Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1248497	1248497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CPSF3L-90	NM_001256456	exon13	c.T1067C	p.M356T	CCGGGCATGATGA	.	31	12	37	0	.	7	4	3	0	0
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	2430213	2430213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PLCH2-229	NM_014638	exon18	c.A2380G	p.I794V	GAGATCATTGGGC	.	31	14	39	0	.	0	0	0	0	0
KIAA1522	57648	broad.mit.edu	37	1	33237860	33237860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KIAA1522-90	NM_020888	exon6	c.G3080A	p.R1027H	TGGCCCGCAAGCC	.	78	5	122	0	.	57	57	0	0	0
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34329977	34329977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	HMGB4-90	NM_145205	exon2	c.C185T	p.A62V	ATGAAGCCCTGGC	.	133	55	189	0	.	0	0	0	0	0
SFPQ	6421	broad.mit.edu	37	1	35658464	35658464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SFPQ-231	NM_005066	exon1	c.C187A	p.P63T	GAGGCGGTGGCGG	.	16	4	16	0	.	24	7	17	0	0
SSBP3	23648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	54870254	54870254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SSBP3-90	NM_001009955	exon3	c.G186A	p.W62X	CCACCACCACGAG	.	68	19	149	0	.	0	0	0	0	0
SLC9C2	284525	ucsc.edu	37	1	173490537	173490537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_178527	exon22	c.A2642G	p.E881G	GCTCTTTCCTGAG	.	39	4	48	0	.	0	0	0	0	0
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183944269	183944269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_015101	exon3	c.C454G	p.L152V	TTCGAAGGGCTGC	.	99	35	150	0	.	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186083139	186083139	+	Silent	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	HMCN1-113	NM_031935	exon73	c.G11160A	p.Q3720Q	CCCCCAGAGCCTT	.	208	69	278	0	.	0	0	0	0	0
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5139704	5139704	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	AKR1C3-515	NM_001253908	exon3	c.G331C	p.V111L	GACTATGTTGACC	.	89	40	96	0	.	80	31	49	0	0
TACR2	6865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71175766	71175766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	TACR2-522	NM_001057	exon1	c.T314A	p.F105Y	TAGCAGAAGGCAC	.	43	19	53	0	.	0	0	0	0	0
MRPL17	63875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6703594	6703594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MRPL17-90	NM_022061	exon3	c.C283T	p.P95S	ACCGAGGGGCCAG	.	141	48	197	0	.	73	42	31	0	0
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30902745	30902745	+	Silent	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DCDC5-23	NM_020869	exon18	c.C2505A	p.V835V	ACAGATGACCATA	.	56	25	61	0	.	1	1	0	0	0
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102987369	102987369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DYNC2H1-68	NM_001377	exon5	c.T692C	p.V231A	ATGTTGTAGATGA	.	127	56	180	1	.	2	2	0	0	0
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111749725	111749725	+	Silent	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FDXACB1-22	NM_138378	exon1	c.T132C	p.D44D	CAGTGGATCCCGA	.	25	11	28	0	.	3	2	1	0	0
DDX12P	440081	ucsc.edu	37	12	9578131	9578131	+	RNA	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	.	.	.	.	GCCTTCGATGTGC	.	62	2	69	0	.	5	5	0	0	0
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14772233	14772233	+	Silent	SNP	A	A	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GUCY2C-338	NM_004963	exon24	c.T2787G	p.A929A	TCCAGCAGCACAG	.	91	29	82	0	.	16	6	10	0	0
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41316146	41316146	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CNTN1-1149	NM_001256063	exon5	c.C316T	p.Q106X	GACAAACAGAAAG	.	84	38	69	0	.	0	0	0	0	0
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57975209	57975209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KIF5A-517	NM_004984	exon25	c.C2767T	p.R923W	CCCGTCCGGCCTG	.	125	50	150	0	.	0	0	0	0	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	78604234	78604234	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	NAV3-279	NM_014903	exon39	c.C7029T	p.C2343C	AAGCTGCGACAGC	.	71	26	59	0	.	0	0	0	0	0
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105527569	105527569	+	Silent	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KIAA1033-91	NM_015275	exon14	c.C1221G	p.V407V	CTACGTCTTTGTG	.	119	29	139	1	.	16	9	7	0	0
KCTD4	386618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	45768535	45768535	+	Silent	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KCTD4-90	NM_198404	exon2	c.C168T	p.D56D	GAAAGTGTCTGGG	.	182	55	288	0	.	0	0	0	0	0
NEMF	9147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50256253	50256253	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	NEMF-90	NM_004713	exon27	c.G2658A	p.Q886Q	TTCATCCTGGTCT	.	63	17	89	0	.	13	6	7	0	0
VRK1	7443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	97321567	97321567	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	VRK1-358	NM_003384	exon8	c.T583A	p.L195M	GTGTACTTGGTAG	.	105	46	134	0	.	0	0	0	0	0
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64791991	64791991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF609-92	NM_015042	exon1	c.T373C	p.S125P	GGGCGCTCAGGAG	.	62	18	54	0	.	7	4	3	0	0
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1505793	1505793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CLCN7-92	NM_001287	exon11	c.G920A	p.G307E	AGGACCCCACCTG	.	73	43	63	0	.	0	0	0	0	0
TEKT5	146279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	10721483	10721483	+	Missense_Mutation	SNP	C	C	T	rs200414450		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	TEKT5-92	NM_144674	exon7	c.G1415A	p.R472H	GTCTTACGCATGC	.	128	11	118	0	C|0.999;T|0.000	0	0	0	0	0
EEF2K	29904	ucsc.edu	37	16	22295229	22295229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EEF2K-856	NM_013302	exon18	c.C2090T	p.A697V	AGGCAGCAGAGGC	.	10	2	33	0	.	7	6	1	0	0
CIAPIN1	57019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57463170	57463170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CIAPIN1-90	NM_020313	exon9	c.G851A	p.R284H	GCACAGCGGAAGG	.	73	38	83	0	.	121	49	71	1	0
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7727461	7727461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DNAH2-102	NM_020877	exon75	c.G11501A	p.R3834Q	CCCCACGATCCCC	.	205	26	180	0	.	0	0	0	0	0
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28407885	28407885	+	Silent	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EFCAB5-70	NM_198529	exon17	c.G3312C	p.L1104L	ATTCCTGGCTCTG	.	63	24	82	0	.	0	0	0	0	0
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65214853	65214853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	HELZ-92	NM_014877	exon4	c.A68C	p.E23A	GCCATTTCATAGT	.	142	34	120	0	.	5	5	0	0	0
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71199203	71199203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	COG1-91	NM_018714	exon8	c.C2138A	p.A713D	CCACAGCCACCAG	.	87	58	83	0	.	39	8	31	0	0
FDXR	2232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72861043	72861043	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FDXR-226	NM_001258012	exon7	c.T749G	p.I250S	TTCGTGATGTCCG	.	102	54	80	0	.	1	0	1	0	0
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2913257	2913257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EMILIN2-93	NM_032048	exon8	c.G3017T	p.G1006V	GCCCGGGGGCATT	.	49	13	76	0	.	4	2	2	0	0
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	30926327	30926327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_001105528	exon8	c.A506G	p.E169G	ATGGCCTCTGAGA	.	83	26	79	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9059472	9059472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MUC16-566	NM_024690	exon3	c.C27974A	p.A9325D	GAGATGGCTTCTG	.	143	69	199	0	.	0	0	0	0	0
ZNF317	57693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9271676	9271676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF317-90	NM_020933	exon7	c.G1355A	p.G452E	TCTGCGGGAAAGC	.	58	20	67	0	.	6	3	3	0	0
C19orf57	79173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13996869	13996869	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	C19orf57-93	NM_024323	exon8	c.1669-1G>C	.	AAAGAGCTGGAAA	.	58	21	58	0	.	0	0	0	0	0
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35828752	35828752	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CD22-526	NM_001185100	exon5	c.C813T	p.N271N	CAGCAACCCGGAG	.	77	32	107	0	.	1	1	0	0	0
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50161552	50161552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SCAF1-68	NM_021228	exon11	c.A3835C	p.K1279Q	TTCCGCAAGCACG	.	20	10	28	0	.	34	18	16	0	0
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55144006	55144006	+	Silent	SNP	C	C	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	LILRB1-137	NM_001081637	exon6	c.C753A	p.G251G	TGCTGGCTACAAC	.	110	44	173	0	.	2	2	0	0	0
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57839968	57839968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF543-92	NM_213598	exon4	c.G1138A	p.A380T	GAGAGTGCAGACC	.	83	35	119	0	.	1	0	1	0	0
PROM2	150696	hgsc.bcm.edu	37	2	95952306	95952306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PROM2-91	NM_001165977	exon17	c.A2027G	p.Q676R	TCCCCCAGCAGAG	.	55	3	86	0	.	0	0	0	0	0
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109109239	109109239	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GCC2-91	NM_181453	exon19	c.C4440T	p.T1480T	ACCGACCACAAGA	.	45	21	73	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179611391	179611391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	TTN-636	NM_133379	exon46	c.C15736G	p.Q5246E	CTTTTTGAATGTT	.	92	40	63	0	.	0	0	0	0	0
RAPH1	65059	broad.mit.edu	37	2	204305768	204305768	+	Silent	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	RAPH1-1151	NM_213589	exon14	c.T2145C	p.P715P	TGGAGGAGGGGGA	.	58	12	72	4	.	0	0	0	0	0
GPR1	2825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207040930	207040930	+	Silent	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GPR1-90	NM_001098199	exon3	c.C1042T	p.L348L	GACACAGATTCTT	.	46	17	63	0	.	0	0	0	0	0
RBM44	375316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238722326	238722326	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	RBM44-26	NM_001080504	exon2	c.76+1G>T	.	AAAAAGGTAAGGG	.	31	16	51	0	.	0	0	0	0	0
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34021936	34021936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GDF5-226	NM_000557	exon2	c.C1277A	p.A426D	TGGAAAGCCTCGT	.	72	27	89	1	.	3	3	0	0	0
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44578919	44578919	+	Silent	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF335-94	NM_022095	exon22	c.C3426G	p.T1142T	GGTCTGGGTAGGG	.	97	30	133	0	.	13	8	5	0	0
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49366295	49366295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PARD6B-91	NM_032521	exon3	c.A389G	p.H130R	AGCCACATATAGT	.	48	16	77	0	.	15	5	10	0	0
BAGE	574	hgsc.bcm.edu	37	21	11097541	11097541	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_001187	exon3	c.119+2G>T	.	ACGAAACTCACAG	.	31	3	37	1	.	0	0	0	0	0
GAL3ST1	9514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30951203	30951203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GAL3ST1-90	NM_004861	exon4	c.G1009C	p.A337P	CGTTGGCATGGCG	.	25	13	23	0	.	13	5	8	0	0
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37914027	37914027	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CARD10-662	NM_014550	exon2	c.C324G	p.F108L	CAGCGTGAAGTGT	.	60	13	93	0	.	32	14	18	0	0
GORASP1	64689	hgsc.bcm.edu	37	3	39148980	39148980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GORASP1-92	NM_031899	exon1	c.A53G	p.H18R	TGGAGGTGGAAGC	.	11	3	9	0	.	0	0	0	0	0
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51697207	51697207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	RAD54L2-93	NM_015106	exon22	c.C4175G	p.S1392C	TCCTGTCCGAGCC	.	123	48	183	0	.	4	3	1	0	0
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69928532	69928532	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MITF-524	NM_198159	exon2	c.A352T	p.K118X	GTCCTTAAGGTAC	.	35	19	35	0	.	0	0	0	0	0
NXPE3	91775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101520832	101520832	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_145037	exon5	c.A847T	p.S283C	TTCCAGAGGTATG	.	174	65	233	0	.	2	1	1	0	0
AP2M1	1173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183898969	183898969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	AP2M1-90	NM_001025205	exon6	c.T656C	p.V219A	AGATTGTTATTGA	.	197	87	257	0	.	243	121	121	0	1
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54266007	54266007	+	Splice_Site	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FIP1L1-1083	NM_001134938	exon8	c.701+1G>C	.	GAGCAGGTTAGTT	.	76	31	142	0	.	7	0	7	0	0
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155465648	155465648	+	Silent	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PLRG1-90	NM_002669	exon7	c.A543G	p.K181K	AGGGGCTTTTTTA	.	66	25	97	0	.	34	15	19	0	0
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95761622	95761622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PCSK1-92	NM_000439	exon3	c.G298C	p.E100Q	GTTGTTCAGCCCA	.	40	16	50	0	.	0	0	0	0	0
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156590018	156590018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FAM71B-96	NM_130899	exon2	c.C1258G	p.P420A	CACTGGGCTGGGA	.	113	54	137	0	.	0	0	0	0	0
C6orf136	221545	broad.mit.edu	37	6	30615105	30615105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	C6orf136-90	NM_001161376	exon1	c.A97G	p.R33G	GGAGGGAGGAGAG	.	33	8	44	0	.	0	0	0	0	0
BAK1	578	hgsc.bcm.edu;broad.mit.edu	37	6	33543199	33543199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	BAK1-638	NM_001188	exon4	c.C226T	p.R76W	GCTGCCGTCCCAC	.	88	5	109	1	.	14	14	0	0	0
DDO	8528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110734538	110734538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DDO-155	NM_004032	exon2	c.C212T	p.T71I	TCACTGGTGGTAT	.	125	53	207	0	.	16	12	4	0	0
AHI1	54806	broad.mit.edu	37	6	135784313	135784313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	AHI1-227	NM_001134832	exon7	c.A881G	p.Q294R	TCATCTTGCATGC	.	49	3	55	0	.	4	4	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152631610	152631610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SYNE1-607	NM_182961	exon89	c.C16940T	p.A5647V	TCCAAGGCAGCTT	.	50	19	86	0	.	4	2	2	0	0
CYP2W1	54905	hgsc.bcm.edu	37	7	1024913	1024913	+	Missense_Mutation	SNP	G	G	C	rs143596553		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CYP2W1-90	NM_017781	exon4	c.G599C	p.G200A	TGCTGGGTCTCAT	.	6	3	3	1	G|1.000;C|0.000	3	1	2	0	0
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5568977	5568977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ACTB-226	NM_001101	exon3	c.A178G	p.S60G	TCTTGCTCTGGGC	.	178	97	181	0	.	2053	725	1328	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82584714	82584714	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PCLO-29	NM_014510	exon5	c.A5555T	p.H1852L	GATCTATGGAGCT	.	202	67	159	0	.	1	1	0	0	0
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134871027	134871027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	WDR91-137	NM_014149	exon15	c.T2120A	p.L707Q	CCACCTAGGCTCA	.	69	36	50	0	.	159	59	100	0	0
ZC2HC1A	51101	hgsc.bcm.edu	37	8	79578395	79578395	+	Silent	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_016010	exon1	c.G12C	p.L4L	GGGACTGGAAGGT	.	10	6	2	0	.	0	0	0	0	0
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	132968018	132968018	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EFR3A-139	NM_015137	exon7	c.C642T	p.R214R	TAGTCGCATAGGC	.	86	26	112	0	.	0	0	0	0	0
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132623219	132623219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	USP20-658	NM_001008563	exon7	c.T334C	p.S112P	CAGGACTCCCCGC	.	219	72	394	1	.	0	0	0	0	0
MPP1	4354	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154033610	154033610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MPP1-132	NM_001166461	exon1	c.C39A	p.S13R	GTGCATGCTGCCC	.	7	7	18	0	.	9	1	8	0	0
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	12483592	12483592	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MANSC1-90	NM_018050	exon4	c.665delA	p.N222fs	.	.	109	37	107	0	.	0	0	0	0	0
ABCB9	23457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123429030	123429030	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ABCB9-90	NM_019625	exon7	c.1288delT	p.Y430fs	.	.	180	58	210	0	.	0	0	0	0	0
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	45453182	45453182	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DUOX1-142	NM_017434	exon30	c.3850delC	p.P1284fs	.	.	61	22	67	0	.	0	0	0	0	0
EXOC3L2	90332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45720794	45720794	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EXOC3L2-91	NM_138568	exon8	c.811delC	p.R271fs	.	.	19	10	28	0	.	0	0	0	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44870257	44870257	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KDM6A-2748	NM_021140	exon5	c.436delT	p.F146fs	.	.	20	13	35	0	.	0	0	0	0	0
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145497429	145497430	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	LIX1L-91	NM_153713	exon4	c.634_635insT	p.I212fs	.	.	44	15	58	0	.	0	0	0	0	0
RMDN3	55177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41037304	41037305	+	Frame_Shift_Ins	INS	-	-	GCACT	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_018145	exon5	c.678_679insAGTGC	p.A226fs	.	.	61	16	114	0	.	0	0	0	0	0
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39622089	39622090	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KRT32-90	NM_002278	exon3	c.644_645insG	p.D215fs	.	.	146	85	120	0	.	0	0	0	0	0
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	73752854	73752855	+	In_Frame_Ins	INS	-	-	GCTGCA	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ITGB4-227	NM_000213	exon37	c.4967_4968insGCTGCA	p.S1656delinsSLQ	.	.	143	43	168	0	.	0	0	0	0	0
BAI3	577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	69666026	69666027	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	BAI3-1148	NM_001704	exon7	c.1306_1307insA	p.E436fs	.	.	53	22	37	0	.	0	0	0	0	0
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45456067	45456068	+	Missense_Mutation	DNP	GT	GT	TA	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DUOX1		exon34	c.T4485A	p.R1495L	TGGCCGTCCCCCC	.	134.0	58.0	213.0	0.0	.	0	0	0	0	0
ANKMY2	57037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	16650259	16650260	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ANKMY2		exon6	c.G660A	p.MK220IE	CATCTTCATAGCC	.	73.0	34.0	96.0	0.0	.	0	0	0	0	0
SS18	6760	broad.mit.edu	37	18	23670482	23670483	+	Missense_Mutation	DNP	GA	GA	AG	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SS18-1968	NM_001007559	exon1	c.T51C	p.P21S	AGCGGGAGTGATC	.	10	4	9	0	.	0	0	0	0	0