Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105418731 105418731 + Frame_Shift_Del DEL G G - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d ARHGAP5 394 hgsc.bcm.edu 37 14 32561313 32561313 + Nonsense_Mutation SNP C C T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d ARHGAP5 394 hgsc.bcm.edu 37 14 32561316 32561316 + Nonsense_Mutation SNP G G T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d ARHGAP5 394 hgsc.bcm.edu 37 14 32561340 32561340 + Missense_Mutation SNP G G A rs78337553 TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d ATF6B 1388 hgsc.bcm.edu 37 6 32088654 32088655 + Frame_Shift_Ins INS - - G novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203420922 203420922 + Missense_Mutation SNP A A T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203420924 203420924 + Missense_Mutation SNP A A T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d C4orf39 0 hgsc.bcm.edu;ucsc.edu 37 4 165878425 165878426 + Frame_Shift_Del DEL TC TC - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d CTSS 1520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150724283 150724283 + Missense_Mutation SNP C C G novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d DIAPH1 1729 hgsc.bcm.edu 37 5 140953563 140953563 + Silent SNP T T A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d EGFL8 80864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32134517 32134517 + Silent SNP G G A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d EPHA10 284656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38186483 38186483 + Missense_Mutation SNP C C T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d IFI16 3428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158988366 158988366 + Silent SNP G G A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d IGSF3 3321 hgsc.bcm.edu 37 1 117142613 117142613 + Missense_Mutation SNP C C T rs76151115 bycluster;byfrequency TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d ISL1 3670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 50685635 50685635 + Missense_Mutation SNP G G C novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d KIAA1598 57698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118719667 118719667 + Missense_Mutation SNP C C T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150174142 150174142 + Missense_Mutation SNP C C A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d LRRK1 79705 broad.mit.edu;hgsc.bcm.edu 37 15 101606305 101606305 + Missense_Mutation SNP C C T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d MORC2 22880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31328363 31328363 + Missense_Mutation SNP G G C novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d MRPL14 64928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44084332 44084332 + Missense_Mutation SNP C C T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d MUC4 4585 hgsc.bcm.edu 37 3 195505960 195505960 + Missense_Mutation SNP G G C rs376166 TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d MYH3 4621 hgsc.bcm.edu;ucsc.edu 37 17 10537344 10537344 + Frame_Shift_Del DEL C C - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d MYH3 4621 hgsc.bcm.edu;ucsc.edu 37 17 10537346 10537347 + Frame_Shift_Del DEL TA TA - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TA TA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d NOTCH3 4854 broad.mit.edu;hgsc.bcm.edu 37 19 15290202 15290202 + Missense_Mutation SNP G G C novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d OSBPL1A 114876 hgsc.bcm.edu;ucsc.edu 37 18 21898718 21898721 + Frame_Shift_Del DEL ACCA ACCA - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 ACCA ACCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d PON3 5446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94993300 94993300 + Silent SNP C C A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d PTGS2 5743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186643675 186643675 + Missense_Mutation SNP A A C novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d PTPRN 5798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220159737 220159737 + Missense_Mutation SNP C C T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d RGMB 285704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 98115300 98115300 + Silent SNP A A T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d SCAF1 58506 hgsc.bcm.edu 37 19 50154291 50154294 + Frame_Shift_Del DEL TGCA TGCA - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TGCA TGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d SELL 6402 hgsc.bcm.edu;ucsc.edu 37 1 169665718 169665718 + RNA SNP G G A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d TFDP3 51270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132351243 132351243 + Missense_Mutation SNP T T G novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d TMCO7 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68953056 68953056 + Silent SNP C C A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d TP53BP2 7159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223983853 223983853 + Silent SNP T T A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d TRAP1 10131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3726076 3726076 + Missense_Mutation SNP A A G novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d UBE3C 9690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156974262 156974262 + Missense_Mutation SNP A A G novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d USP15 9958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 62790158 62790158 + Missense_Mutation SNP G G C novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d VCX 26609 hgsc.bcm.edu 37 X 7811830 7811859 + In_Frame_Del DEL GAACCACTGAGTCAGGAGAGCGAGGTGGAA GAACCACTGAGTCAGGAGAGCGAGGTGGAA - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 GAACCACTGAGTCAGGAGAGCGAGGTGGAA GAACCACTGAGTCAGGAGAGCGAGGTGGAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191569 10191569 + Frame_Shift_Del DEL C C - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d ZNF653 115950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11598181 11598181 + Missense_Mutation SNP G G A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d GIPR 2696 broad.mit.edu 37 19 46185190 46185190 + Silent SNP C T T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d LOC152024 0 broad.mit.edu 37 3 24138195 24138196 + RNA INS - T T novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d MOCS3 27304 broad.mit.edu 37 20 49575435 49575435 + Frame_Shift_Del DEL A - - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d REXO1L1 254958 broad.mit.edu 37 8 86786310 86786310 + RNA SNP G T T rs4249008 by2hit2allele TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d Unknown 0 broad.mit.edu 37 1 32373167 32373167 + RNA DEL T - - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d Unknown 0 broad.mit.edu 37 15 59153166 59153167 + RNA INS - A A rs34605445 bycluster;by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d Unknown 0 broad.mit.edu 37 16 74425826 74425826 + Missense_Mutation SNP G A A rs71363119 TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d Unknown 0 broad.mit.edu 37 3 126385091 126385091 + Frame_Shift_Del DEL C - - rs146507124 by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d XIST 7503 broad.mit.edu 37 X 73071846 73071846 + RNA DEL A - - novel TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2cb6b578-8543-4a12-8331-1721ddc47303 1e656287-a1d9-4273-bbd2-c4909d29366d