Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALAS1 211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52246387 52246387 + Silent SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 ATP8A2 51761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26148985 26148985 + Nonsense_Mutation SNP G G T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 CH25H 9023 broad.mit.edu;ucsc.edu 37 10 90966990 90966990 + Silent SNP C T T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 CHD3 1107 broad.mit.edu;hgsc.bcm.edu 37 17 7801818 7801818 + Missense_Mutation SNP C C A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 CLIC6 54102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 36081084 36081084 + Missense_Mutation SNP C C T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 CREB3L3 84699 hgsc.bcm.edu 37 19 4157198 4157199 + Frame_Shift_Ins INS - - C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 CUL2 8453 broad.mit.edu;ucsc.edu 37 10 35299283 35299283 + Missense_Mutation SNP C T T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 DLG4 1742 broad.mit.edu 37 17 7111517 7111517 + Missense_Mutation SNP G T T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 DNAJC7 7266 broad.mit.edu;ucsc.edu 37 17 40148366 40148366 + Missense_Mutation SNP A G G novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 EPB41L4B 54566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111976002 111976002 + Missense_Mutation SNP G G T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 FBXW7 55294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 153244135 153244135 + Silent SNP C C G novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 FRMPD4 9758 broad.mit.edu;ucsc.edu 37 X 12736620 12736620 + Silent SNP C A A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 GOT2 2806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58743325 58743325 + Missense_Mutation SNP T T C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 GPR39 2863 broad.mit.edu 37 2 133175094 133175094 + Nonsense_Mutation SNP G A A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 IWS1 55677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128263302 128263302 + Silent SNP G G T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 KRAS 3845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 25380282 25380282 + Missense_Mutation SNP G G C rs104886029 alternate_allele TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 KRT32 3882 broad.mit.edu;hgsc.bcm.edu 37 17 39619147 39619147 + Silent SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 LEMD1 93273 broad.mit.edu 37 1 205350814 205350814 + Missense_Mutation SNP G T T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 LILRB5 10990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54760570 54760570 + Missense_Mutation SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 LIMA1 51474 broad.mit.edu;ucsc.edu 37 12 50616129 50616129 + Missense_Mutation SNP T A A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 LOC391322 391322 broad.mit.edu;ucsc.edu 37 22 24373819 24373819 + Silent SNP T C C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 LOC645323 0 broad.mit.edu 37 5 87980582 87980583 + RNA DEL TC - - novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 LRRC18 474354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50121787 50121787 + Silent SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 LRRTM3 347731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 68688186 68688186 + Missense_Mutation SNP C C A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 MFSD6 54842 hgsc.bcm.edu;ucsc.edu 37 2 191334581 191334581 + Nonsense_Mutation SNP G G T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 NCOA6 23054 broad.mit.edu 37 20 33345744 33345744 + Silent SNP C T T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 NLRP9 338321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56243438 56243438 + Missense_Mutation SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 NRCAM 4897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107820706 107820706 + Missense_Mutation SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 ODZ1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123630881 123630881 + Missense_Mutation SNP C C G novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 OTUD3 23252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20233088 20233088 + Silent SNP A A G novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 PAPL 390928 broad.mit.edu 37 19 39591391 39591391 + Silent SNP T G G novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 PHF8 23133 broad.mit.edu;ucsc.edu 37 X 54043171 54043171 + Splice_Site SNP T C C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 PIGN 23556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 59815498 59815498 + Missense_Mutation SNP A A G novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 PIK3C2G 5288 broad.mit.edu;ucsc.edu 37 12 18649023 18649023 + Silent SNP T C C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 PSD4 23550 hgsc.bcm.edu;ucsc.edu 37 2 113943717 113943717 + Frame_Shift_Del DEL A A - novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 RPL5 6125 broad.mit.edu;ucsc.edu 37 1 93307322 93307322 + Splice_Site SNP G C C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 SEC11A 23478 broad.mit.edu;ucsc.edu 37 15 85230906 85230906 + Missense_Mutation SNP T C C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 SEMA3E 9723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82996992 82996992 + Silent SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 SFXN4 119559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 120921912 120921912 + Missense_Mutation SNP G G C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 SHC1 6464 broad.mit.edu;ucsc.edu 37 1 154941261 154941261 + Missense_Mutation SNP T G G novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 SLC4A7 9497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27442256 27442256 + Missense_Mutation SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 SNX25 83891 broad.mit.edu;ucsc.edu 37 4 186283245 186283245 + Missense_Mutation SNP T C C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 TARBP1 6894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234599596 234599596 + Silent SNP T T C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 TAS2R46 259292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11214646 11214646 + Missense_Mutation SNP G G T novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 TTC17 55761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 43469635 43469635 + Missense_Mutation SNP G G A novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 Unknown 0 broad.mit.edu 37 17 20405972 20405972 + RNA SNP G A A rs62068021 bycluster;byfrequency TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 Unknown 0 broad.mit.edu 37 6 28829145 28829146 + RNA DEL TA - - novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 TA TA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4 Unknown 0 broad.mit.edu 37 8 74332336 74332336 + Frame_Shift_Del DEL G - - novel TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e7128330-77b1-48be-b9f0-be986aa63ea8 c580da30-e65c-4abb-9903-3749bde02be4