Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 SKI 6497 hgsc.bcm.edu 37 1 2160390 2160390 + Missense_Mutation SNP C C G rs28384811 TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SKI-838 NM_003036 exon1 c.C185G p.A62G TGCCGGCGCCGGT . 5 4 1 1 C|0.953;G|0.047 0 0 0 0 0 BAI2 576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 32207416 32207416 + Nonsense_Mutation SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . BAI2-526 NM_001703 exon9 c.G1570T p.E524X TCTTCTCACTACA . 110 17 109 0 . 0 0 0 0 0 BAI2 576 broad.mit.edu 37 1 32221746 32221746 + Missense_Mutation SNP G G C rs149675901 alternate_allele TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . BAI2-526 NM_001703 exon4 c.C692G p.A231G GAGCCGGCCCCCG . 58 17 62 15 G|1.000;A|0.000 2 2 0 0 0 TOE1 114034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 45808095 45808095 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TOE1-90 NM_025077 exon6 c.C532G p.L178V CTATTCCTGGAGC . 168 29 168 0 . 11 9 2 0 0 CCDC17 149483 broad.mit.edu 37 1 46086774 46086774 + Nonsense_Mutation SNP G G T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CCDC17-23 NM_001114938 exon11 c.C1400A p.S467X GATGATGAGGGTG . 38 5 38 0 . 0 0 0 0 0 LPHN2 23266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 82456455 82456455 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . LPHN2-525 NM_012302 exon20 c.C3838G p.L1280V TCCCTTCTGTACC . 165 44 142 0 . 73 34 39 0 0 C1orf51 148523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 150259000 150259000 + Silent SNP T T A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . C1orf51-90 NM_144697 exon5 c.T792A p.T264T CACCACTCCAATT . 183 35 161 0 . 20 15 5 0 0 CRTC2 200186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 153924520 153924520 + Missense_Mutation SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CRTC2-228 NM_181715 exon10 c.G971T p.G324V CCCAGGCCCATGC . 108 14 95 0 . 25 15 10 0 0 C1orf111 284680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 162344114 162344114 + Silent SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . C1orf111-69 NM_182581 exon3 c.A510G p.L170L AGCCATTAGGATG . 317 53 339 1 . 0 0 0 0 0 IVNS1ABP 10625 hgsc.bcm.edu 37 1 185278246 185278246 + Missense_Mutation SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . IVNS1ABP-94 NM_006469 exon4 c.T170C p.L57S TCAAATAAATAGG . 34 2 37 0 . 45 45 0 0 0 FAM5C 339479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 190067269 190067269 + Nonsense_Mutation SNP A A T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . FAM5C-228 NM_199051 exon8 c.T2180A p.L727X CGAAGCAAGCAAG . 129 14 146 0 . 0 0 0 0 0 PTPRC 5788 hgsc.bcm.edu;broad.mit.edu 37 1 198704382 198704382 + Splice_Site SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PTPRC-295 NM_080921 exon20 c.1920+1G>A . GTAAATGTGAGTT . 35 4 37 0 . 0 0 0 0 0 URB2 9816 broad.mit.edu 37 1 229771589 229771589 + Missense_Mutation SNP G G A rs139241970 TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . URB2-174 NM_014777 exon4 c.G1229A p.R410H GGTTCCGCTGTCT . 98 4 100 0 G|1.000;A|0.000 2 2 0 0 0 HTRA1 5654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 124273843 124273843 + Missense_Mutation SNP A A T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . HTRA1-90 NM_002775 exon9 c.A1411T p.I471F ATCATGATCACAG . 99 20 100 0 . 238 161 77 0 0 FAR1 84188 hgsc.bcm.edu 37 11 13743391 13743391 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . FAR1-92 NM_032228 exon10 c.C1242G p.N414K ACTAAACCCTGAA . 36 2 41 0 . 11 11 0 0 0 SCARNA12 677777 ucsc.edu;bcgsc.ca 37 12 7076752 7076752 + RNA SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . . . . . . ATTCGCCTTAGTC . 87 15 87 0 . 0 0 0 0 0 CNTN1 1272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 41327590 41327590 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CNTN1-1149 NM_001256063 exon9 c.A895C p.N299H ATCTTCAATATTC . 76 14 84 0 . 1 1 0 0 0 PDZRN4 29951 hgsc.bcm.edu 37 12 41582619 41582619 + Missense_Mutation SNP G G A rs74955204 TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PDZRN4-296 NM_001164595 exon1 c.G362A p.G121E CTTCGGGGCTGGG . 9 4 1 1 G|0.950;A|0.050 0 0 0 0 0 PLEKHA8P1 51054 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 45567881 45567881 + RNA SNP G G T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PLEKHA8P1-226 . . . . GAATTGGTATAAT . 90 21 107 0 . 4 3 1 0 0 KRT77 374454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53097170 53097170 + Silent SNP G G T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . KRT77-187 NM_175078 exon1 c.C49A p.R17R AAACCCGCCTGCT . 70 19 78 0 . 0 0 0 0 0 STAT6 6778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57499083 57499083 + Missense_Mutation SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . STAT6-849 NM_001178079 exon9 c.G852T p.K284N CTGAGTCTTCAGT . 105 18 99 1 . 91 59 32 0 0 GCN1L1 10985 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 120599294 120599294 + Silent SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . GCN1L1-94 NM_006836 exon22 c.G2436A p.E812E ACTCACCTCCTTC . 119 10 120 0 . 0 0 0 0 0 MYO16 23026 hgsc.bcm.edu 37 13 109793009 109793009 + Silent SNP C C T rs141423536 TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . MYO16-142 NM_001198950 exon32 c.C4449T p.H1483H GCTCCACCGCGCG . 6 4 3 1 C|0.974;T|0.026 0 0 0 0 0 NFKBIA 4792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 35871629 35871629 + Missense_Mutation SNP A A T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . NFKBIA-721 NM_020529 exon5 c.T877A p.S293T ACTCTGACTCTGT . 145 24 144 0 . 130 87 43 0 0 SLC39A9 55334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 69866098 69866098 + Silent SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SLC39A9-90 NM_001252150 exon1 c.C12T p.F4F TGATTTCATCTCC . 47 13 39 0 . 35 20 15 0 0 ATP10A 57194 broad.mit.edu 37 15 25953155 25953155 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ATP10A-139 NM_024490 exon12 c.C2543T p.A848V CGAATGGCAGACT . 50 3 66 0 . 2 2 0 0 0 SLC28A2 9153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 45561728 45561728 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SLC28A2-94 NM_004212 exon14 c.A1561C p.I521L CAGTGGATTTCTG . 37 6 38 0 . 0 0 0 0 0 MTFMT 123263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 65295424 65295424 + Silent SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . MTFMT-24 NM_139242 exon9 c.T1146G p.V382V CATAGCAACAGTT . 56 9 38 0 . 14 9 5 0 0 C15orf27 123591 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 76484312 76484312 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . C15orf27-90 NM_152335 exon9 c.G772A p.E258K CAGTTTGAGATCC . 49 9 43 0 . 0 0 0 0 0 ANPEP 290 broad.mit.edu 37 15 90349269 90349269 + Missense_Mutation SNP G G C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ANPEP-94 NM_001150 exon2 c.C546G p.F182L CCCCTCGAACTCG . 153 5 130 0 . 465 439 25 0 0 CIITA 4261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 10992818 10992818 + Missense_Mutation SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CIITA-226 NM_000246 exon5 c.T395C p.M132T AGAGTATGGAGAT . 137 15 141 0 . 11 11 0 0 0 ABCC11 85320 hgsc.bcm.edu;broad.mit.edu 37 16 48230229 48230229 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ABCC11-95 NM_033151 exon17 c.C2318T p.P773L TGCTCCGGCACTG . 52 3 39 0 . 0 0 0 0 0 IST1 9798 hgsc.bcm.edu;ucsc.edu 37 16 71956520 71956520 + Missense_Mutation SNP G G T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . . NM_001270976 exon8 c.G735T p.M245I GCCCATGCCCATG . 84 13 49 0 . 53 13 40 0 0 GAN 8139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 81411103 81411103 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . GAN-92 NM_022041 exon11 c.C1696T p.R566C GACCTTCGCCGTA . 359 54 261 0 . 2 2 0 0 0 HSDL1 83693 hgsc.bcm.edu;broad.mit.edu 37 16 84158328 84158328 + Silent SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . HSDL1-90 NM_031463 exon6 c.T900G p.L300L TGCAAAAAGAAAC . 63 11 57 0 . 1 1 0 0 0 NLE1 54475 broad.mit.edu 37 17 33464163 33464163 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . NLE1-290 NM_018096 exon7 c.C685T p.R229W AGATCCGCACACT . 57 3 63 0 . 9 9 0 0 0 KRT9 3857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 39726126 39726126 + Missense_Mutation SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . KRT9-92 NM_000226 exon3 c.G867T p.K289N ATTCTTCTTGAGG . 277 60 264 0 . 0 0 0 0 0 CDC27 996 hgsc.bcm.edu 37 17 45234298 45234298 + Missense_Mutation SNP G G A rs62077263 alternate_allele TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CDC27-291 NM_001114091 exon7 c.C823T p.L275F GACTAAGAGCTGC . 55 3 59 0 G|0.333;C|0.667 10 10 0 0 0 PPM1D 8493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 58740446 58740446 + Nonsense_Mutation SNP G G T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PPM1D-227 NM_003620 exon6 c.G1351T p.E451X TTTTTAGAGGTTT . 142 42 101 0 . 46 11 35 0 0 ABCA8 10351 hgsc.bcm.edu;bcgsc.ca 37 17 66928478 66928478 + Missense_Mutation SNP T T C rs149928780 TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ABCA8-93 NM_007168 exon6 c.A748G p.R250G TCATCCTTTTCCT . 76 5 47 0 T|1.000;C|0.000 1 1 0 0 0 ABCA5 23461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 67304486 67304486 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ABCA5-93 NM_018672 exon4 c.G493C p.A165P GAGCAGCCTCACA . 174 23 170 0 . 1 0 1 0 0 CCDC57 284001 hgsc.bcm.edu 37 17 80115741 80115741 + Silent SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CCDC57-24 NM_198082 exon14 c.G2124A p.E708E CCGCAGCTCCAAA . 18 6 7 1 . 4 0 4 0 0 PTPRS 5802 broad.mit.edu;bcgsc.ca 37 19 5231542 5231542 + Missense_Mutation SNP T T A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PTPRS-357 NM_002850 exon14 c.A1934T p.E645V TGCGTTTCCGGCG . 33 7 38 0 . 6 4 2 0 0 ZNF681 148213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 23926507 23926507 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . . NM_138286 exon4 c.G1845C p.E615D GAGTTTCTCACCA . 27 4 16 0 . 8 8 0 0 0 SUPT5H 6829 hgsc.bcm.edu 37 19 39960028 39960028 + Missense_Mutation SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SUPT5H-94 NM_003169 exon15 c.A1364G p.E455G AGCATGAGGACCT . 54 3 55 0 . 0 0 0 0 0 POU2F2 5452 hgsc.bcm.edu 37 19 42599440 42599440 + Missense_Mutation SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . POU2F2-227 NM_001207025 exon11 c.A1129G p.M377V GTACCATATGGGG . 33 2 20 0 . 0 0 0 0 0 TAF1B 9014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 10016047 10016047 + Missense_Mutation SNP G G C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TAF1B-92 NM_005680 exon7 c.G607C p.E203Q CGAAAGGAGAAGG . 200 40 210 0 . 36 19 17 0 0 CAD 790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 27460276 27460276 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CAD-295 NM_004341 exon28 c.G4426A p.E1476K CTGCGGGAACCAG . 120 20 119 0 . 19 11 8 0 0 TSGA10 80705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 99720473 99720473 + Nonsense_Mutation SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TSGA10-91 NM_182911 exon9 c.G568T p.E190X CACTTTCGGTATC . 113 12 86 0 . 2 1 1 0 0 DARS 1615 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 136736937 136736937 + Splice_Site SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . DARS-91 NM_001349 exon4 c.125-1G>T . CTCGATCTGTAAT . 124 25 93 0 . 0 0 0 0 0 THSD7B 80731 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 138169186 138169186 + Missense_Mutation SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . THSD7B-75 . . . . GAAAAGCAGAAAG . 108 15 91 0 . 0 0 0 0 0 KIF5C 3800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 149835496 149835496 + Nonsense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . KIF5C-69 NM_004522 exon13 c.C1354T p.Q452X TTGGATCAGGATG . 61 17 44 0 . 0 0 0 0 0 TTN 7273 bcgsc.ca 37 2 179449124 179449124 + Silent SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TTN-636 NM_001267550 exon311 c.A65154G p.E21718E AGGATATTCAGTT . 143 5 113 0 . 0 0 0 0 0 SESTD1 91404 bcgsc.ca 37 2 180041254 180041254 + Missense_Mutation SNP T T G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SESTD1-228 NM_178123 exon4 c.A176C p.K59T CTAGCCTTACACT . 68 4 47 0 . 0 0 0 0 0 USP37 57695 hgsc.bcm.edu;bcgsc.ca 37 2 219328058 219328058 + Missense_Mutation SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . USP37-661 NM_020935 exon22 c.T2498C p.L833P CTTTTGAGGTCAT . 87 5 99 0 . 0 0 0 0 0 PTPRN 5798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 220161767 220161767 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PTPRN-229 NM_002846 exon15 c.T2176G p.C726G TGGCACAGGTGTT . 75 21 80 0 . 0 0 0 0 0 COL6A3 1293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 238275884 238275884 + Missense_Mutation SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . COL6A3-526 NM_004369 exon11 c.A4946G p.N1649S CTGAAGTTGATGG . 52 9 60 0 . 10 10 0 0 0 SLC23A2 9962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 4855238 4855238 + Missense_Mutation SNP A A T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SLC23A2-92 NM_203327 exon10 c.T929A p.L310Q TTGAACAGCTGTA . 181 28 213 0 . 7 6 1 0 0 ATP9A 10079 hgsc.bcm.edu 37 20 50221537 50221537 + Silent SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ATP9A-94 NM_006045 exon27 c.G2826C p.A942A CAGCAGCGCCCCG . 30 2 34 0 . 10 10 0 0 0 ATP9A 10079 hgsc.bcm.edu 37 20 50224072 50224072 + Missense_Mutation SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ATP9A-94 NM_006045 exon26 c.T2797C p.Y933H CTTGATAGATGCT . 40 2 39 0 . 0 0 0 0 0 LAMA5 3911 broad.mit.edu 37 20 60901783 60901783 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . LAMA5-93 NM_005560 exon40 c.G5248A p.A1750T GGTATGCCGGCTC . 76 4 63 0 . 20 20 0 0 0 ITSN1 6453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 35239577 35239577 + Missense_Mutation SNP C C A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ITSN1-94 NM_003024 exon33 c.C4115A p.S1372Y CACTCTCTAGTTT . 102 21 119 1 . 2 2 0 0 0 MYO18B 84700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 26423002 26423002 + Silent SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . MYO18B-142 NM_032608 exon43 c.C7062G p.L2354L GTCCCTCTTAGAA . 200 48 185 0 . 0 0 0 0 0 PKDREJ 10343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 46653660 46653660 + Missense_Mutation SNP T T G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PKDREJ-156 NM_006071 exon1 c.A5560C p.N1854H ATCCATTGGTACT . 137 34 134 0 . 0 0 0 0 0 PPP6R2 9701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50878437 50878437 + Missense_Mutation SNP G G T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PPP6R2-92 NM_001242898 exon21 c.G2333T p.S778I AATGCAGCCATGC . 69 13 86 0 . 44 32 12 0 0 SETD5 55209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 9512542 9512542 + Silent SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SETD5-70 NM_001080517 exon19 c.T3124C p.L1042L GGATCCTTGTCAC . 25 4 24 0 . 7 4 3 0 0 CAPN7 23473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 15262464 15262464 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CAPN7-91 NM_014296 exon5 c.C614T p.T205I GATACACAGCAGA . 65 16 51 0 . 12 7 5 0 0 EXOSC7 23016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 45048921 45048921 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . EXOSC7-90 NM_015004 exon7 c.C625T p.R209W GGCTATCGGCATG . 31 10 57 0 . 0 0 0 0 0 TREX1 11277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48508760 48508760 + Missense_Mutation SNP A A T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TREX1-227 NM_016381 exon1 c.A871T p.T291S GGGGTCACAGCCT . 93 12 101 0 . 45 24 21 0 0 VPS8 23355 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 184700420 184700420 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . VPS8-91 NM_001009921 exon40 c.C3487T p.H1163Y ATTCCTCATCTAC . 71 13 65 0 . 11 3 8 0 0 IDUA 3425 hgsc.bcm.edu 37 4 980971 980971 + Missense_Mutation SNP T T G rs10794537 TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . IDUA-91 NM_000203 exon1 c.T99G p.H33Q GGTGCATGTGGAC . 3 3 1 1 T|0.175;G|0.825 5 0 5 0 0 ABCG2 9429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 89042889 89042889 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ABCG2-90 NM_004827 exon6 c.T587G p.I196R ATTCCTATACTAG . 75 13 70 0 . 4 4 0 0 0 KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 123156097 123156097 + Nonsense_Mutation SNP G G T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . KIAA1109-80 NM_015312 exon25 c.G3493T p.E1165X AGTGCAGAGTCTG . 107 25 102 0 . 5 4 1 0 0 FASTKD3 79072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 7867621 7867621 + Silent SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . FASTKD3-156 NM_024091 exon2 c.T576C p.P192P ACTTTGAGGATCC . 180 23 130 0 . 18 13 5 0 0 ADAMTS6 11174 hgsc.bcm.edu 37 5 64537954 64537954 + Missense_Mutation SNP T T G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ADAMTS6-226 NM_197941 exon15 c.A1910C p.Y637S CAGTTATAATACT . 79 4 67 0 . 0 0 0 0 0 SPATA9 83890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 94994451 94994451 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SPATA9-90 NM_031952 exon5 c.G641C p.R214T AATGACCTATAAG . 62 10 51 0 . 0 0 0 0 0 SLC36A2 153201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 150701645 150701645 + Missense_Mutation SNP A A T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SLC36A2-91 NM_181776 exon9 c.T1142A p.L381Q AGATCCAGAGGCA . 147 31 130 0 . 1 0 1 0 0 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 169463529 169463529 + Missense_Mutation SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . DOCK2-97 NM_004946 exon36 c.A3635G p.K1212R TCTACAAAGATAA . 85 23 74 0 . 0 0 0 0 0 NSD1 64324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 176696648 176696648 + Silent SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . NSD1-188 NM_022455 exon16 c.C5349T p.N1783N TTCCAACATTGAT . 89 14 73 0 . 6 3 3 0 0 FAM50B 26240 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 3850443 3850443 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . FAM50B-91 NM_012135 exon2 c.C398T p.A133V CCGACGCGGCCGA . 41 7 54 0 . 24 24 0 0 0 SLC35B3 51000 hgsc.bcm.edu 37 6 8413926 8413926 + Silent SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SLC35B3-90 NM_001142540 exon11 c.A1062G p.V354V AGACCATACATAC . 15 2 11 0 . 0 0 0 0 0 ATXN1 6310 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 6 16327407 16327407 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ATXN1-93 NM_001128164 exon7 c.C1135T p.R379W AGGCCCGGACCCC . 239 56 244 2 . 6 4 2 0 0 CLPS 1208 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 35765001 35765001 + Missense_Mutation SNP C C G rs140966197 byfrequency;alternate_allele TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CLPS-90 NM_001252598 exon1 c.G65C p.R22P ATCCCCCGGGGGC . 153 13 118 0 C|0.999;T|0.001 0 0 0 0 0 GLTSCR1L 23506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 42796705 42796705 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . . NM_015349 exon5 c.C634G p.Q212E TCTGGTCAAATAC . 221 35 215 0 . 5 2 3 0 0 MRPL2 51069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 43023646 43023646 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . MRPL2-90 NM_015950 exon5 c.T620G p.I207S GCTCGGATATATT . 41 10 44 0 . 1 1 0 0 0 SENP6 26054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 76412443 76412443 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SENP6-660 NM_015571 exon19 c.G2371A p.A791T GAAAATGCTGTCA . 62 11 58 0 . 21 14 7 0 0 SHPRH 257218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 146234630 146234630 + Missense_Mutation SNP C C G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SHPRH-92 NM_173082 exon24 c.G4322C p.R1441P AGCTGTCGAGCAC . 95 18 80 0 . 0 0 0 0 0 LPA 4018 broad.mit.edu;bcgsc.ca 37 6 161027563 161027563 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . LPA-74 NM_005577 exon18 c.G2731A p.V911I GCGCGACGGCAGT . 194 8 207 0 . 0 0 0 0 0 FAM188B 84182 hgsc.bcm.edu 37 7 30893077 30893077 + Splice_Site SNP T T C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . FAM188B-90 NM_032222 exon12 c.1677+2T>C . ATCAGGTATGAAG . 24 2 30 0 . 0 0 0 0 0 KIAA0895 23366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 36396613 36396613 + Silent SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . KIAA0895-90 NM_001100425 exon3 c.C765T p.F255F AGATTTGAAGAAT . 79 11 85 0 . 2 2 0 0 0 VPS41 27072 broad.mit.edu;bcgsc.ca 37 7 38783049 38783049 + Missense_Mutation SNP T T A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . VPS41-93 NM_014396 exon24 c.A2075T p.D692V TCTCCATCATCTT . 105 6 113 0 . 45 40 5 0 0 URGCP 55665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 43918082 43918082 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . URGCP-94 NM_001077663 exon6 c.T980G p.I327S GGGAAAATGTCCA . 109 24 76 0 . 18 9 9 0 0 ABCA13 154664 broad.mit.edu 37 7 48315672 48315672 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ABCA13-521 NM_152701 exon17 c.G6409A p.D2137N AATGAGGATTACT . 19 3 18 0 . 0 0 0 0 0 LIMK1 3984 bcgsc.ca 37 7 73535525 73535525 + Missense_Mutation SNP G G A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . LIMK1-523 NM_002314 exon16 c.G1838A p.G613D TGGCCGGCCACCT . 67 6 71 0 . 23 22 0 1 0 RELN 5649 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 103629656 103629656 + Missense_Mutation SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . RELN-574 NM_173054 exon1 c.G148A p.G50R GCTCCCCATCCCC . 112 20 90 0 . 0 0 0 0 0 CNOT4 4850 hgsc.bcm.edu;bcgsc.ca 37 7 135080545 135080545 + Missense_Mutation SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CNOT4-90 NM_001190850 exon9 c.T970C p.S324P AAGGGGACCGTGC . 58 4 57 1 . 27 27 0 0 0 KIAA1549 57670 broad.mit.edu;ucsc.edu 37 7 138602635 138602635 + Silent SNP C C T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . KIAA1549-369 NM_020910 exon2 c.G1737A p.P579P AAGCGACGGTGTG . 17 4 11 0 . 15 12 3 0 0 CHD7 55636 hgsc.bcm.edu 37 8 61761115 61761115 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CHD7-141 NM_017780 exon24 c.A5252C p.E1751A GACAAGAAGTGAT . 37 2 40 0 . 5 5 0 0 0 TRPA1 8989 hgsc.bcm.edu 37 8 72950286 72950286 + Missense_Mutation SNP A A C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TRPA1-230 NM_007332 exon20 c.T2317G p.C773G TCATACAAGTTTT . 26 2 13 0 . 0 0 0 0 0 HAS2 3037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 122641473 122641473 + Missense_Mutation SNP A A T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . HAS2-236 NM_005328 exon2 c.T108A p.F36L TTGGATAAACTGG . 90 16 95 0 . 1 1 0 0 0 ZBTB43 23099 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 129595385 129595385 + Silent SNP G G T rs34266321 byfrequency;alternate_allele TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ZBTB43-91 NM_001135776 exon2 c.G597T p.S199S CAACTCGTCCACA . 59 6 38 0 G|0.999;A|0.001 8 3 5 0 0 COL5A1 1289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 137734002 137734002 + Splice_Site SNP G G C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . COL5A1-524 NM_000093 exon66 c.5371-1G>C . TCCCCAGACCAAG . 100 12 82 0 . 0 0 0 0 0 MAGEB4 4115 hgsc.bcm.edu 37 X 30260477 30260477 + Missense_Mutation SNP G G C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . MAGEB4-131 NM_002367 exon1 c.G225C p.M75I AGCTATGTCATGC . 21 2 25 0 . 0 0 0 0 0 DACH2 117154 hgsc.bcm.edu 37 X 86087132 86087132 + Missense_Mutation SNP A A G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . DACH2-136 NM_053281 exon12 c.A1774G p.M592V TTAGAAATGGCAC . 33 2 26 0 . 0 0 0 0 0 ARHGEF6 9459 broad.mit.edu 37 X 135754263 135754263 + Missense_Mutation SNP G G C novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ARHGEF6-227 NM_004840 exon20 c.C2051G p.S684C GGAATGGAATCTT . 94 4 94 0 . 13 13 0 0 0 FMR1 2332 hgsc.bcm.edu;bcgsc.ca 37 X 147011651 147011651 + Missense_Mutation SNP T T A novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . FMR1-133 NM_002024 exon7 c.T518A p.I173N AGTCCATCAATGA . 47 4 69 0 . 0 0 0 0 0 PPRC1 23082 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 103898442 103898442 + Frame_Shift_Del DEL A A - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PPRC1-227 NM_015062 exon3 c.409delA p.N137fs . . 90 15 87 0 . 0 0 0 0 0 ARAP1 116985 broad.mit.edu 37 11 72399555 72399555 + Frame_Shift_Del DEL T T - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ARAP1-91 NM_001040118 exon31 c.4015delA p.I1339fs TCTTAATAGGCCA . 28 8 36 0 . 0 0 0 0 0 TECTA 7007 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 120980039 120980039 + Frame_Shift_Del DEL A A - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TECTA-225 NM_005422 exon3 c.318delA p.G106fs . . 76 19 72 0 . 0 0 0 0 0 CACNA1G 8913 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 48692731 48692732 + Frame_Shift_Del DEL GC GC - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . CACNA1G-67 NM_001256325 exon27 c.4790_4791del p.1597_1597del . . 75 13 50 0 . 0 0 0 0 0 TNRC6C 57690 broad.mit.edu 37 17 76046980 76046980 + Frame_Shift_Del DEL A A - rs71717398 TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . TNRC6C-24 NM_018996 exon4 c.1837delA p.K613fs GATGGGAAAAAAA . 169 5 110 0 . 0 0 0 0 0 GAA 2548 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 78085893 78085894 + Frame_Shift_Del DEL CC CC - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . GAA-91 NM_001079803 exon13 c.1748_1749del p.583_583del . . 107 20 108 0 . 0 0 0 0 0 LCT 3938 broad.mit.edu;bcgsc.ca 37 2 136566494 136566494 + Frame_Shift_Del DEL T T - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . LCT-101 NM_002299 exon8 c.3423delA p.E1141fs AGCGGCTTCCACA . 156 21 127 0 . 0 0 0 0 0 PCDH18 54510 broad.mit.edu;bcgsc.ca 37 4 138452043 138452043 + Frame_Shift_Del DEL A A - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PCDH18-185 NM_019035 exon1 c.1200delT p.H400fs ATGTCCATGAAGC . 87 13 79 0 . 0 0 0 0 0 SEC24A 10802 broad.mit.edu;bcgsc.ca 37 5 133997149 133997160 + In_Frame_Del DEL CTCACAAACAAA CTCACAAACAAA - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 CTCACAAACAAA CTCACAAACAAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SEC24A-68 NM_001252231 exon2 c.438_449del p.146_150del CACAGCCTCACAA . 101 12 106 0 . 0 0 0 0 0 STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + RNA DEL AGAGCTCC AGAGCTCC - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 AGAGCTCC AGAGCTCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . . . . . . CAGTGAAGAGCTC . 229 3 183 0 . 0 0 0 0 0 POLB 5423 broad.mit.edu;bcgsc.ca 37 8 42213041 42213041 + Frame_Shift_Del DEL A A - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . POLB-1084 NM_002690 exon7 c.378delA p.R126fs TCTCAGAAAAAAT . 81 9 86 0 . 0 0 0 0 0 SMC1A 8243 broad.mit.edu;bcgsc.ca 37 X 53442034 53442036 + In_Frame_Del DEL ATC ATC - novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 ATC ATC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . SMC1A-232 NM_006306 exon2 c.192_194del p.64_65del CCATGGATCAGGT . 27 8 28 0 . 0 0 0 0 0 ABCA13 154664 broad.mit.edu;bcgsc.ca 37 7 48317816 48317817 + Frame_Shift_Ins INS - - T novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . ABCA13-521 NM_152701 exon18 c.7025_7026insT p.S2342fs TGAAAAGTTCATT . 22 8 27 0 . 0 0 0 0 0 PTCHD1 139411 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 23411958 23411959 + Frame_Shift_Ins INS - - G novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . PTCHD1-135 NM_173495 exon3 c.2323_2324insG p.F775fs . . 44 19 55 0 . 0 0 0 0 0 BFSP1 631 hgsc.bcm.edu 37 20 17511868 17511869 + Missense_Mutation DNP GC GC AA novel TCGA-A4-7585-01A-11D-2136-08 TCGA-A4-7585-11A-01D-2136-08 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 62550e91-8d87-4feb-a763-bedc2e84cebe 2e2066d9-8dd8-4483-8bd9-67b26cbedc59 . BFSP1 exon1 c.G106T p.A36F CCCCAGCCCAGCC . 9.0 8.0 3.0 1.0 . 0 0 0 0 0