Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACSF2 80221 hgsc.bcm.edu;ucsc.edu 37 17 48551039 48551039 + Missense_Mutation SNP A A G novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ADAM21 8747 hgsc.bcm.edu 37 14 70924697 70924697 + Missense_Mutation SNP A A G rs45545935 bycluster TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ADAMTS17 170691 hgsc.bcm.edu;ucsc.edu 37 15 100649280 100649281 + In_Frame_Ins INS - - CTCCTT novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 AGK 55750 hgsc.bcm.edu;ucsc.edu 37 7 141336815 141336815 + Nonsense_Mutation SNP A A T novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ANKRD55 79722 hgsc.bcm.edu 37 5 55466560 55466574 + In_Frame_Del DEL CGGCCATTTTTATCT CGGCCATTTTTATCT - novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CGGCCATTTTTATCT CGGCCATTTTTATCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ATRX 546 hgsc.bcm.edu;ucsc.edu 37 X 76938884 76938884 + Missense_Mutation SNP G G T novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 AVIL 10677 hgsc.bcm.edu 37 12 58203422 58203423 + Frame_Shift_Ins INS - - C novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 BARD1 580 hgsc.bcm.edu;ucsc.edu 37 2 215645503 215645523 + In_Frame_Del DEL TGGTGAAGAACATTCAGGCAA TGGTGAAGAACATTCAGGCAA - rs28997575 bycluster;byfrequency;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 TGGTGAAGAACATTCAGGCAA TGGTGAAGAACATTCAGGCAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 C12orf44 60673 hgsc.bcm.edu;ucsc.edu 37 12 52467675 52467697 + Frame_Shift_Del DEL GGGGAGTTCAAGGTAAGGGTGTC GGGGAGTTCAAGGTAAGGGTGTC - rs143921343 by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 GGGGAGTTCAAGGTAAGGGTGTC GGGGAGTTCAAGGTAAGGGTGTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 C20orf191 0 hgsc.bcm.edu 37 20 26084251 26084251 + RNA SNP C C T rs61752036 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 CACNA1E 777 hgsc.bcm.edu;ucsc.edu 37 1 181705481 181705481 + Silent SNP G G A novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 CCDC144NL 339184 hgsc.bcm.edu 37 17 20768763 20768763 + Missense_Mutation SNP T T C novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 CDCA7 83879 hgsc.bcm.edu;ucsc.edu 37 2 174224187 174224187 + Missense_Mutation SNP G G A novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 CEACAM3 1084 hgsc.bcm.edu 37 19 42301733 42301733 + Missense_Mutation SNP G G C rs61737016 bycluster;byfrequency;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 CEACAM3 1084 hgsc.bcm.edu;ucsc.edu 37 19 42301763 42301763 + Missense_Mutation SNP A A C rs61737014 byfrequency;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 DPCR1 135656 hgsc.bcm.edu 37 6 30917574 30917574 + Missense_Mutation SNP A A G novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 GPR50 9248 hgsc.bcm.edu;ucsc.edu 37 X 150349558 150349569 + In_Frame_Del DEL CACCACTGGCCA CACCACTGGCCA - rs68058591 TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CACCACTGGCCA CACCACTGGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 GPRC6A 222545 hgsc.bcm.edu 37 6 117113761 117113762 + Frame_Shift_Ins INS - - GG novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 GPRC6A 222545 hgsc.bcm.edu 37 6 117113762 117113763 + Frame_Shift_Ins INS - - A novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 GPRC6A 222545 hgsc.bcm.edu;ucsc.edu 37 6 117113765 117113766 + In_Frame_Ins INS - - TCC novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 HGC6.3 100128124 hgsc.bcm.edu 37 6 168377092 168377092 + Missense_Mutation SNP G G T novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 HHLA2 11148 hgsc.bcm.edu 37 3 108081191 108081195 + Frame_Shift_Del DEL CCGAG CCGAG - novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CCGAG CCGAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 HIST1H2BM 8342 hgsc.bcm.edu;ucsc.edu 37 6 27782814 27782832 + Frame_Shift_Del DEL TTTCCACCATGCCTGAACC TTTCCACCATGCCTGAACC - novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 TTTCCACCATGCCTGAACC TTTCCACCATGCCTGAACC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ICMT 23463 hgsc.bcm.edu;ucsc.edu 37 1 6295024 6295024 + Missense_Mutation SNP C C T novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 IFNK 56832 hgsc.bcm.edu 37 9 27524364 27524365 + Frame_Shift_Ins INS - - TGTT novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 KRTAP4-1 85285 hgsc.bcm.edu;ucsc.edu 37 17 39341039 39341039 + Missense_Mutation SNP G G A novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 LAD1 3898 hgsc.bcm.edu 37 1 201356002 201356004 + In_Frame_Del DEL CCA CCA - rs139441737 bycluster;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CCA CCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 LNP1 348801 hgsc.bcm.edu 37 3 100170598 100170598 + Silent SNP C C T rs78633312 TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 MUC4 4585 hgsc.bcm.edu 37 3 195506271 195506318 + In_Frame_Del DEL ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC - novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 NTRK1 4914 hgsc.bcm.edu;ucsc.edu 37 1 156845424 156845424 + Missense_Mutation SNP C C A novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 OR2L3 391192 hgsc.bcm.edu 37 1 248224587 248224587 + Missense_Mutation SNP A A G rs61525219 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 OR4C15 81309 hgsc.bcm.edu 37 11 55322611 55322635 + Frame_Shift_Del DEL TCTCTGAGAACACACAGTTCTGAAG TCTCTGAGAACACACAGTTCTGAAG - rs72140406 TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 TCTCTGAGAACACACAGTTCTGAAG TCTCTGAGAACACACAGTTCTGAAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 OR51B5 282763 hgsc.bcm.edu;ucsc.edu 37 11 5364542 5364558 + Frame_Shift_Del DEL CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG - rs147062602 by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 PER3 8863 hgsc.bcm.edu 37 1 7890053 7890053 + Missense_Mutation SNP G G A rs1776342 bycluster;byfrequency;by2hit2allele TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 RPGR 6103 hgsc.bcm.edu 37 X 38145700 38145700 + Missense_Mutation SNP T T C novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 RPGR 6103 hgsc.bcm.edu 37 X 38145704 38145704 + Missense_Mutation SNP C C T novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 SAMD9L 219285 hgsc.bcm.edu 37 7 92761054 92761054 + Missense_Mutation SNP G G C rs4729075 alternate_allele TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 SLC3A2 6520 hgsc.bcm.edu;ucsc.edu 37 11 62650410 62650410 + Missense_Mutation SNP A A G novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 STK35 140901 hgsc.bcm.edu;ucsc.edu 37 20 2097952 2097952 + Silent SNP T T A novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 SYNPO2 171024 hgsc.bcm.edu 37 4 119947962 119947964 + In_Frame_Del DEL AAG AAG - rs111228039 TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 AAG AAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 TM6SF2 53345 hgsc.bcm.edu 37 19 19381023 19381023 + Silent SNP G G A novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 TOP2A 7153 hgsc.bcm.edu;ucsc.edu 37 17 38557157 38557157 + Missense_Mutation SNP C C T rs192926120 by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179422465 179422465 + Missense_Mutation SNP C C T novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ZNF208 7757 hgsc.bcm.edu 37 19 22156286 22156286 + Missense_Mutation SNP C C T novel TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ZNF676 163223 hgsc.bcm.edu 37 19 22363631 22363631 + Silent SNP G G A rs75683199 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21 ZNF676 163223 hgsc.bcm.edu 37 19 22363634 22363634 + Missense_Mutation SNP C C A rs76456473 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dc677d8e-ec39-4038-a86c-8290dacd377b 827b7591-b763-4d3f-beb3-c8c53b03bc21