Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA13 154664 hgsc.bcm.edu 37 7 48563848 48563848 + Missense_Mutation SNP C C T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ABCB1 5243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87196210 87196210 + Nonsense_Mutation SNP C C A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ACACB 32 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109689927 109689927 + Missense_Mutation SNP A A T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91631974 91631974 + Missense_Mutation SNP T T A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ANKRD31 256006 hgsc.bcm.edu;ucsc.edu 37 5 74400774 74400774 + Missense_Mutation SNP C C A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ANKRD33 341405 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52282005 52282005 + Missense_Mutation SNP C C T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ARHGEF17 9828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73066671 73066671 + Frame_Shift_Del DEL C C - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ATP5SL 55101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41942328 41942328 + Missense_Mutation SNP A A G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ATP8B4 79895 broad.mit.edu;ucsc.edu 37 15 50211075 50211075 + Missense_Mutation SNP C A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ATP9A 10079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 50292728 50292728 + Silent SNP A A T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 BAGE3 85318 broad.mit.edu;hgsc.bcm.edu 37 21 11049593 11049593 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443568 52443568 + Splice_Site SNP A A T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52441418 52441418 + Missense_Mutation SNP G G C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 C19orf38 255809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10979899 10979899 + Silent SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 C4orf17 84103 hgsc.bcm.edu 37 4 100443802 100443802 + Silent SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 CCDC132 55610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92970752 92970752 + Missense_Mutation SNP A A G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 CCT2 10576 broad.mit.edu;ucsc.edu 37 12 69985846 69985846 + Silent SNP G T T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 COL24A1 255631 broad.mit.edu;ucsc.edu 37 1 86252141 86252141 + Missense_Mutation SNP T A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 CPZ 8532 hgsc.bcm.edu;ucsc.edu 37 4 8613867 8613867 + Silent SNP G G A rs2302573 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 CXCR4 7852 broad.mit.edu;ucsc.edu 37 2 136872770 136872770 + Missense_Mutation SNP A G G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 DDX12 0 broad.mit.edu;ucsc.edu 37 12 9574042 9574042 + Missense_Mutation SNP C A A rs7298124 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 DPCR1 135656 hgsc.bcm.edu 37 6 30918543 30918545 + In_Frame_Del DEL TTG TTG - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 TTG TTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103024178 103024178 + Missense_Mutation SNP G G T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 EGFLAM 133584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38427225 38427225 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 EME1 146956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48456585 48456585 + Missense_Mutation SNP G G C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 EPHA1 2041 broad.mit.edu;hgsc.bcm.edu 37 7 143097036 143097036 + Silent SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ERCC4 2072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 14041845 14041845 + Missense_Mutation SNP C C G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 FBRS 64319 broad.mit.edu;hgsc.bcm.edu 37 16 30679940 30679940 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 FOXRED2 80020 broad.mit.edu;ucsc.edu 37 22 36894120 36894120 + Missense_Mutation SNP T C C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 G2E3 55632 hgsc.bcm.edu 37 14 31074772 31074772 + Frame_Shift_Del DEL A A - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 GATA4 2626 broad.mit.edu;ucsc.edu 37 8 11615820 11615820 + Missense_Mutation SNP A C C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 GIGYF1 64599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100281055 100281055 + Nonsense_Mutation SNP T T A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 GLP2R 9340 hgsc.bcm.edu 37 17 9737136 9737136 + Missense_Mutation SNP C C T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 GOT1 2805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 101165548 101165549 + Frame_Shift_Del DEL GA GA - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 HSPA4L 22824 broad.mit.edu;ucsc.edu 37 4 128732596 128732596 + Missense_Mutation SNP C A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 KIF3B 9371 hgsc.bcm.edu;ucsc.edu 37 20 30915461 30915461 + Silent SNP T T C rs1129012 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LAIR2 3904 broad.mit.edu;ucsc.edu 37 19 55019389 55019389 + Silent SNP G T T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LEF1 51176 hgsc.bcm.edu 37 4 109084820 109084820 + Silent SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LILRB3 11025 broad.mit.edu;hgsc.bcm.edu 37 19 54721109 54721109 + Splice_Site SNP C C A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LRFN5 145581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 42360818 42360818 + Missense_Mutation SNP C C T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LRRIQ3 127255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74540469 74540469 + Missense_Mutation SNP T T C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LY6G6F 259215 broad.mit.edu;hgsc.bcm.edu 37 6 31675443 31675444 + Frame_Shift_Ins INS - - A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 MBD1 4152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47803544 47803544 + Silent SNP A A C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 MGAT4C 25834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 86383258 86383258 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 MS4A2 2206 hgsc.bcm.edu;ucsc.edu 37 11 59860282 59860283 + Frame_Shift_Ins INS - - T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11189845 11189845 + Missense_Mutation SNP G G C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 NUDT4P1 440672 hgsc.bcm.edu;ucsc.edu 37 12 93789240 93789240 + RNA SNP T T A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 OGDH 4967 hgsc.bcm.edu;ucsc.edu 37 7 44713430 44713434 + Frame_Shift_Del DEL TGACC TGACC - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 TGACC TGACC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 OR2L2 26246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248202228 248202228 + Missense_Mutation SNP T T C rs138507569 by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068157 5068157 + Silent SNP C C T rs149427006 TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 OR8B3 390271 broad.mit.edu;hgsc.bcm.edu 37 11 124266328 124266328 + Missense_Mutation SNP A A T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 OR8G2 26492 hgsc.bcm.edu 37 11 124096257 124096257 + Missense_Mutation SNP C C T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 PCNXL2 80003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 233270864 233270864 + Missense_Mutation SNP C C G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 PENK 5179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57354188 57354188 + Silent SNP C C T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 PHACTR3 116154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 58318178 58318178 + Silent SNP G G C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 PIWIL1 9271 broad.mit.edu;ucsc.edu 37 12 130845828 130845828 + Missense_Mutation SNP C A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 PNPLA8 50640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 108155935 108155935 + Missense_Mutation SNP T T C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87662898 87662898 + Missense_Mutation SNP G G C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 PTPN2 5771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 12814354 12814354 + Missense_Mutation SNP T T G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 RPE65 6121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 68903915 68903915 + Silent SNP G G C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SETD4 54093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37418187 37418187 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SLC39A13 91252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47433931 47433931 + Silent SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SLC4A3 6508 broad.mit.edu;ucsc.edu 37 2 220502504 220502504 + Missense_Mutation SNP T C C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SLCO4C1 353189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 101597678 101597678 + Missense_Mutation SNP A A G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SLIT3 6586 hgsc.bcm.edu 37 5 168096839 168096839 + Missense_Mutation SNP C C T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SMCR8 140775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18219207 18219207 + Missense_Mutation SNP T T A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SNX32 254122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65617711 65617711 + Missense_Mutation SNP G G C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 SYNJ2 8871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 158517224 158517224 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46661744 46661744 + Missense_Mutation SNP A A T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43531237 43531237 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 TMEM63B 55362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44107238 44107238 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 TNS3 64759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 47384598 47384598 + Silent SNP G G T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179401957 179401957 + Missense_Mutation SNP T T G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 TXNIP 10628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145440274 145440274 + Missense_Mutation SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 USP2 9099 broad.mit.edu;ucsc.edu 37 11 119229962 119229962 + Missense_Mutation SNP G A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 WBP11 51729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14943401 14943401 + Missense_Mutation SNP C C A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85722980 85722980 + Missense_Mutation SNP A A G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 XPR1 9213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180849261 180849261 + Missense_Mutation SNP T T C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 XPR1 9213 broad.mit.edu;ucsc.edu 37 1 180794054 180794054 + Missense_Mutation SNP A G G novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ZNF233 353355 hgsc.bcm.edu 37 19 44778796 44778796 + Frame_Shift_Del DEL G G - rs146145111 bycluster;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ZNF284 342909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44586259 44586259 + Splice_Site SNP G G A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ZNF468 90333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53345371 53345371 + Missense_Mutation SNP G G A rs148965254 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ZNF607 84775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38190296 38190296 + Missense_Mutation SNP T T A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 ZNF800 168850 broad.mit.edu;hgsc.bcm.edu 37 7 127013601 127013601 + Missense_Mutation SNP T T C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 AQP1 358 broad.mit.edu 37 7 30963232 30963232 + Missense_Mutation SNP G A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 C3orf63 0 broad.mit.edu 37 3 56703746 56703746 + Silent SNP A C C rs13094666 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 CTNNA2 1496 broad.mit.edu 37 2 80136761 80136761 + Silent SNP G A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 DIO3 1735 broad.mit.edu 37 14 102028537 102028537 + Missense_Mutation SNP G T T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 FRMPD1 22844 broad.mit.edu 37 9 37746529 37746529 + Frame_Shift_Del DEL G - - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 GPR77 27202 broad.mit.edu 37 19 47844249 47844249 + Missense_Mutation SNP C T T rs144687097 TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 KIAA1522 57648 broad.mit.edu 37 1 33236584 33236584 + Missense_Mutation SNP C T T novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 KLF9 687 broad.mit.edu 37 9 73027890 73027890 + Silent SNP T C C novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LOC284837 284837 broad.mit.edu 37 21 45225896 45225896 + RNA DEL T - - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 LOC401010 401010 broad.mit.edu 37 2 132201889 132201889 + Missense_Mutation SNP C A A rs2007096 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 MUC4 4585 broad.mit.edu 37 3 195513812 195513812 + Missense_Mutation SNP T A A novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 Unknown 0 broad.mit.edu 37 20 31497682 31497682 + Missense_Mutation SNP G T T rs78951406 by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07 Unknown 0 broad.mit.edu 37 7 63816325 63816325 + RNA DEL G - - novel TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a3a06421-7838-4ac2-b5d5-45d2ea651368 f3812874-ff21-40d4-b7b7-5e13b2455d07