Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAM6 8755 broad.mit.edu 37 14 106237611 106237611 + RNA SNP C T T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 AGXT2L1 64850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109667938 109667938 + Silent SNP T T C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 ANUBL1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 46121526 46121526 + Missense_Mutation SNP A A G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 ATG7 10533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 11389435 11389435 + Nonsense_Mutation SNP G G T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 C10orf79 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105953637 105953637 + Missense_Mutation SNP C C T rs145913363 by1000genomes TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 C1orf112 55732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169822055 169822055 + Nonsense_Mutation SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 CA7 766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66887326 66887326 + Silent SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 CD5L 922 broad.mit.edu 37 1 157805891 157805891 + Missense_Mutation SNP A C C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 CHD5 26038 broad.mit.edu;ucsc.edu 37 1 6208965 6208965 + Missense_Mutation SNP G T T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 CHRNB2 1141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154543879 154543879 + Missense_Mutation SNP C C A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 CRYGS 1427 broad.mit.edu;ucsc.edu 37 3 186262113 186262113 + Missense_Mutation SNP C T T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 ELFN2 114794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37769171 37769171 + Nonsense_Mutation SNP C C A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FAM179B 23116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45432114 45432114 + Missense_Mutation SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FAM40A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110582061 110582061 + Missense_Mutation SNP A A T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FBXO42 54455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16583146 16583146 + Missense_Mutation SNP T T G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FER1L6 654463 broad.mit.edu;hgsc.bcm.edu 37 8 125035809 125035809 + Silent SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FGFR1 2260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38282176 38282176 + Missense_Mutation SNP C C A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FGFR2 2263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123298145 123298145 + Missense_Mutation SNP A A G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FGFR2 2263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123298147 123298147 + Missense_Mutation SNP T T G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FRMPD4 9758 hgsc.bcm.edu;ucsc.edu 37 X 12736252 12736253 + Frame_Shift_Ins INS - - A rs35659462 TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 FZD3 7976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28385020 28385020 + Missense_Mutation SNP T T C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 HDAC4 9759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 240111615 240111615 + Missense_Mutation SNP G G C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 HYAL4 23553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123517205 123517205 + Missense_Mutation SNP T T C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 HYAL4 23553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123517206 123517206 + Missense_Mutation SNP G G T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 IBTK 25998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 82950105 82950105 + Silent SNP A A T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 IBTK 25998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 82950107 82950107 + Missense_Mutation SNP T T C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 INPP5D 3635 broad.mit.edu 37 2 234113207 234113207 + Frame_Shift_Del DEL G - - novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 KCNH8 131096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 19436689 19436689 + Missense_Mutation SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 KIAA0182 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 85701801 85701801 + Silent SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 KIAA1797 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 20874780 20874780 + Missense_Mutation SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 KIF3B 9371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30897808 30897808 + Silent SNP G G C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 LCMT2 9836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43621613 43621613 + Missense_Mutation SNP C C A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 LOC96610 96610 broad.mit.edu 37 22 22664606 22664606 + RNA SNP A G G rs187344612 TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 LTBP2 4053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74967715 74967715 + Missense_Mutation SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 LY75-CD302 100526664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160667078 160667078 + Missense_Mutation SNP A A G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 MAGEB3 4114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 30254882 30254882 + Missense_Mutation SNP G G C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 MAPK3 5595 broad.mit.edu;ucsc.edu 37 16 30133218 30133218 + Missense_Mutation SNP G A A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 MCM7 4176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99693535 99693535 + Missense_Mutation SNP G G T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 MLANA 2315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5897599 5897599 + Silent SNP A A G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 MLANA 2315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5897600 5897600 + Missense_Mutation SNP C C A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 MLH3 27030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75513898 75513898 + Missense_Mutation SNP C C A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 NEURL 9148 broad.mit.edu 37 10 105344764 105344764 + Missense_Mutation SNP C A A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 NOX3 50508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155743887 155743887 + Missense_Mutation SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 NR5A2 2494 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200014591 200014591 + Silent SNP C C A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 NRP2 8828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 206640998 206640998 + Silent SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176631295 176631295 + Splice_Site SNP T T C novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PCDH18 54510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 138450943 138450943 + Missense_Mutation SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PCDHB13 56123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140594887 140594887 + Nonsense_Mutation SNP G G T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PIK3C2G 5288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 18435099 18435099 + Missense_Mutation SNP T T G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PLCB3 5331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64028903 64028903 + Missense_Mutation SNP A A T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 POLQ 10721 broad.mit.edu;ucsc.edu 37 3 121208173 121208173 + Missense_Mutation SNP T G G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PPP1R16A 84988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145724303 145724303 + Missense_Mutation SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PRPF38B 55119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109238748 109238748 + Missense_Mutation SNP G G T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PRPF38B 55119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109238749 109238749 + Nonsense_Mutation SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 PZP 5858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9344841 9344841 + Silent SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 RAB24 53917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176729440 176729440 + Missense_Mutation SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 RASA2 5922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141278763 141278763 + Silent SNP A A G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 RNH1 6050 broad.mit.edu 37 11 498772 498772 + Missense_Mutation SNP C A A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 RXFP1 59350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159549854 159549854 + Missense_Mutation SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 SIK3 23387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 116746997 116746997 + Missense_Mutation SNP A A G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 SUPT5H 6829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39955501 39955501 + Missense_Mutation SNP T T A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 TACC3 10460 hgsc.bcm.edu 37 4 1729795 1729795 + Silent SNP A A G novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 TLK1 9874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 171902831 171902831 + Missense_Mutation SNP C C T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 TMPRSS3 64699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 43803192 43803192 + Silent SNP G G A novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 Unknown 0 broad.mit.edu 37 2 95552625 95552625 + RNA SNP C T T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C T T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 WHAMML1 0 broad.mit.edu 37 15 23205108 23205108 + RNA SNP C T T novel TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 ZCCHC3 85364 broad.mit.edu 37 20 278688 278690 + In_Frame_Del DEL CGG - - rs5839847 bycluster;by1000genomes TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 CGG CGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 ZNF710 374655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90616473 90616473 + Silent SNP C C G rs146964408 byfrequency;alternate_allele TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877 VHL 7428 hgsc.bcm.edu 37 3 10183859 10183859 + Missense_Mutation SNP C C T rs17855706 TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM . . Illumina HiSeq a47debc7-700e-4c64-a9b3-1113609a1ddf 7ab7544e-efbe-4520-a5ad-1bb251253877