Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 MTOR 2475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 11184573 11184573 + Missense_Mutation SNP G G T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . MTOR-1439 NM_004958 exon47 c.C6644A p.S2215Y CGAAGAGATGTTG . 71 24 83 0 . 11 9 2 0 0 BEST4 266675 hgsc.bcm.edu 37 1 45252159 45252159 + Missense_Mutation SNP T T C rs41306591 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . BEST4-91 NM_153274 exon3 c.A457G p.T153A CCATGGTGGGGAA . 8 3 2 1 T|0.997;C|0.003 0 0 0 0 0 MROH7 374977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 55118778 55118778 + Missense_Mutation SNP A A C novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_001039464 exon3 c.A179C p.D60A TTCCAGATCTTAA . 148 46 144 0 . 0 0 0 0 0 TRIM33 51592 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 114948195 114948195 + Missense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . TRIM33-1351 NM_033020 exon15 c.C2605T p.H869Y ACCTGTGCATGAG . 243 65 243 0 . 5 3 2 0 0 OBSCN 84033 hgsc.bcm.edu 37 1 228467538 228467538 + Silent SNP C C G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . OBSCN-403 NM_001271223 exon33 c.C8700G p.L2900L AGTCCTCACACGG . 29 2 24 0 . 1 1 0 0 0 RYR2 6262 hgsc.bcm.edu 37 1 237804221 237804221 + Missense_Mutation SNP C C G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . RYR2-158 NM_001035 exon47 c.C7140G p.D2380E AGATGACACTATC . 30 2 55 0 . 0 0 0 0 0 CCDC7 221016 broad.mit.edu 37 10 32854549 32854549 + Splice_Site SNP G G T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CCDC7-90 NM_145023 exon15 c.1197+1G>T . TTACAGGTAAAGG . 45 3 43 0 . 0 0 0 0 0 ZNF488 118738 broad.mit.edu 37 10 48371023 48371023 + Missense_Mutation SNP G G T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ZNF488-91 NM_153034 exon2 c.G491T p.S164I CCTTTAGCAAACC . 88 5 124 0 . 0 0 0 0 0 C10orf137 26098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 127442312 127442312 + Missense_Mutation SNP A A G rs199695348 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . C10orf137-590 NM_001202438 exon24 c.A3443G p.N1148S GTCTCAATCGAGA . 120 42 132 0 A|0.999;G|0.001 6 4 2 0 0 MUC5B 727897 hgsc.bcm.edu 37 11 1268488 1268488 + Missense_Mutation SNP C C T rs200106077 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_002458 exon31 c.C10378T p.P3460S TCCCTGCCCCCCA . 112 13 95 2 . 0 0 0 0 0 TCN1 6947 bcgsc.ca 37 11 59622265 59622265 + Silent SNP A A G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . TCN1-92 NM_001062 exon7 c.T981C p.P327P GTCAGGAGGTGTC . 150 5 94 0 . 121 121 0 0 0 SLCO2B1 11309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 74883496 74883496 + Missense_Mutation SNP G G C novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . SLCO2B1-154 NM_007256 exon7 c.G854C p.G285A CTGCCGGTGCAGT . 103 30 84 0 . 10 10 0 0 0 ARHGEF12 23365 broad.mit.edu 37 11 120300474 120300474 + Silent SNP C C T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ARHGEF12-661 NM_015313 exon10 c.C717T p.I239I AGAGATCCAAGAG . 103 4 85 0 . 17 16 1 0 0 GTSF1 121355 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 54857070 54857070 + Silent SNP A A G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . GTSF1-90 NM_144594 exon4 c.T129C p.D43D TGCAACATCAGGA . 93 27 85 0 . 0 0 0 0 0 AGAP2 116986 hgsc.bcm.edu 37 12 58120409 58120409 + Missense_Mutation SNP C C T rs199546118 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . AGAP2-716 NM_001122772 exon19 c.G3505A p.A1169T GCGTGGCGGTGAT . 7 6 3 0 . 0 0 0 0 0 NAV3 89795 hgsc.bcm.edu 37 12 78574710 78574710 + Silent SNP A A G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . NAV3-279 NM_014903 exon29 c.A5511G p.T1837T TAACACAGCTAAG . 75 26 38 0 . 0 0 0 0 0 SHISA2 387914 hgsc.bcm.edu 37 13 26625047 26625047 + Silent SNP G G A rs4770911 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . SHISA2-69 NM_001007538 exon1 c.C67T p.L23L CAGCCAGCAGCAG . 9 5 3 1 G|0.870;A|0.130 1 0 1 0 0 FRY 10129 bcgsc.ca 37 13 32811616 32811616 + Missense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . FRY-142 NM_023037 exon44 c.G5911A p.A1971T AACACCGCAACTG . 84 6 86 1 . 4 4 0 0 0 MYH6 4624 hgsc.bcm.edu;broad.mit.edu 37 14 23859655 23859655 + Missense_Mutation SNP C C G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . MYH6-94 NM_002471 exon26 c.G3343C p.A1115P TGCGTGCCTGGGT . 43 14 39 0 . 0 0 0 0 0 COCH 1690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 31353851 31353851 + Missense_Mutation SNP A A C novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . COCH-228 NM_004086 exon9 c.A722C p.N241T GGGGTAATTCCAA . 71 18 64 0 . 0 0 0 0 0 DTD2 112487 hgsc.bcm.edu 37 14 31926584 31926584 + Missense_Mutation SNP G G A rs3087952 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_080664 exon1 c.C16T p.R6W GAATCCGGCTACC . 11 2 11 1 . 4 2 2 0 0 TRAF7 84231 hgsc.bcm.edu 37 16 2222231 2222231 + Missense_Mutation SNP T T G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . TRAF7-661 NM_032271 exon8 c.T515G p.V172G TGGTGGTGAACAA . 56 3 61 0 . 26 25 0 0 1 CCDC64B 146439 hgsc.bcm.edu 37 16 3081004 3081004 + Nonsense_Mutation SNP G G A rs199875074 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_001103175 exon2 c.C430T p.R144X GTTCTCGCCCACT . 12 8 9 2 . 0 0 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 404 64 373 57 . 14 0 14 0 0 ABCC3 8714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48734448 48734448 + Silent SNP C C T rs139452504 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ABCC3-93 NM_003786 exon4 c.C390T p.G130G GCAGGGCGTACAG . 137 27 118 1 C|0.998;T|0.002 10 8 2 0 0 EPX 8288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 56281634 56281634 + Silent SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . EPX-92 NM_000502 exon12 c.G1998A p.L666L GGCCCTGAGCAGA . 113 35 123 1 . 1 0 1 0 0 CCDC57 284001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 80129603 80129603 + Missense_Mutation SNP C C G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CCDC57-24 NM_198082 exon12 c.G1856C p.S619T CGGACGCTGGGCT . 90 15 79 0 . 3 3 0 0 0 EPB41L3 23136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 5416056 5416056 + Missense_Mutation SNP T T A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . EPB41L3-95 NM_012307 exon13 c.A1828T p.N610Y AAAGGTTGGGGAA . 138 37 137 0 . 0 0 0 0 0 PRAM1 84106 hgsc.bcm.edu 37 19 8563524 8563524 + Nonsense_Mutation SNP C C A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_032152 exon2 c.G1168T p.E390X AGCTCTCGGAAGC . 21 2 27 0 . 5 5 0 0 0 TMEM205 374882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 11453637 11453637 + Missense_Mutation SNP G G T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . TMEM205-22 NM_033408 exon4 c.C424A p.Q142K GCAGCTGGCGGTA . 149 48 111 0 . 226 128 98 0 0 ANO8 57719 hgsc.bcm.edu 37 19 17439378 17439378 + Missense_Mutation SNP G G A rs73511896 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ANO8-93 NM_020959 exon13 c.C1819T p.L607F CCAGGAGGCCCCC . 9 5 3 1 G|0.992;A|0.008 1 1 0 0 0 CACNG8 59283 hgsc.bcm.edu 37 19 54485464 54485464 + Missense_Mutation SNP C C G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CACNG8-90 NM_031895 exon4 c.C639G p.F213L GTCGTTCATCCTG . 37 2 40 0 . 0 0 0 0 0 ISOC2 79763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55966664 55966664 + Nonsense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ISOC2-91 NM_024710 exon4 c.C430T p.Q144X GGACCTGCAGCCC . 28 5 29 0 . 33 31 2 0 0 DHRS9 10170 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 169938176 169938176 + Missense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . DHRS9-90 NM_005771 exon5 c.G85A p.D29N ATCACTGATAAGT . 134 7 121 0 . 0 0 0 0 0 CDCA7 83879 bcgsc.ca 37 2 174231883 174231883 + Nonsense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CDCA7-91 NM_031942 exon9 c.G1191A p.W397X GAACTGGCATTGC . 138 6 115 1 . 0 0 0 0 0 PGAP1 80055 hgsc.bcm.edu;broad.mit.edu 37 2 197781305 197781305 + Missense_Mutation SNP C C A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . PGAP1-93 NM_024989 exon3 c.G314T p.G105V ATGGAGCCAATAG . 47 9 48 0 . 0 0 0 0 0 SPAG16 79582 hgsc.bcm.edu 37 2 214204970 214204970 + Missense_Mutation SNP A A C novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . SPAG16-188 NM_024532 exon6 c.A620C p.N207T AAAAAAACAAATT . 39 2 46 0 . 2 2 0 0 0 DHX35 60625 bcgsc.ca 37 20 37623476 37623476 + Silent SNP C C A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . DHX35-226 NM_021931 exon8 c.C595A p.R199R AAAAAGCGAGGGG . 170 6 144 0 . 0 0 0 0 0 PTPRT 11122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 41306544 41306544 + Missense_Mutation SNP G G T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . PTPRT-664 NM_007050 exon7 c.C1115A p.P372Q CCTGGCGGTCCCG . 150 42 124 0 . 0 0 0 0 0 TMEM189 387521 hgsc.bcm.edu 37 20 48770156 48770156 + Missense_Mutation SNP A A C rs2026757 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . TMEM189-22 NM_199129 exon1 c.T19G p.W7G CCGGCCAGTTCTC . 10 7 2 0 A|0.903;C|0.097 0 0 0 0 0 MYT1 4661 broad.mit.edu 37 20 62851191 62851191 + Silent SNP C C T rs117853857 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . MYT1-704 NM_004535 exon13 c.C2097T p.D699D TCCCGACGCCTCC . 19 5 22 0 C|0.999;T|0.001 0 0 0 0 0 SLC9C1 285335 hgsc.bcm.edu 37 3 111983130 111983130 + Silent SNP T T C novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_183061 exon9 c.A939G p.L313L AGGAATTAGAAGT . 28 2 11 0 . 0 0 0 0 0 CLCN2 1181 hgsc.bcm.edu 37 3 184075764 184075764 + Missense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CLCN2-90 NM_001171087 exon5 c.C601T p.P201S CAAGCGGCATCCC . 100 5 119 0 . 0 0 0 0 0 ITGA2 3673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 52366069 52366069 + Silent SNP C C G rs142557473 alternate_allele TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ITGA2-226 NM_002203 exon17 c.C2214G p.P738P TTGCCCCGAGCAC . 114 34 57 0 C|1.000;T|0.000 11 6 5 0 0 ADAMTS19 171019 hgsc.bcm.edu 37 5 128797258 128797258 + Silent SNP G G C rs147557427 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ADAMTS19-295 NM_133638 exon2 c.G537C p.L179L CCTGCTGCTCCGG . 7 4 7 1 G|0.993;C|0.007 0 0 0 0 0 ANKHD1 54882 hgsc.bcm.edu 37 5 139828840 139828840 + Missense_Mutation SNP C C G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ANKHD1-185 NM_024668 exon7 c.C1192G p.Q398E GCAGATCAAGAGC . 31 2 29 0 . 10 10 0 0 0 PCDHAC1 56135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140307713 140307713 + Silent SNP A A G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . PCDHAC1-28 NM_031882 exon1 c.A1236G p.Q412Q ATACCAAGTCCTG . 99 22 90 0 . 0 0 0 0 0 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 169446069 169446069 + Missense_Mutation SNP A A G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . DOCK2-97 NM_004946 exon33 c.A3338G p.D1113G TCTTCGACATGAT . 308 74 350 1 . 3 3 0 0 0 HLA-A 3105 hgsc.bcm.edu 37 6 29910594 29910594 + Missense_Mutation SNP G G A rs199474366 TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . HLA-A-92 NM_001242758 exon2 c.G134A p.R45H AGCCCCGCTTCAT . 56 5 67 0 A|0.001;G|0.999 1765 1761 3 1 0 PKIB 5570 hgsc.bcm.edu 37 6 123022647 123022647 + Splice_Site SNP T T C novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . PKIB-90 NM_001270394 exon6 c.13+2T>C . CCAGGGTATAGTT . 21 2 21 0 . 0 0 0 0 0 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 47944905 47944905 + Missense_Mutation SNP T T A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . PKD1L1-145 NM_138295 exon11 c.A1540T p.N514Y TTCCATTTGTGTA . 174 37 221 0 . 0 0 0 0 0 ZKSCAN5 23660 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99129235 99129235 + Missense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ZKSCAN5-91 NM_145102 exon7 c.G1883A p.S628N TGCACAGTGGGGA . 85 5 84 0 . 10 10 0 0 0 VGF 7425 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100806695 100806695 + Missense_Mutation SNP T T A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . VGF-90 NM_003378 exon2 c.A1430T p.E477V TTCTCCTCCACCT . 56 15 73 0 . 0 0 0 0 0 TBXAS1 6916 hgsc.bcm.edu;bcgsc.ca 37 7 139719838 139719838 + Missense_Mutation SNP T T C novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . TBXAS1-155 NM_030984 exon12 c.T1381C p.X461Q TGCAGCTAGAATC . 79 4 100 0 . 16 16 0 0 0 CPA6 57094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 68397000 68397000 + Missense_Mutation SNP G G A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CPA6-92 NM_020361 exon7 c.C661T p.P221S TGGCTGGGTCACT . 85 21 74 0 . 0 0 0 0 0 MROH1 727957 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 8 145267981 145267981 + Missense_Mutation SNP C C T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . NM_001099280 exon13 c.C1226T p.P409L CTGCTCCGCAGCC . 118 21 134 0 . 1 1 0 0 0 WNK2 65268 hgsc.bcm.edu 37 9 96055159 96055159 + Silent SNP C C T rs56125631 bycluster TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . WNK2-765 NM_006648 exon22 c.C5412T p.P1804P CGAGCCCGTGTCC . 5 3 10 1 C|0.986;T|0.014 0 0 0 0 0 FLJ44635 0 ucsc.edu 37 X 71379997 71379997 + Silent SNP C C G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . FLJ44635-108 NM_207422 exon2 c.C318G p.G106G CAAAGGCAAACTG . 117 1 122 0 . 4 0 4 0 0 RGAG1 57529 bcgsc.ca 37 X 109695057 109695057 + Missense_Mutation SNP A A T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . RGAG1-132 NM_020769 exon3 c.A1212T p.R404S AGTAAGAGCTTTA . 647 180 579 0 . 0 0 0 0 0 MBNL3 55796 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 131540269 131540269 + Missense_Mutation SNP T T A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . MBNL3-130 NM_018388 exon2 c.A329T p.Q110L GACATTTGAGCGT . 183 62 180 0 . 0 0 0 0 0 CDR1 1038 hgsc.bcm.edu 37 X 139866440 139866440 + Missense_Mutation SNP A A G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CDR1-130 NM_004065 exon1 c.T92C p.V31A AAAGGTACGTCTT . 299 16 145 2 . 0 0 0 0 0 SLC6A8 6535 broad.mit.edu 37 X 152960547 152960547 + Nonsense_Mutation SNP C C T novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . SLC6A8-131 NM_005629 exon13 c.C1786T p.Q596X CTGACCCAGCCCA . 23 3 35 0 . 77 77 0 0 0 ATP6AP1 537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 153657422 153657422 + Missense_Mutation SNP C C A novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . ATP6AP1-138 NM_001183 exon2 c.C190A p.H64N GACACTCATGAAG . 130 33 137 0 . 59 59 0 0 0 GPRIN2 9721 hgsc.bcm.edu 37 10 46999189 46999190 + Frame_Shift_Del DEL CA CA - novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 CA CA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . GPRIN2-90 NM_014696 exon3 c.309_310del p.103_104del . . 68 11 65 0 . 0 0 0 0 0 TUBGCP5 114791 broad.mit.edu;bcgsc.ca 37 15 22872435 22872444 + Frame_Shift_Del DEL AAACTGCCAT AAACTGCCAT - novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 AAACTGCCAT AAACTGCCAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . TUBGCP5-91 NM_052903 exon22 c.2964_2973del p.988_991del TTTTAAAAACTGC . 114 8 116 0 . 0 0 0 0 0 SPAG9 9043 broad.mit.edu 37 17 49063070 49063071 + Frame_Shift_Del DEL AA AA - novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . SPAG9-659 NM_001130528 exon23 c.3008_3009del p.1003_1003del ACTGAGAATCGAA . 36 8 35 0 . 0 0 0 0 0 EIF4G1 1981 broad.mit.edu 37 3 184039744 184039746 + In_Frame_Del DEL GAA GAA - novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 GAA GAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . EIF4G1-344 NM_001194946 exon11 c.1393_1395del p.465_465del GAAATGGAAGAAG . 150 9 121 0 . 0 0 0 0 0 POLR2B 5431 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 57888371 57888373 + In_Frame_Del DEL AAG AAG - novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 AAG AAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . POLR2B-92 NM_000938 exon18 c.2474_2476del p.825_826del . . 81 13 62 0 . 0 0 0 0 0 CMYA5 202333 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 79034426 79034426 + Frame_Shift_Del DEL G G - novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . CMYA5-77 NM_153610 exon2 c.9838delG p.G3280fs . . 144 25 110 0 . 0 0 0 0 0 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 109695056 109695056 + Frame_Shift_Del DEL G G - novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . RGAG1-132 NM_020769 exon3 c.1211delG p.R404fs . . 661 185 585 0 . 0 0 0 0 0 APOB 338 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 21224920 21224921 + Frame_Shift_Ins INS - - G novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . APOB-175 NM_000384 exon29 c.13374_13375insC p.P4458fs . . 117 33 87 0 . 0 0 0 0 0 SUPT20HL1 100130302 hgsc.bcm.edu 37 X 24382372 24382373 + Missense_Mutation DNP AT AT GC novel TCGA-A4-7828-01A-11D-2136-08 TCGA-A4-7828-10A-01D-2136-08 AT AT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 89b510b4-b46f-44f1-b973-0e7b01c3afd1 df0c98a4-c394-4d62-ac84-e6893a743883 . . exon1 c.T1496C . CTGCTATTGCTGC . 6.0 2.0 10.0 1.0 . 0 0 0 0 0