Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3342300	3342300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PRDM16-660	NM_022114	exon13	c.A3095G	p.H1032R	ACGAGCACGAGAA	.	123	24	137	0	.	0	0	0	0	0
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6639491	6639491	+	Silent	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	TAS1R1-516	NM_138697	exon6	c.C2373T	p.A791A	TGCGGCCAACATG	.	114	46	105	0	.	0	0	0	0	0
COL8A2	1296	hgsc.bcm.edu;bcgsc.ca	37	1	36564488	36564488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	COL8A2-90	NM_005202	exon2	c.A794G	p.E265G	CCTGGCTCCCCCC	.	65	4	61	0	.	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu	37	1	39908528	39908528	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MACF1-165	NM_012090	exon75	c.C13070G	p.S4357X	GGGAGTCAGTGTT	.	46	3	67	0	.	43	43	0	0	0
NPR1	4881	hgsc.bcm.edu	37	1	153651704	153651704	+	Silent	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	NPR1-393	NM_000906	exon1	c.A120G	p.V40V	CGTGGTACTGCCG	.	2	2	1	0	.	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176809321	176809321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PAPPA2-548	NM_020318	exon22	c.G5215A	p.D1739N	CAAGCAGATGGTT	.	310	90	277	0	.	0	0	0	0	0
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237604652	237604652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RYR2-158	NM_001035	exon13	c.G1039C	p.D347H	GAAGTAGATGGCA	.	133	5	112	0	.	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu	37	10	73454012	73454012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	CDH23-563	NM_022124	exon20	c.C2285G	p.A762G	GCATCGCCACCGT	.	32	2	34	0	.	0	0	0	0	0
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89501012	89501012	+	Silent	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PAPSS2-493	NM_001015880	exon10	c.C1107T	p.D369D	TGGGGACTGGCTG	.	119	34	155	1	.	16	4	12	0	0
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	22294380	22294380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	ANO5-515	NM_213599	exon19	c.C2080A	p.P694T	TTGGCTCCTCTTC	.	98	29	98	1	.	0	0	0	0	0
HSD17B12	51144	hgsc.bcm.edu	37	11	43837920	43837920	+	Silent	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	HSD17B12-90	NM_016142	exon6	c.T480C	p.I160I	AAATATTAATATT	.	40	3	16	0	.	57	57	0	0	0
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63679913	63679913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RCOR2-92	NM_173587	exon11	c.G1121T	p.R374L	CGGCGCCGGTAGC	.	180	55	188	0	.	0	0	0	0	0
EHBP1L1	254102	hgsc.bcm.edu	37	11	65346571	65346571	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	EHBP1L1-69	NM_001099409	exon2	c.G127C	p.V43L	GTGGTGGTATGGA	.	19	2	17	0	.	13	13	0	0	0
RBM4B	83759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66444485	66444485	+	Silent	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RBM4B-90	NM_031492	exon2	c.C66T	p.F22F	CTGCTCGAAGAGT	.	235	52	259	0	.	98	98	0	0	0
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92917687	92917687	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SLC36A4-93	NM_152313	exon4	c.180-1G>T	.	ACAAATCTGAAAA	.	135	50	135	0	.	0	0	0	0	0
TEP1	7011	broad.mit.edu;bcgsc.ca	37	14	20840924	20840924	+	Silent	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	TEP1-95	NM_007110	exon49	c.A7044G	p.K2348K	CCGCAGTTTCACT	.	186	7	229	1	.	15	14	1	0	0
SLC9A3R2	9351	hgsc.bcm.edu	37	16	2077090	2077090	+	Missense_Mutation	SNP	G	G	C	rs73496087		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SLC9A3R2-23	NM_004785	exon1	c.G84C	p.E28D	CGGCGAGAAGGGC	.	4	4	1	1	G|0.962;C|0.038	0	0	0	0	0
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30490672	30490672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	ITGAL-994	NM_002209	exon6	c.G466A	p.D156N	AACGTAGACCTGG	.	101	43	104	0	.	2	2	0	0	0
MMP15	4324	hgsc.bcm.edu	37	16	58079306	58079306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MMP15-713	NM_002428	exon10	c.C1966T	p.R656C	GCGCCACGTGTCC	.	10	7	2	1	.	21	13	8	0	0
KRT10	3858	hgsc.bcm.edu	37	17	38975327	38975327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	KRT10-90	NM_000421	exon7	c.A1460C	p.H487P	CCGCCGTGGCCGC	.	9	5	1	1	.	0	0	0	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296626	39296626	+	Silent	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	.	NM_030976	exon1	c.C114T	p.P38P	GCAGCTGGGGCGG	.	210	5	139	1	.	0	0	0	0	0
C17orf82	388407	hgsc.bcm.edu	37	17	59489911	59489911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	C17orf82-226	NM_203425	exon1	c.G575C	p.G192A	GAGATGGCGCTGC	.	13	4	1	1	.	0	0	0	0	0
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2951317	2951317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	LPIN2-227	NM_014646	exon4	c.C326A	p.P109H	TCAGTAGGAATTG	.	88	10	90	1	.	28	19	9	0	0
JSRP1	126306	hgsc.bcm.edu	37	19	2253780	2253780	+	Missense_Mutation	SNP	A	A	G	rs10426549		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	JSRP1-91	NM_144616	exon5	c.T275C	p.V92A	GCGGGGACGCTCC	.	2	2	0	0	A|0.832;G|0.168	0	0	0	0	0
MRPL54	116541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3762750	3762750	+	Missense_Mutation	SNP	G	G	T	rs200308520		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MRPL54-90	NM_172251	exon1	c.G52T	p.A18S	TGGGGGGCCTGGG	.	140	42	138	0	G|0.999;T|0.000	65	40	25	0	0
SHD	56961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4290585	4290585	+	Silent	SNP	C	C	T	rs111268424		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SHD-90	NM_020209	exon6	c.C978T	p.A326A	GGGTGCCGAGCAT	.	107	42	105	0	C|0.500;T|0.500	0	0	0	0	0
SPTBN4	57731	hgsc.bcm.edu	37	19	41025619	41025619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SPTBN4-94	NM_020971	exon16	c.C3215G	p.A1072G	GGGGCGCGCTAGC	.	2	2	0	0	.	0	0	0	0	0
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	6	6	0	0	T|0.245;C|0.755	0	0	0	0	0
GREB1	9687	broad.mit.edu;bcgsc.ca	37	2	11716612	11716612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	GREB1-91	NM_148903	exon5	c.T588A	p.N196K	CCGTAATGCACAA	.	182	7	160	0	.	0	0	0	0	0
TP53RK	112858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	45315804	45315804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	TP53RK-333	NM_033550	exon2	c.A350G	p.E117G	GAGCCTTCAATTT	.	360	116	408	1	.	17	7	10	0	0
EVA1C	59271	hgsc.bcm.edu	37	21	33785313	33785313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	.	NM_058187	exon1	c.A152G	p.D51G	TCACCGACTTCTC	.	31	2	28	0	.	1	1	0	0	0
KDELR3	11015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38877225	38877225	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	KDELR3-92	NM_016657	exon4	c.G360A	p.W120X	CCTCTGGACTTTC	.	282	79	285	0	.	0	0	0	0	0
GRM2	2912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51750001	51750001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	GRM2-522	NM_000839	exon4	c.C2212T	p.L738F	GTGCTCCTCATCG	.	104	31	133	0	.	0	0	0	0	0
PBRM1	55193	hgsc.bcm.edu	37	3	52678740	52678740	+	Silent	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PBRM1-575	NM_018313	exon9	c.T879C	p.A293A	TGACTTAGCCATT	.	27	2	25	0	.	4	4	0	0	0
LMOD3	56203	hgsc.bcm.edu	37	3	69169080	69169080	+	Silent	SNP	T	T	C	rs111848977		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	LMOD3-23	NM_198271	exon2	c.A426G	p.E142E	ATCTGTTTCTTGG	.	7	4	6	1	T|0.995;C|0.005	0	0	0	0	0
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113376859	113376859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	KIAA2018-93	NM_001009899	exon7	c.G3670T	p.A1224S	AAGATGCATTTGA	.	101	29	97	0	.	2	2	0	0	0
MUC20	200958	hgsc.bcm.edu	37	3	195456549	195456549	+	Missense_Mutation	SNP	T	T	C	rs201857816		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	.	NM_152673	exon4	c.T1487C	p.L496P	TGCGGCTGAGTGT	.	22	6	24	1	.	19	17	2	0	0
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123305047	123305047	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	ADAD1-90	NM_139243	exon5	c.C455G	p.S152C	CTAGATCCAATGC	.	115	29	99	0	.	0	0	0	0	0
PGBD1	84547	broad.mit.edu;bcgsc.ca	37	6	28269463	28269463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PGBD1-94	NM_001184743	exon7	c.C1832T	p.A611V	ACTTCGCTGATGT	.	272	9	250	0	.	0	0	0	0	0
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	137245376	137245376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SLC35D3-91	NM_001008783	exon2	c.G793A	p.A265T	AGCATCGCCACCA	.	76	12	72	0	.	0	0	0	0	0
IFNGR1	3459	broad.mit.edu;bcgsc.ca	37	6	137519461	137519461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	IFNGR1-91	NM_000416	exon7	c.G1177T	p.A393S	TTAAAGCGATGCT	.	101	5	123	0	.	73	72	0	1	0
RP9	6100	broad.mit.edu	37	7	33136131	33136131	+	Silent	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RP9-90	NM_203288	exon5	c.C441T	p.D147D	TTTATTGTCTCGT	.	111	6	127	1	.	19	19	0	0	0
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107572810	107572810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	LAMB1-97	NM_002291	exon28	c.C4201T	p.P1401S	CTGGGGGTGTTCC	.	152	45	132	1	.	0	0	0	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121653581	121653581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PTPRZ1-699	NM_002851	exon12	c.G4481T	p.S1494I	CAGACAGTCAAAC	.	91	29	78	0	.	0	0	0	0	0
SHH	6469	hgsc.bcm.edu	37	7	155596098	155596098	+	Silent	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SHH-1134	NM_000193	exon3	c.C885T	p.S295S	GCCCCCGGAAGGC	.	5	4	3	1	.	0	0	0	0	0
SCARA5	286133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27737097	27737097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SCARA5-91	NM_173833	exon8	c.G1340A	p.R447Q	CCGAATCGAGCTG	.	187	49	171	0	.	0	0	0	0	0
RAD21	5885	broad.mit.edu;bcgsc.ca	37	8	117862960	117862960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RAD21-227	NM_006265	exon12	c.C1517T	p.P506L	TCTTCTGGGGGAA	.	165	7	144	0	.	119	112	6	1	0
FBXL6	26233	hgsc.bcm.edu	37	8	145581950	145581950	+	Missense_Mutation	SNP	C	C	G	rs200282665		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	FBXL6-658	NM_024555	exon1	c.G158C	p.G53A	GCGGGGCCGGGTT	.	9	5	4	1	C|0.985;G|0.015	0	0	0	0	0
CCIN	881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	36170395	36170395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	CCIN-92	NM_005893	exon1	c.C896T	p.A299V	TGTTTGCTTATAT	.	135	8	169	0	.	0	0	0	0	0
USP20	10868	hgsc.bcm.edu	37	9	132625508	132625508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	USP20-658	NM_001008563	exon9	c.C541T	p.R181C	CTGGTGCGCACAG	.	8	6	5	2	.	10	6	4	0	0
MAP7D3	79649	broad.mit.edu	37	X	135312676	135312676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MAP7D3-110	NM_024597	exon10	c.T1618C	p.Y540H	TTTTATAAGGAAA	.	228	3	204	0	.	28	28	0	0	0
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	47005807	47005807	+	Splice_Site	DEL	C	C	-	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	DNAJA2-226	NM_005880	exon3	c.138+1G>-	.	.	.	155	47	179	0	.	0	0	0	0	0
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	47422875	47422875	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	.	NM_004491	exon1	c.943delC	p.Q315fs	.	.	46	13	55	0	.	0	0	0	0	0
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	62477094	62477096	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	CADPS-281	NM_183394	exon20	c.2974_2976del	p.992_992del	.	.	191	53	203	0	.	0	0	0	0	0