Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271914	45271914	+	Missense_Mutation	SNP	C	C	A	rs17886308		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TCTEX1D4-91	NM_001013632	exon2	c.G427T	p.D143Y	CCTCGTCGCTGGA	.	6	2	5	1	C|0.997;A|0.003	0	0	0	0	0
AKR1A1	10327	hgsc.bcm.edu	37	1	46033809	46033809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	AKR1A1-226	NM_006066	exon6	c.A512G	p.D171G	TTGATGACATACT	.	39	2	41	0	.	110	110	0	0	0
STRIP1	85369	hgsc.bcm.edu	37	1	110583300	110583300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	.	NM_033088	exon6	c.T625C	p.S209P	GCCATCTCCCTGG	.	28	2	30	0	.	1	1	0	0	0
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167097085	167097085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	DUSP27-71	NM_001080426	exon5	c.A2717C	p.K906T	CCCAGAAACCTGA	.	56	5	66	0	.	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200860815	200860815	+	Silent	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	C1orf106-93	NM_018265	exon1	c.A189G	p.R63R	CGCCAGAGCTCCA	.	8	2	7	0	.	0	0	0	0	0
IRF2BP2	359948	hgsc.bcm.edu	37	1	234744215	234744215	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	IRF2BP2-90	NM_182972	exon1	c.C1026T	p.N342N	GGCCCCGTTGGCC	.	21	2	27	0	.	66	66	0	0	0
TAF10	6881	hgsc.bcm.edu	37	11	6632632	6632632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TAF10-90	NM_006284	exon3	c.T439C	p.S147P	GGTCTGAGGCCTC	.	49	3	61	0	.	0	0	0	0	0
MICALCL	84953	hgsc.bcm.edu	37	11	12316364	12316364	+	Silent	SNP	T	T	C	rs200708492		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MICALCL-91	NM_032867	exon3	c.T1386C	p.P462P	TCCTCCTCCTCCT	.	25	3	34	2	T|0.994;C|0.006	86	86	0	0	0
LRFN4	78999	hgsc.bcm.edu	37	11	66627272	66627272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	LRFN4-90	NM_024036	exon2	c.T1514A	p.L505Q	CGCCCCTGTGCCA	.	26	2	16	0	.	27	27	0	0	0
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102826393	102826393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MMP13-229	NM_002427	exon1	c.G42T	p.W14C	ATGAGTCCAGCTC	.	101	10	114	0	.	0	0	0	0	0
GRAMD1B	57476	hgsc.bcm.edu	37	11	123448255	123448255	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	GRAMD1B-69	NM_020716	exon2	c.G204A	p.Q68Q	CTCCCAGTCCGGC	.	8	3	5	2	.	1	1	0	0	0
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu	37	12	2614092	2614092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	CACNA1C-34	NM_001129831	exon8	c.G1198T	p.V400F	AACTTGGTTCTCG	.	22	8	28	0	.	0	0	0	0	0
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	KRAS-92875	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	37	19	29	0	.	10	6	4	0	0
TUBA1B	10376	hgsc.bcm.edu	37	12	49522587	49522587	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TUBA1B-90	NM_006082	exon4	c.C510T	p.S170S	GTAAATGGAGAAC	.	96	5	104	0	.	1	1	0	0	0
RAD9B	144715	hgsc.bcm.edu	37	12	110960047	110960047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	RAD9B-228	NM_152442	exon10	c.A956C	p.K319T	TTTCAAAAAAAGC	.	34	2	21	0	.	1	1	0	0	0
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29599704	29599704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MTUS2-218	NM_001033602	exon1	c.C899T	p.S300L	TGGCATCGAAGGA	.	32	9	32	0	.	0	0	0	0	0
NYNRIN	57523	hgsc.bcm.edu	37	14	24879003	24879003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	NYNRIN-3	NM_025081	exon4	c.T2003C	p.V668A	CCAAAGTACCTGT	.	26	4	24	1	.	1	1	0	0	0
ARHGAP5	394	hgsc.bcm.edu	37	14	32561433	32561433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ARHGAP5-94	NM_001173	exon2	c.A1558G	p.T520A	ATTCATACAGTTC	.	55	7	54	0	.	4	4	0	0	0
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70527578	70527578	+	Silent	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SLC8A3-225	NM_183002	exon3	c.G1863A	p.P621P	CCATTTCGGTTCA	.	71	22	101	0	.	0	0	0	0	0
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92470654	92470654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TRIP11-1400	NM_004239	exon11	c.A3666T	p.E1222D	CCACTCTTCCATT	.	64	28	78	0	.	11	7	4	0	0
ADSSL1	122622	hgsc.bcm.edu	37	14	105196230	105196230	+	Missense_Mutation	SNP	A	A	G	rs80097179	byfrequency;alternate_allele	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ADSSL1-515	NM_199165	exon1	c.A1G	p.M1V	GTCGGCATGGTGG	.	7	4	1	1	A|0.640;C|0.360	0	0	0	0	0
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25972305	25972305	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ATP10A-139	NM_024490	exon5	c.847+2T>A	.	GAGCCTACCTGCG	.	81	36	86	0	.	0	0	0	0	0
TBC1D2B	23102	hgsc.bcm.edu	37	15	78290635	78290635	+	Missense_Mutation	SNP	C	C	T	rs200408968		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TBC1D2B-136	NM_144572	exon13	c.G2759A	p.R920Q	GCGCGTCGGTTCC	.	16	4	21	1	C|0.960;T|0.040	13	13	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051886	79051886	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ADAMTS7-226	NM_014272	exon24	c.C4938T	p.C1646C	CGTCTCGCAGAAC	.	18	3	29	0	.	0	0	0	0	0
AMDHD2	51005	hgsc.bcm.edu	37	16	2580428	2580428	+	Nonsense_Mutation	SNP	C	C	T	rs141294706		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	AMDHD2-155	NM_001145815	exon11	c.C1453T	p.R485X	CAGCTTCGAGGCG	.	48	4	54	0	C|0.998;T|0.002	7	5	2	0	0
SMG1	23049	hgsc.bcm.edu	37	16	18849419	18849419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SMG1-1160	NM_015092	exon45	c.C7330G	p.Q2444E	CGGCCTGCTGGCC	.	39	3	38	0	.	7	7	0	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30718524	30718524	+	Silent	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SRCAP-94	NM_006662	exon5	c.G327T	p.R109R	GACTCGGATTGCT	.	90	34	77	0	.	6	4	2	0	0
SRCAP	10847	bcgsc.ca	37	16	30727477	30727477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SRCAP-94	NM_006662	exon17	c.T2584C	p.S862P	AGGCTCTCCAAGC	.	112	5	103	0	.	5	5	0	0	0
FHOD1	29109	hgsc.bcm.edu	37	16	67267851	67267851	+	Silent	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	FHOD1-221	NM_013241	exon13	c.T1755C	p.P585P	TGGGGGAGGGGGG	.	42	4	35	1	.	0	0	0	0	0
TBC1D29	26083	hgsc.bcm.edu	37	17	28890334	28890334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TBC1D29-22	NM_015594	exon5	c.G344A	p.R115K	CTCCAAGGGTGCC	.	76	4	78	0	.	0	0	0	0	0
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34261844	34261844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	LYZL6-90	NM_020426	exon4	c.G403A	p.G135S	GCCGGCCTGAACA	.	77	19	83	0	.	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45234324	45234324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	CDC27-291	NM_001114091	exon7	c.G797A	p.R266Q	AAACTTCGACCAG	.	93	6	62	1	.	8	8	0	0	0
PHOSPHO1	162466	broad.mit.edu	37	17	47302352	47302352	+	Silent	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	PHOSPHO1-90	NM_001143804	exon3	c.C135A	p.A45A	CTGCGCGGCCATC	.	6	2	11	0	.	0	0	0	0	0
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48600413	48600413	+	Silent	SNP	A	A	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MYCBPAP-230	NM_032133	exon11	c.A1500T	p.R500R	CTGGCGACGGCAG	.	144	54	165	0	.	0	0	0	0	0
C18orf56	494514	hgsc.bcm.edu	37	18	658048	658048	+	Missense_Mutation	SNP	C	C	G	rs190076880		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	C18orf56-90	NM_001012716	exon1	c.G200C	p.R67T	TTAGTCCTAACCT	.	13	9	8	1	C|0.993;G|0.007	0	0	0	0	0
ZNF431	170959	hgsc.bcm.edu	37	19	21365595	21365595	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ZNF431-514	NM_133473	exon5	c.G489A	p.E163E	TAATGAGCTAAAC	.	98	16	68	2	.	0	0	0	0	0
ZNF285	26974	hgsc.bcm.edu	37	19	44891126	44891126	+	Silent	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ZNF285-94	NM_152354	exon4	c.A1281T	p.P427P	CCTATATGGTTTC	.	96	5	103	0	.	6	6	0	0	0
GRIN2D	2906	ucsc.edu;bcgsc.ca	37	19	48908457	48908457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	GRIN2D-156	NM_000836	exon3	c.G932A	p.G311D	CGGCTGGCTGGCG	.	13	5	19	0	.	0	0	0	0	0
ZNF816	125893	hgsc.bcm.edu;bcgsc.ca	37	19	53454065	53454065	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ZNF816-68	NM_001202457	exon4	c.C963T	p.T321T	ACTGAAGGTCTTG	.	135	11	140	2	.	4	4	0	0	0
ZNF497	162968	hgsc.bcm.edu	37	19	58867849	58867849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ZNF497-90	NM_001207009	exon2	c.C1153G	p.P385A	CGAAGGGCTTGGC	.	10	4	6	2	.	3	0	3	0	0
HOXD1	3231	hgsc.bcm.edu	37	2	177053728	177053728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	HOXD1-90	NM_024501	exon1	c.G199C	p.A67P	CCCCCGGCCGCCC	.	2	2	1	0	.	0	0	0	0	0
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217279802	217279802	+	Silent	SNP	C	C	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SMARCAL1-293	NM_014140	exon3	c.C375G	p.P125P	TCCTCCCTTGGCA	.	109	44	105	0	.	7	7	0	0	0
SLMO2	51012	hgsc.bcm.edu	37	20	57611524	57611524	+	Splice_Site	SNP	A	A	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SLMO2-45	NM_016045	exon6	c.465+2T>G	.	TCACTTACTTTAC	.	82	7	106	1	.	0	0	0	0	0
SLMO2	51012	hgsc.bcm.edu	37	20	57611629	57611629	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SLMO2-45	NM_016045	exon6	c.363-1G>A	.	ACAGTTCTGGAAC	.	76	4	90	0	.	0	0	0	0	0
MST1	4485	hgsc.bcm.edu	37	3	49723522	49723522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MST1-278	NM_020998	exon9	c.C1120T	p.R374C	TACAACGCCGGAT	.	30	4	40	2	.	105	103	2	0	0
DNAH1	25981	hgsc.bcm.edu	37	3	52431781	52431781	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	DNAH1-67	NM_015512	exon74	c.T11846A	p.L3949Q	TTGGCCTGCATGA	.	54	3	54	0	.	6	6	0	0	0
VPS8	23355	hgsc.bcm.edu	37	3	184717520	184717520	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	VPS8-91	NM_001009921	exon44	c.C3873G	p.N1291K	ACAAAACAAAGAA	.	29	2	34	0	.	38	38	0	0	0
ABCE1	6059	hgsc.bcm.edu	37	4	146033407	146033407	+	Missense_Mutation	SNP	C	C	G	rs80263613		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ABCE1-91	NM_002940	exon9	c.C727G	p.P243A	GATGAGCCTTCTA	.	22	3	16	0	.	13	13	0	0	0
LYRM7	90624	hgsc.bcm.edu	37	5	130517930	130517930	+	Missense_Mutation	SNP	A	A	C	rs200336982		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	LYRM7-68	NM_181705	exon3	c.A100C	p.I34L	GCCAGAATAAAGA	.	27	6	3	1	A|0.999;C|0.001	0	0	0	0	0
ANXA6	309	hgsc.bcm.edu	37	5	150518240	150518240	+	Nonsense_Mutation	SNP	G	G	T	rs188111044	by1000genomes;alternate_allele	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ANXA6-22	NM_001155	exon5	c.C317A	p.S106X	CTTACCGAGATGG	.	23	2	32	0	G|0.999;A|0.001	0	0	0	0	0
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu	37	6	36842542	36842542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	PPIL1-91	NM_016059	exon1	c.G7A	p.A3T	GAATTGCCGCCAT	.	27	3	38	0	.	22	22	0	0	0
TYW1	55253	hgsc.bcm.edu	37	7	66474575	66474575	+	Silent	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TYW1-91	NM_018264	exon4	c.C279T	p.F93F	GGGATTCGCAACA	.	99	5	62	0	.	0	0	0	0	0
SEMA3E	9723	hgsc.bcm.edu	37	7	83023612	83023612	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SEMA3E-93	NM_012431	exon14	c.1500+1G>C	.	AACTTACCCGCTT	.	59	3	50	0	.	0	0	0	0	0
MBLAC1	255374	hgsc.bcm.edu	37	7	99725439	99725439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MBLAC1-135	NM_203397	exon2	c.G421A	p.G141R	CTTCCCGGAGGCC	.	6	2	14	0	.	3	3	0	0	0
FBXW2	26190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123527053	123527053	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	FBXW2-227	NM_012164	exon8	c.C1149T	p.D383D	GCGGTTGTCAAAC	.	125	11	139	0	.	29	27	2	0	0
PHKA2	5256	bcgsc.ca	37	X	18972370	18972370	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	PHKA2-131	NM_000292	exon3	c.237+2T>C	.	ACTATTACCTGCT	.	92	4	71	0	.	0	0	0	0	0
RNF128	79589	hgsc.bcm.edu	37	X	106031218	106031218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	RNF128-227	NM_194463	exon4	c.T875C	p.I292T	TACGCATCTTAAC	.	26	2	29	0	.	0	0	0	0	0
BICD1	636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	32491723	32491724	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	BICD1-153	NM_001714	exon8	c.2574_2575del	p.858_859del	.	.	182	62	200	0	.	0	0	0	0	0
LOC100132247	0	broad.mit.edu	37	16	22545578	22545580	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	.	NM_001135865	exon7	c.1274_1276del	p.425_426del	CGGATGATAATCT	.	180	3	178	0	.	0	0	0	0	0