Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC9 10060 hgsc.bcm.edu;ucsc.edu 37 12 22065833 22065833 + Silent SNP G G T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 AFAP1L2 84632 hgsc.bcm.edu 37 10 116057098 116057098 + Missense_Mutation SNP G G A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ANAPC7 51434 hgsc.bcm.edu 37 12 110825591 110825591 + Silent SNP A A G rs61754907 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ANGPT1 284 hgsc.bcm.edu;ucsc.edu 37 8 108334182 108334182 + Missense_Mutation SNP C C A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ANKRD27 84079 hgsc.bcm.edu;ucsc.edu 37 19 33133044 33133044 + Missense_Mutation SNP T T C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ARAP3 64411 hgsc.bcm.edu 37 5 141046056 141046056 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ASAP3 55616 hgsc.bcm.edu 37 1 23756377 23756377 + Missense_Mutation SNP G G C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 C11orf49 79096 hgsc.bcm.edu 37 11 47185748 47185748 + Missense_Mutation SNP T T A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 C17orf74 201243 hgsc.bcm.edu 37 17 7330114 7330114 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 C20orf132 0 hgsc.bcm.edu 37 20 35776260 35776260 + Missense_Mutation SNP A A T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 C3orf27 23434 hgsc.bcm.edu 37 3 128292319 128292320 + Frame_Shift_Del DEL TC TC - rs147519916 bycluster;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 CCDC160 347475 hgsc.bcm.edu;ucsc.edu 37 X 133378953 133378953 + Missense_Mutation SNP C C A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 CENPT 80152 hgsc.bcm.edu 37 16 67863680 67863680 + Missense_Mutation SNP A A G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 CNGA4 1262 hgsc.bcm.edu;ucsc.edu 37 11 6262905 6262905 + Missense_Mutation SNP A A C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 DDX1 1653 hgsc.bcm.edu 37 2 15746321 15746321 + Silent SNP A A C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 DDX31 64794 hgsc.bcm.edu;ucsc.edu 37 9 135538026 135538026 + Silent SNP T T C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 DYDC1 143241 hgsc.bcm.edu;ucsc.edu 37 10 82112316 82112316 + Missense_Mutation SNP T T G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 FAM179A 165186 hgsc.bcm.edu;ucsc.edu 37 2 29256422 29256422 + Missense_Mutation SNP A A G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 FOXP2 93986 hgsc.bcm.edu 37 7 114284748 114284748 + Missense_Mutation SNP A A T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 FRMPD1 22844 hgsc.bcm.edu 37 9 37740099 37740099 + Missense_Mutation SNP A A G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 GEMIN5 25929 hgsc.bcm.edu;ucsc.edu 37 5 154271054 154271054 + Missense_Mutation SNP T T A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 90000251 90000252 + Frame_Shift_Ins INS - - T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 IGSF10 285313 hgsc.bcm.edu;ucsc.edu 37 3 151160902 151160902 + Missense_Mutation SNP C C T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 LBH 81606 hgsc.bcm.edu 37 2 30480413 30480413 + Missense_Mutation SNP C C T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 LCE1B 353132 hgsc.bcm.edu 37 1 152785261 152785261 + Missense_Mutation SNP C C G rs76754774 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 MAGEB2 4113 hgsc.bcm.edu 37 X 30236766 30236766 + Silent SNP G G A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 MAML2 84441 hgsc.bcm.edu 37 11 95825797 95825797 + Silent SNP A A G rs7931870 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 MAP2 4133 hgsc.bcm.edu 37 2 210559405 210559405 + Missense_Mutation SNP G G C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 MPDZ 8777 hgsc.bcm.edu 37 9 13192294 13192294 + Missense_Mutation SNP C C G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 MUC2 4583 hgsc.bcm.edu 37 11 1082315 1082315 + Silent SNP C C T rs58179195 byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 NUP160 23279 hgsc.bcm.edu;ucsc.edu 37 11 47861527 47861527 + Missense_Mutation SNP C C G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 OSBPL10 114884 hgsc.bcm.edu 37 3 31712424 31712424 + Missense_Mutation SNP C C A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 P2RY10 27334 hgsc.bcm.edu;ucsc.edu 37 X 78216453 78216453 + Missense_Mutation SNP C C T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 PLEKHH3 79990 hgsc.bcm.edu 37 17 40825443 40825443 + Missense_Mutation SNP T T C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 POR 5447 hgsc.bcm.edu 37 7 75614139 75614139 + Missense_Mutation SNP C C T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 PPM1B 5495 hgsc.bcm.edu;ucsc.edu 37 2 44429133 44429133 + Silent SNP T T A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 PPP4R4 57718 hgsc.bcm.edu;ucsc.edu 37 14 94697034 94697034 + Silent SNP C C A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 PTCHD3 374308 hgsc.bcm.edu;ucsc.edu 37 10 27688016 27688016 + Missense_Mutation SNP C C T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 REM1 28954 hgsc.bcm.edu 37 20 30064331 30064331 + Missense_Mutation SNP A A G rs1006459 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 RIN1 9610 hgsc.bcm.edu 37 11 66100043 66100043 + Missense_Mutation SNP G G A rs2282532 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 SERPINA6 866 hgsc.bcm.edu;ucsc.edu 37 14 94780531 94780531 + Missense_Mutation SNP T T A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 SPEG 10290 hgsc.bcm.edu 37 2 220342464 220342464 + Missense_Mutation SNP A A G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I WXS 454 SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 TAF1L 138474 hgsc.bcm.edu;ucsc.edu 37 9 32634567 32634567 + Missense_Mutation SNP C C A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 TRO 7216 hgsc.bcm.edu 37 X 54957281 54957281 + Missense_Mutation SNP T T C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 TULP3 7289 hgsc.bcm.edu;ucsc.edu 37 12 3047337 3047337 + Missense_Mutation SNP C C A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 VPS13B 157680 hgsc.bcm.edu 37 8 100133693 100133693 + Missense_Mutation SNP G G T novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ZDHHC22 283576 hgsc.bcm.edu 37 14 77605834 77605834 + Missense_Mutation SNP G G C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ZNF214 7761 hgsc.bcm.edu;ucsc.edu 37 11 7022631 7022631 + Missense_Mutation SNP G G C novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ZNF500 26048 hgsc.bcm.edu 37 16 4812665 4812665 + Silent SNP G G A novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95 ZNF687 57592 hgsc.bcm.edu;ucsc.edu 37 1 151261955 151261955 + Missense_Mutation SNP T T G novel TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 72fffb6f-a58b-4f05-87fe-ccd28b4babff 80217c32-1ac8-4909-843d-2e351684dc95