Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTS13 11093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136291396 136291396 + Frame_Shift_Del DEL G G - novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 AKT1 207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105246482 105246482 + Missense_Mutation SNP C C T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 ANAPC1 64682 hgsc.bcm.edu 37 2 112536274 112536274 + Frame_Shift_Del DEL G G - novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 APPL2 55198 broad.mit.edu;hgsc.bcm.edu 37 12 105582196 105582196 + Missense_Mutation SNP G G A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 ART1 417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3681532 3681532 + Silent SNP C C T rs139469651 TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 ASH2L 9070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 37974168 37974168 + Missense_Mutation SNP G G T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 ASTL 431705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96789912 96789912 + Missense_Mutation SNP G G T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 B2M 567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45007701 45007701 + Frame_Shift_Del DEL T T - novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 B2M 567 hgsc.bcm.edu 37 15 45007705 45007705 + Missense_Mutation SNP A A C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 BAG4 9530 broad.mit.edu 37 8 38034599 38034599 + Missense_Mutation SNP G A A novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 BDP1 55814 broad.mit.edu;ucsc.edu 37 5 70840940 70840940 + Missense_Mutation SNP G T T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 C22orf36 0 hgsc.bcm.edu;ucsc.edu 37 22 24984203 24984204 + In_Frame_Ins INS - - GCA novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 C9orf16 79095 hgsc.bcm.edu 37 9 130925841 130925841 + Missense_Mutation SNP C C T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 CD55 1604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207495818 207495818 + Missense_Mutation SNP A A C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 CDH24 64403 broad.mit.edu 37 14 23521190 23521190 + Frame_Shift_Del DEL C - - novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 CFHR2 3080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196927137 196927137 + Missense_Mutation SNP C C A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 CILP 8483 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65499358 65499358 + Silent SNP G G T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 CLCN7 1186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1510843 1510843 + Missense_Mutation SNP C C A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 COBL 23242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 51096089 51096089 + Missense_Mutation SNP C C G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 DDX12 0 broad.mit.edu 37 12 9578354 9578354 + Missense_Mutation SNP A C C novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 DLK2 65989 broad.mit.edu;hgsc.bcm.edu 37 6 43418521 43418521 + Missense_Mutation SNP C C A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 DPYD 1806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 98164907 98164907 + Missense_Mutation SNP C C T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 EPAS1 2034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 46611722 46611723 + Frame_Shift_Del DEL GT GT - novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 ETF1 2107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137846859 137846862 + Frame_Shift_Del DEL GTGT GTGT - novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 GTGT GTGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 FAM124A 220108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 51826047 51826047 + Missense_Mutation SNP A A T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 FAM55C 0 broad.mit.edu 37 3 101520532 101520532 + Missense_Mutation SNP G T T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 FANCB 2187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 14882777 14882777 + Missense_Mutation SNP C C A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 FLG2 388698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152323999 152323999 + Missense_Mutation SNP C C G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 FLNC 2318 broad.mit.edu;hgsc.bcm.edu 37 7 128484128 128484128 + Missense_Mutation SNP T T G rs184454068 by1000genomes;alternate_allele TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 GGNBP2 79893 broad.mit.edu 37 17 34901611 34901611 + Missense_Mutation SNP A G G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 GOLGA6D 653643 broad.mit.edu 37 15 75586110 75586110 + Missense_Mutation SNP C T T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 GPR112 139378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135441581 135441581 + Missense_Mutation SNP G G A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 HACE1 57531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 105298826 105298826 + Silent SNP A A G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 HIST2H3D 653604 broad.mit.edu;hgsc.bcm.edu 37 1 149785229 149785229 + Missense_Mutation SNP C C T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 IFITM2 10581 broad.mit.edu;hgsc.bcm.edu 37 11 308415 308415 + Missense_Mutation SNP A A C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 IYD 389434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150715251 150715251 + Missense_Mutation SNP G G C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 KCNF1 3754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11053935 11053935 + Silent SNP G G A novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 KIR3DL1 3811 hgsc.bcm.edu;ucsc.edu 37 19 55341674 55341674 + Frame_Shift_Del DEL T T - novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 LAMA5 3911 broad.mit.edu;hgsc.bcm.edu 37 20 60888399 60888399 + Missense_Mutation SNP C C G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 LILRB5 10990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54756788 54756788 + Missense_Mutation SNP G G A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 LIN28A 79727 broad.mit.edu 37 1 26737960 26737960 + Missense_Mutation SNP C T T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 LRRC37A3 374819 broad.mit.edu 37 17 62892204 62892204 + Missense_Mutation SNP T A A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 LYPLA1 10434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 54978369 54978369 + Missense_Mutation SNP C C T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 MAGI1 9223 broad.mit.edu;hgsc.bcm.edu 37 3 65425588 65425588 + Silent SNP C C T rs139785185 TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 MEOX1 4222 broad.mit.edu;hgsc.bcm.edu 37 17 41738797 41738797 + Missense_Mutation SNP G G T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 MITF 4286 broad.mit.edu;hgsc.bcm.edu 37 3 69987112 69987112 + Missense_Mutation SNP G G A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9070657 9070657 + Missense_Mutation SNP C C T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 MUC4 4585 broad.mit.edu 37 3 195505855 195505855 + Missense_Mutation SNP G T T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 MUC4 4585 broad.mit.edu 37 3 195505872 195505872 + Silent SNP A C C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 MUC4 4585 broad.mit.edu 37 3 195505874 195505874 + Missense_Mutation SNP G C C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 MUC4 4585 hgsc.bcm.edu 37 3 195510060 195510107 + In_Frame_Del DEL GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC - novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 NAP1L3 4675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 92927545 92927545 + Silent SNP T T C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 NHSL2 340527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71360504 71360504 + Missense_Mutation SNP A A G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 POLR2J4 84820 broad.mit.edu 37 7 44026251 44026251 + Missense_Mutation SNP T C C rs75823018 TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 PPP1R16B 26051 broad.mit.edu 37 20 37534706 37534706 + Missense_Mutation SNP A G G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 PRSS16 10279 hgsc.bcm.edu 37 6 27218496 27218497 + Frame_Shift_Ins INS - - C novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 PTPRQ 374462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80890073 80890073 + Missense_Mutation SNP G G A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23914058 23914058 + Missense_Mutation SNP C C G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23914059 23914059 + Missense_Mutation SNP T T G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 SERPINI1 5274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167540830 167540830 + Missense_Mutation SNP G G A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 SETD1A 9739 hgsc.bcm.edu 37 16 30975991 30975992 + Frame_Shift_Ins INS - - C novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47125280 47125289 + Frame_Shift_Del DEL TCTTGGCTCC TCTTGGCTCC - novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 TCTTGGCTCC TCTTGGCTCC TCTTGGCTCC - TCTTGGCTCC TCTTGGCTCC Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 SGK1 6446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 134495196 134495196 + Missense_Mutation SNP T T C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 STAU2 27067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74527933 74527933 + Missense_Mutation SNP G G C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 STAU2 27067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74527934 74527934 + Missense_Mutation SNP C C A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 SUSD2 56241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24580140 24580140 + Missense_Mutation SNP A A C novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 TAB3 257397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 30849594 30849594 + Missense_Mutation SNP G G A novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46658611 46658611 + Missense_Mutation SNP A A C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 TGFBRAP1 9392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105886106 105886106 + Missense_Mutation SNP C C A novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 TMPRSS6 164656 broad.mit.edu 37 22 37480371 37480371 + Missense_Mutation SNP G T T novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 TNFAIP1 7126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26667402 26667402 + Silent SNP C C T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 TNXB 7148 broad.mit.edu 37 6 32064926 32064927 + Frame_Shift_Del DEL CA - - rs150957138 by1000genomes TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 TP73 7161 hgsc.bcm.edu 37 1 3645988 3645989 + Frame_Shift_Ins INS - - G novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 TRIM41 90933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180651556 180651556 + Missense_Mutation SNP G G C novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 TRY6 0 broad.mit.edu 37 7 142481271 142481271 + Silent SNP A C C novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 USP35 57558 hgsc.bcm.edu 37 11 77921393 77921402 + Frame_Shift_Del DEL TGCTGCTCCG TGCTGCTCCG - novel TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 TGCTGCTCCG TGCTGCTCCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54 SETD2 29072 ucsc.edu 37 3 47125288 47125288 + Missense_Mutation SNP C C G novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C C G C C Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 SETD2 29072 ucsc.edu 37 3 47125289 47125289 + Missense_Mutation SNP C C T novel TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C C T C C Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 2f50f3b5-e656-48ec-ba8e-b6af62465fa0 ddcc7f39-2b43-4f58-8286-b87f48a97fd7 KRTAP20-2 337976 broad.mit.edu;ucsc.edu 37 21 32007632 32007632 + Missense_Mutation SNP T G G rs8132721 bycluster;by2hit2allele TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 69686924-5a9f-4e07-9e6d-62a3435f9971 eb4eb312-f11f-4a33-bf85-bb0d4a294c54