	.	196	181	14	1	0
SLC7A6OS	84138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68338097	68338097	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC7A6OS-91	NM_032178	exon3	c.G510C	p.E170D	GATCAACTCTACA	.	300	101	208	1	.	7	4	3	0	0
KLHDC4	54758	broad.mit.edu	37	16	87764193	87764193	+	Silent	SNP	T	T	C	rs191241806		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KLHDC4-182	NM_017566	exon6	c.A564G	p.Q188Q	GATCAATTGTCTC	.	159	3	95	0	T|0.999;C|0.000	29	29	0	0	0
BANP	54971	hgsc.bcm.edu	37	16	88105728	88105728	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BANP-226	NM_001173543	exon13	c.G1398A	p.A466A	GGCGGCGGGCGTG	.	7	6	1	0	.	7	5	2	0	0
SMCR8	140775	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18226353	18226353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMCR8-91	NM_144775	exon2	c.A2783T	p.D928V	GGTTTGACTATGT	.	200	43	178	0	.	2	1	1	0	0
MIEN1	84299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37886504	37886504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_032339	exon2	c.A130G	p.S44G	CAGCACTGGCCAG	.	64	18	59	0	.	61	39	21	0	1
AKAP1	8165	broad.mit.edu	37	17	55183277	55183277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	AKAP1-227	NM_001242902	exon3	c.C452T	p.S151F	TTTCATCCCCAAA	.	135	3	135	0	.	8	8	0	0	0
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2703754	2703754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMCHD1-46	NM_015295	exon13	c.A1712C	p.D571A	AGTATGATAAACA	.	123	28	152	0	.	0	0	0	0	0
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	39542509	39542509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PIK3C3-1312	NM_002647	exon3	c.C313A	p.Q105K	AATGCCCAAGTGG	.	139	7	129	0	.	3	3	0	0	0
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8642191	8642191	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYO1F-93	NM_012335	exon1	c.G3C	p.M1I	ACTTACCATGGTG	.	80	24	70	0	.	0	0	0	0	0
GAPDHS	26330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36029207	36029207	+	Splice_Site	SNP	A	A	C	rs111871741	alternate_allele	TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GAPDHS-226	NM_014364	exon3	c.246-2A>C	.	CTGGCCAGATTTG	.	147	34	129	0	.	0	0	0	0	0
WDR87	83889	hgsc.bcm.edu	37	19	38377329	38377329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_031951	exon6	c.A6865G	p.K2289E	TCTTCTTCTTCTT	.	88	20	78	0	.	0	0	0	0	0
LRRC4B	94030	bcgsc.ca	37	19	51022541	51022541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRC4B-205	NM_001080457	exon3	c.C429A	p.D143E	CCGGTTGTCAAAA	.	123	6	78	0	.	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21227463	21227463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	APOB-175	NM_000384	exon27	c.A11873G	p.Y3958C	TCTTCATATTCTG	.	159	39	138	0	.	0	0	0	0	0
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29295663	29295663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	C2orf71-91	NM_001029883	exon1	c.C1465T	p.P489S	CCTCTGGGCTGCT	.	254	80	208	0	.	0	0	0	0	0
AMER3	205147	broad.mit.edu	37	2	131521382	131521382	+	Silent	SNP	C	C	A	rs200984217		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_152698	exon2	c.C1737A	p.A579A	GCTCGCCGGAGAG	.	56	8	59	0	C|0.999;A|0.001	0	0	0	0	0
ANKRD30BL	554226	broad.mit.edu	37	2	132919099	132919099	+	RNA	SNP	C	C	T	rs199974298		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	.	.	.	.	TGTCGTCTTCTTC	.	112	12	88	1	C|0.991;T|0.009	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	.	.	.	.	AGAGTCGTTGTTG	.	305	20	217	3	.	0	0	0	0	0
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160206728	160206728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BAZ2B-94	NM_013450	exon28	c.G4354A	p.E1452K	CTTTTTCTTTAAG	.	70	15	73	1	.	1	1	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170012842	170012842	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRP2-175	NM_004525	exon65	c.C12093A	p.V4031V	AGCACAGACACAC	.	174	40	191	0	.	80	38	42	0	0
USP37	57695	broad.mit.edu;bcgsc.ca	37	2	219330816	219330816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP37-661	NM_020935	exon21	c.G2383A	p.D795N	GCCAATCAACTTC	.	95	6	144	0	.	0	0	0	0	0
TMEM74B	55321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1161648	1161648	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_018354	exon2	c.C615T	p.Y205Y	CCGGCGGTACAGC	.	86	18	78	0	.	0	0	0	0	0
SRC	6714	broad.mit.edu	37	20	36026154	36026154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SRC-2731	NM_005417	exon9	c.G756T	p.K252N	GTCCAAGCCGCAG	.	56	4	69	0	.	15	15	0	0	0
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42310472	42310472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYBL2-415	NM_002466	exon3	c.A163G	p.K55E	GACTGGAAGTTCC	.	144	41	95	0	.	1	1	0	0	0
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40800334	40800334	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SGSM3-494	NM_015705	exon5	c.C241T	p.L81L	GCCCACCTGGAGT	.	90	24	83	0	.	3	0	3	0	0
SGSM3	27352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40802147	40802147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SGSM3-494	NM_015705	exon9	c.C880T	p.L294F	AAGCTGCTCCTGC	.	234	9	158	0	.	17	13	4	0	0
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	4878618	4878618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ITPR1-710	NM_001168272	exon60	c.A8144C	p.Q2715P	AGGATCAGGTAAA	.	59	13	39	0	.	0	0	0	0	0
NUP210	23225	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13399893	13399893	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUP210-256	NM_024923	exon16	c.C2157T	p.V719V	GGCGATGACCTGG	.	206	25	162	0	.	0	0	0	0	0
SH3BP5	9467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15298471	15298471	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SH3BP5-90	NM_004844	exon8	c.C1039T	p.L347L	GATCCAGGCTGCC	.	221	46	150	0	.	26	26	0	0	0
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15765925	15765925	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ANKRD28-135	NM_015199	exon7	c.C657T	p.I219I	TACGCTGATCATT	.	134	18	91	0	.	3	2	1	0	0
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38316203	38316203	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC22A13-91	NM_004256	exon3	c.T591C	p.A197A	CTTTGCTGTGGCT	.	189	71	115	0	.	2	0	2	0	0
SCN10A	6336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38755540	38755540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCN10A-99	NM_006514	exon21	c.T3713G	p.L1238R	TATTCCAGAATCT	.	80	27	48	1	.	0	0	0	0	0
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42577629	42577629	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	VIPR1-91	NM_004624	exon13	c.C1230T	p.G410G	GCAGGGCGTCCTG	.	121	51	65	0	.	2	2	0	0	0
FLNB	2317	broad.mit.edu;bcgsc.ca	37	3	58154281	58154281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	FLNB-593	NM_001164317	exon45	c.A7406G	p.Y2469C	AAGGGTACAAAGT	.	208	7	126	0	.	61	57	4	0	0
ROPN1	54763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123695737	123695737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ROPN1-92	NM_017578	exon4	c.G208C	p.E70Q	ACAGCTCAGGTGT	.	235	40	187	0	.	0	0	0	0	0
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154855893	154855893	+	Silent	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MME-516	NM_007287	exon9	c.T723A	p.A241A	GCAGGCTTGTACA	.	161	70	128	0	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195510995	195510995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MUC4-90	NM_018406	exon2	c.G7456A	p.A2486T	ACGAAGCGTCGGT	.	1110	35	789	10	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195515374	195515374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MUC4-90	NM_018406	exon2	c.C3077A	p.P1026H	GTGACAGGAAGAG	.	407	15	257	2	.	0	0	0	0	0
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	22436990	22436990	+	Missense_Mutation	SNP	C	C	G	rs146147575		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR125-91	NM_145290	exon10	c.G1387C	p.V463L	CTGCCACAAATAT	.	203	47	148	0	C|1.000;G|0.000	1	0	1	0	0
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	38988027	38988027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TMEM156-91	NM_024943	exon5	c.A752T	p.K251I	GTAGGTTTGTCTC	.	53	10	71	0	.	0	0	0	0	0
CLOCK	9575	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56301748	56301748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CLOCK-515	NM_004898	exon23	c.T2375C	p.L792P	CCATGGAGCAACC	.	193	53	192	2	.	2	0	2	0	0
TBC1D9	23158	broad.mit.edu;bcgsc.ca	37	4	141590874	141590874	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TBC1D9-23	NM_015130	exon8	c.C1351T	p.L451L	CATTTAGGTTAAA	.	243	9	205	0	.	2	2	0	0	0
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153691183	153691183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TIGD4-91	NM_145720	exon2	c.G974A	p.S325N	TTAAGGCTTTTAA	.	140	32	130	0	.	0	0	0	0	0
FASTKD3	79072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7867846	7867846	+	Silent	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	FASTKD3-156	NM_024091	exon2	c.T351C	p.S117S	TATAAAACTTAGC	.	126	55	116	1	.	1	1	0	0	0
CDH9	1007	broad.mit.edu	37	5	26988231	26988231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CDH9-99	NM_016279	exon2	c.C210A	p.D70E	TTGTGTGTCAGTA	.	102	5	81	0	.	0	0	0	0	0
GPR98	84059	broad.mit.edu	37	5	89971181	89971181	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR98-103	NM_032119	exon24	c.C5232T	p.I1744I	GGTCATCCGTGCA	.	350	6	254	0	.	0	0	0	0	0
GIN1	54826	broad.mit.edu	37	5	102432357	102432357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GIN1-92	NM_017676	exon7	c.C1182G	p.D394E	AATATAGTCTATG	.	162	4	112	0	.	2	2	0	0	0
WNT8A	7478	broad.mit.edu	37	5	137426733	137426733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	WNT8A-524	NM_058244	exon6	c.G1027T	p.A343S	GGCAGTGCCCAGT	.	105	9	58	0	.	0	0	0	0	0
NMUR2	56923	broad.mit.edu;bcgsc.ca	37	5	151784506	151784506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NMUR2-526	NM_020167	exon1	c.G169T	p.V57L	CCACCACAAAAAT	.	238	9	176	0	.	0	0	0	0	0
HUS1B	135458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	656335	656335	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HUS1B-227	NM_148959	exon1	c.T610A	p.F204I	TTTTAAAATAACT	.	103	27	101	0	.	0	0	0	0	0
SERPINB6	5269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	2948772	2948772	+	Silent	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SERPINB6-226	NM_001271823	exon7	c.G948T	p.L316L	CTTGCCCAGCTCG	.	201	48	158	1	.	73	52	21	0	0
VWA7	80737	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31735431	31735431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_025258	exon11	c.A1604G	p.D535G	CTGATGTCTCCGT	.	133	40	130	1	.	10	6	4	0	0
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49586991	49586991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RHAG-154	NM_000324	exon2	c.G242A	p.G81D	TTGATACCCACAC	.	130	30	98	0	.	0	0	0	0	0
CD164	8763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	109690201	109690201	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CD164-90	NM_006016	exon6	c.G447A	p.V149V	TGGAGTCACAGTG	.	177	39	194	0	.	136	78	58	0	0
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158330822	158330822	+	Silent	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SNX9-226	NM_016224	exon8	c.T831G	p.T277T	ACCTACTGTAAGT	.	104	26	85	0	.	0	0	0	0	0
MICALL2	79778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1478499	1478499	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MICALL2-90	NM_182924	exon10	c.A2099C	p.K700T	TGAGGTTTCTTCT	.	43	13	33	0	.	3	2	1	0	0
HIBADH	11112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27582616	27582616	+	Silent	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HIBADH-92	NM_152740	exon5	c.G588C	p.V196V	GTACACCACGTTG	.	142	34	118	0	.	122	58	64	0	0
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100344177	100344177	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZAN-142	.	.	.	.	CATGCTCCTGGAC	.	113	30	101	0	.	0	0	0	0	0
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	113519562	113519562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PPP1R3A-832	NM_002711	exon4	c.A1585G	p.K529E	TTTGTTTTTCATT	.	90	11	96	0	.	0	0	0	0	0
CTTNBP2	83992	bcgsc.ca	37	7	117375372	117375372	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CTTNBP2-94	NM_033427	exon15	c.G3639A	p.L1213L	AGGTGCCAAAAAG	.	39	4	44	0	.	0	0	0	0	0
PAXIP1	22976	broad.mit.edu	37	7	154754041	154754041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PAXIP1-228	NM_007349	exon10	c.G2117A	p.C706Y	TGTGAACATGGCT	.	188	5	158	0	.	0	0	0	0	0
PTPRN2	5799	broad.mit.edu;bcgsc.ca	37	7	157369349	157369349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PTPRN2-295	NM_002847	exon19	c.C2739G	p.D913E	TCCTCGGTCATAC	.	92	7	95	1	.	0	0	0	0	0
MTMR9	66036	broad.mit.edu	37	8	11180146	11180146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MTMR9-226	NM_015458	exon10	c.G1499A	p.R500H	TCCTACGTTGGAA	.	165	4	183	1	.	0	0	0	0	0
DEFB136	613210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11831570	11831570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DEFB136-90	NM_001033018	exon2	c.C113T	p.A38V	CATACGGCTTTCT	.	182	50	172	0	.	0	0	0	0	0
SCARA3	51435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	27516084	27516084	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCARA3-228	NM_182826	exon5	c.C397T	p.Q133X	AAACTGCAGGAGG	.	93	7	78	0	.	9	9	0	0	0
KCNU1	157855	broad.mit.edu	37	8	36703123	36703123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNU1-23	NM_001031836	exon17	c.C1729A	p.Q577K	CCTCCACAAGTGA	.	104	3	82	1	.	0	0	0	0	0
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	76463728	76463728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HNF4G-187	NM_004133	exon4	c.A458G	p.Q153R	CTCGCCAGGTACC	.	67	10	65	0	.	0	0	0	0	0
CA1	759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	86250502	86250502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CA1-91	NM_001164830	exon2	c.G214A	p.E72K	TGTCCTCAAAATT	.	100	8	120	0	.	0	0	0	0	0
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101076121	101076121	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RGS22-140	NM_015668	exon8	c.G875C	p.R292T	TATACTCTCAGAA	.	62	7	64	0	.	0	0	0	0	0
ZNF572	137209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	125988719	125988719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF572-154	NM_152412	exon3	c.A209C	p.E70A	CAAAAGAAATGCC	.	54	13	68	0	.	0	0	0	0	0
ZNF251	90987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145947050	145947050	+	Silent	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF251-68	NM_138367	exon5	c.T1995A	p.I665I	TTGGAAAATCTTC	.	90	28	96	0	.	1	1	0	0	0
TLN1	7094	broad.mit.edu	37	9	35704480	35704480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TLN1-609	NM_006289	exon45	c.G5896A	p.A1966T	GCGCAGCCAGGAC	.	145	5	120	1	.	112	103	9	0	0
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104125253	104125253	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BAAT-228	NM_001127610	exon4	c.A714G	p.V238V	AATCTGTACTCCT	.	59	16	62	0	.	0	0	0	0	0
GPR107	57720	broad.mit.edu;bcgsc.ca	37	9	132845879	132845879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR107-91	NM_001136557	exon6	c.A562G	p.K188E	GATTCAAAGGTAA	.	223	11	243	0	.	0	0	0	0	0
RAB41	347517	bcgsc.ca	37	X	69502407	69502407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RAB41-229	NM_001032726	exon2	c.G146T	p.R49L	TCAGCCGCTTCAT	.	186	94	196	3	.	0	0	0	0	0
IRS4	8471	ucsc.edu	37	X	107977151	107977151	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	IRS4-623	NM_003604	exon1	c.C2424T	p.Y808Y	AGAGAAGTAGGAG	.	33	4	48	0	.	0	0	0	0	0
WLS	79971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	68697907	68697910	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TTTG	TTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	WLS-90	NM_001002292	exon1	c.73_76del	p.25_26del	.	.	131	34	135	0	.	0	0	0	0	0
MKI67	4288	broad.mit.edu	37	10	129902204	129902205	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MKI67-519	NM_002417	exon13	c.7899_7900del	p.2633_2634del	GTTCTTTGTGTGT	.	183	7	121	0	.	0	0	0	0	0
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108381937	108381941	+	Frame_Shift_Del	DEL	CTTCT	CTTCT	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTTCT	CTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	EXPH5-95	NM_015065	exon6	c.4293_4297del	p.1431_1433del	.	.	123	26	146	0	.	0	0	0	0	0
USP5	8078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6974373	6974374	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP5-659	NM_001098536	exon19	c.2444_2445del	p.815_815del	.	.	182	32	171	0	.	0	0	0	0	0
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74912367	74912371	+	Frame_Shift_Del	DEL	ACCAG	ACCAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ACCAG	ACCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CLK3-358	NM_001130028	exon3	c.614_618del	p.205_206del	.	.	176	41	155	0	.	0	0	0	0	0
LOC100132247	0	broad.mit.edu	37	16	22545744	22545755	+	In_Frame_Del	DEL	TCCACCCTCAGC	TCCACCCTCAGC	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TCCACCCTCAGC	TCCACCCTCAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_001135865	exon7	c.1440_1451del	p.480_484del	TCCCCTTCCACCC	.	74	20	39	0	.	0	0	0	0	0
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19790040	19790040	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF101-92	NM_033204	exon4	c.242delA	p.E81fs	.	.	150	39	136	0	.	0	0	0	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233676027	233676029	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GIGYF2-28	NM_001103147	exon19	c.2035_2037del	p.679_679del	.	.	167	47	156	0	.	0	0	0	0	0
PPP3CA	5530	broad.mit.edu;bcgsc.ca	37	4	102030234	102030236	+	Frame_Shift_Del	DEL	AAC	AAC	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PPP3CA-227	NM_000944	exon3	c.260_261del	p.87_87del	CCCACAAACTGAA	.	52	9	57	0	.	0	0	0	0	0
HSPA4L	22824	broad.mit.edu;bcgsc.ca	37	4	128726257	128726266	+	Frame_Shift_Del	DEL	GAAATTGTAG	GAAATTGTAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GAAATTGTAG	GAAATTGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HSPA4L-228	NM_014278	exon9	c.1015_1024del	p.339_342del	AGTATAGAAATTG	.	134	16	164	0	.	0	0	0	0	0
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37017244	37017247	+	Frame_Shift_Del	DEL	ATAG	ATAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ATAG	ATAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NIPBL-293	NM_015384	exon24	c.4900_4903del	p.1634_1635del	.	.	173	76	141	0	.	0	0	0	0	0
TXNDC15	79770	broad.mit.edu;bcgsc.ca	37	5	134223683	134223688	+	In_Frame_Del	DEL	TGGCGC	TGGCGC	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGGCGC	TGGCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TXNDC15-154	NM_024715	exon2	c.402_407del	p.134_136del	TCTGGATGGCGCT	.	186	27	114	0	.	0	0	0	0	0
BRD8	10902	broad.mit.edu;bcgsc.ca	37	5	137506838	137506838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BRD8-91	NM_001164326	exon5	c.248delG	p.G83fs	TTTTCACCTCGTT	.	136	19	115	0	.	0	0	0	0	0
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43508701	43508701	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HECW1-669	NM_015052	exon16	c.3096delA	p.G1032fs	.	.	110	36	77	0	.	0	0	0	0	0
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99434139	99434139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CYP3A43-92	NM_057096	exon2	c.135delT	p.P45fs	.	.	88	21	103	0	.	0	0	0	0	0
KCNK9	51305	broad.mit.edu;bcgsc.ca	37	8	140631226	140631231	+	In_Frame_Del	DEL	TGTTCA	TGTTCA	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGTTCA	TGTTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNK9-93	NM_016601	exon2	c.395_400del	p.132_134del	CGAAGGTGTTCAT	.	213	0	191	0	.	0	0	0	0	0
MRPL21	219927	broad.mit.edu	37	11	68660882	68660883	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MRPL21-90	NM_181514	exon5	c.438_439insA	p.K146fs	GAGTGGCTTGCCA	.	141	7	107	0	.	0	0	0	0	0
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56827702	56827703	+	Frame_Shift_Ins	INS	-	-	CACG	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TIMELESS-159	NM_003920	exon3	c.106_107insCGTG	p.K36fs	.	.	156	30	152	0	.	0	0	0	0	0
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	126138829	126138830	+	In_Frame_Ins	INS	-	-	CAA	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TMEM132B-185	NM_052907	exon9	c.2810_2811insCAA	p.G937delinsGN	.	.	171	27	139	0	.	0	0	0	0	0
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37730035	37730036	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RAB11FIP1-92	NM_001002814	exon4	c.2285_2286insA	p.S762fs	.	.	128	27	91	0	.	0	0	0	0	0
DECR1	1666	hgsc.bcm.edu;bcgsc.ca	37	8	91029497	91029498	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DECR1-90	NM_001359	exon2	c.215_216insA	p.G72fs	.	.	127	44	102	0	.	0	0	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82808190	82808191	+	Missense_Mutation	DNP	CA	CA	GC	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	VCAN-238	NM_001126336	exon6	c.A1018C	p.S339R	GATAGCAGATTTG	.	109.0	34.0	114.0	0.0	.	0	0	0	0	0
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66449317	66449318	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MAST4-647	NM_015183	exon25	c.A2991T	p.A1189D	CCAGGCAGGACTG	.	73.0	14.0	56.0	0.0	.	0	0	0	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44922715	44922716	+	Nonsense_Mutation	DNP	GG	GG	TA	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KDM6A-2748	NM_021140	exon16	c.G1577A	p.G533*	CTAATGGGCCAAC	.	28.0	18.0	20.0	0.0	.	0	0	0	0	0
MKL1	57591	broad.mit.edu;bcgsc.ca	37	22	40825749	40825750	+	Missense_Mutation	DNP	GA	GA	AG	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MKL1-948	NM_020831	exon7	c.T161C	p.L54P	GCCTGGAGGGATG	.	124	35	99	2	.	0	0	0	0	0