Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AHNAK2 113146 hgsc.bcm.edu;ucsc.edu 37 14 105412554 105412554 + Silent SNP T T G rs12436986 bycluster;byhapmap;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 AVIL 10677 hgsc.bcm.edu 37 12 58207097 58207097 + Missense_Mutation SNP T T A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 BPIL3 0 hgsc.bcm.edu;ucsc.edu 37 20 31627270 31627270 + Missense_Mutation SNP A A C novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 C15orf40 123207 hgsc.bcm.edu 37 15 83677270 83677271 + Frame_Shift_Ins INS - - A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 CCM2 83605 hgsc.bcm.edu;ucsc.edu 37 7 45067353 45067353 + Missense_Mutation SNP T T G novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 CDK11B 984 hgsc.bcm.edu;ucsc.edu 37 1 1647893 1647894 + In_Frame_Ins INS - - TTTCTT novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 CNTN6 27255 hgsc.bcm.edu;ucsc.edu 37 3 1269542 1269542 + Missense_Mutation SNP T T C novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 CUL3 8452 hgsc.bcm.edu 37 2 225422498 225422498 + Missense_Mutation SNP T T A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 DEM1 0 hgsc.bcm.edu 37 1 40981245 40981246 + Frame_Shift_Ins INS - - G novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 DICER1 23405 hgsc.bcm.edu 37 14 95597894 95597894 + Missense_Mutation SNP A A T novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 ENAH 55740 hgsc.bcm.edu 37 1 225707051 225707051 + Missense_Mutation SNP C C A rs140432837 byfrequency;alternate_allele TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 FAM21C 253725 hgsc.bcm.edu 37 10 46254776 46254776 + Missense_Mutation SNP A A C rs2596979 bycluster;byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 FANCD2 2177 hgsc.bcm.edu 37 3 10088404 10088404 + Silent SNP C C T rs141958850 byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 ITGB5 3693 hgsc.bcm.edu;ucsc.edu 37 3 124482495 124482503 + In_Frame_Del DEL TTGTTGAAC TTGTTGAAC - rs150512726 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TTGTTGAAC TTGTTGAAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 KAT2B 8850 hgsc.bcm.edu;ucsc.edu 37 3 20113852 20113853 + Frame_Shift_Ins INS - - G novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 KIF4B 285643 hgsc.bcm.edu 37 5 154393562 154393562 + Missense_Mutation SNP C C T novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 KRT4 3851 hgsc.bcm.edu 37 12 53207606 53207606 + Silent SNP G G A rs79164931 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 LMOD3 56203 hgsc.bcm.edu;ucsc.edu 37 3 69169051 69169056 + In_Frame_Del DEL TCTTCT TCTTCT - novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TCTTCT TCTTCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 MAGEC1 9947 hgsc.bcm.edu 37 X 140995291 140995291 + Missense_Mutation SNP G G A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 MUC4 4585 hgsc.bcm.edu 37 3 195513772 195513772 + Missense_Mutation SNP G G A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 NBPF9 400818 hgsc.bcm.edu 37 1 144618201 144618201 + Silent SNP T T C rs61809737 byfrequency;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 NOXA1 10811 hgsc.bcm.edu;ucsc.edu 37 9 140320783 140320783 + Splice_Site SNP G G A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 OR4C45 403257 hgsc.bcm.edu 37 11 48367136 48367136 + Missense_Mutation SNP C C T rs78927905 bycluster;byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 OR5H6 79295 hgsc.bcm.edu;ucsc.edu 37 3 97983488 97983496 + In_Frame_Del DEL TGTAACCAC TGTAACCAC - rs139831483 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TGTAACCAC TGTAACCAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PABPC3 5042 hgsc.bcm.edu 37 13 25671206 25671206 + Silent SNP A A G rs76614854 TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PABPC3 5042 hgsc.bcm.edu 37 13 25671742 25671742 + Missense_Mutation SNP G G A rs140135080 byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PALB2 79728 hgsc.bcm.edu 37 16 23647298 23647298 + Missense_Mutation SNP G G A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PCNT 5116 hgsc.bcm.edu 37 21 47754449 47754449 + Missense_Mutation SNP G G A rs59183158 TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PCNT 5116 hgsc.bcm.edu 37 21 47754563 47754563 + Missense_Mutation SNP A A G rs61735822 bycluster;byfrequency;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PIWIL3 440822 hgsc.bcm.edu;ucsc.edu 37 22 25155858 25155869 + In_Frame_Del DEL TGCTCCTCCTCT TGCTCCTCCTCT - novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TGCTCCTCCTCT TGCTCCTCCTCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PLEKHA3 65977 hgsc.bcm.edu;ucsc.edu 37 2 179368497 179368497 + Silent SNP C C T rs139167699 TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 PRSS16 10279 hgsc.bcm.edu;ucsc.edu 37 6 27223065 27223079 + In_Frame_Del DEL AAGGAGAGCCAGATT AAGGAGAGCCAGATT - rs141138864 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 AAGGAGAGCCAGATT AAGGAGAGCCAGATT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 RFX5 5993 hgsc.bcm.edu 37 1 151317012 151317012 + Silent SNP C C A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 RP1L1 94137 hgsc.bcm.edu 37 8 10467571 10467571 + Missense_Mutation SNP C C T novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 RP1L1 94137 hgsc.bcm.edu 37 8 10467579 10467581 + In_Frame_Del DEL TTC TTC - rs143686100 by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TTC TTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 RP1L1 94137 hgsc.bcm.edu 37 8 10467636 10467636 + Silent SNP T T C rs4840500 TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 RP1L1 94137 hgsc.bcm.edu;ucsc.edu 37 8 10465965 10465965 + Silent SNP T T C rs112534810 TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 RPGR 6103 hgsc.bcm.edu;ucsc.edu 37 X 38144799 38144799 + Missense_Mutation SNP C C A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 SBDS 51119 hgsc.bcm.edu;ucsc.edu 37 7 66453385 66453385 + Silent SNP T T C novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 SBF2 81846 hgsc.bcm.edu 37 11 9875241 9875241 + Silent SNP A A C novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 SLC16A9 220963 hgsc.bcm.edu 37 10 61412636 61412653 + In_Frame_Del DEL CCTCCCAGCAGGACGCAG CCTCCCAGCAGGACGCAG - novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 CCTCCCAGCAGGACGCAG CCTCCCAGCAGGACGCAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 SLC25A5 292 hgsc.bcm.edu;ucsc.edu 37 X 118603864 118603864 + Missense_Mutation SNP G G A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 SYN3 8224 hgsc.bcm.edu;ucsc.edu 37 22 32934079 32934079 + Missense_Mutation SNP C C A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 TSPAN8 7103 hgsc.bcm.edu 37 12 71526584 71526584 + Silent SNP G G A novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 UBR5 51366 hgsc.bcm.edu 37 8 103274282 103274282 + Missense_Mutation SNP A A T novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 WDR69 164781 hgsc.bcm.edu 37 2 228754594 228754594 + Nonsense_Mutation SNP G G T novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809 ZNF141 7700 hgsc.bcm.edu 37 4 367267 367267 + Silent SNP T T C novel TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84a62ab5-e442-4358-9d24-572cdf7eb44e d20fbb8f-5cd8-4dba-9d7e-8840569b2809