Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ANO8 57719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17439020 17439020 + Missense_Mutation SNP G G C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 AP3S2 10239 broad.mit.edu;ucsc.edu 37 15 90431758 90431758 + Missense_Mutation SNP T C C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 ARID2 196528 hgsc.bcm.edu 37 12 46123828 46123828 + Missense_Mutation SNP T T A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 ARSD 414 hgsc.bcm.edu 37 X 2835999 2836007 + In_Frame_Del DEL CCACGCCGG CCACGCCGG - rs113556864 TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 CCACGCCGG CCACGCCGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 C17orf103 256302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 21146678 21146678 + Missense_Mutation SNP T T A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 C2orf44 80304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24261024 24261024 + Silent SNP G G C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 CACNA1C 775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2711091 2711091 + Silent SNP G G T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 CASP10 843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202050621 202050621 + Frame_Shift_Del DEL T T - novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 CLIC6 54102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 36081739 36081739 + Missense_Mutation SNP G G C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 CRIPAK 285464 hgsc.bcm.edu 37 4 1389125 1389125 + Missense_Mutation SNP T T C rs146490783 byfrequency TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 DNAJC21 134218 hgsc.bcm.edu;ucsc.edu 37 5 34935891 34935892 + Frame_Shift_Del DEL CG CG - novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 CG CG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 DOCK10 55619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225710302 225710302 + Missense_Mutation SNP A A C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 GPR123 84435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 134910562 134910562 + Missense_Mutation SNP C C T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 HOXB3 3213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46628008 46628008 + Silent SNP C C T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 IPO4 79711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24655987 24655987 + Missense_Mutation SNP T T G novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 IPP 3652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46184982 46184982 + Missense_Mutation SNP G G C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 IPP 3652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46184983 46184983 + Missense_Mutation SNP T T A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 KIAA0564 0 hgsc.bcm.edu;ucsc.edu 37 13 42461418 42461428 + Frame_Shift_Del DEL GGCAAGCCCAA GGCAAGCCCAA - novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 GGCAAGCCCAA GGCAAGCCCAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 KIF2A 3796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 61677018 61677018 + Missense_Mutation SNP C C T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 LIPI 149998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15561671 15561671 + Missense_Mutation SNP G G A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 MADCAM1 8174 hgsc.bcm.edu 37 19 501762 501762 + Missense_Mutation SNP A A C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 NCOA4 8031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 51582253 51582253 + Missense_Mutation SNP G G A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 NIPAL3 57185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24766690 24766690 + Missense_Mutation SNP T T A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 OSBP2 23762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31266569 31266569 + Missense_Mutation SNP A A G novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52637711 52637711 + Nonsense_Mutation SNP G G A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140255906 140255906 + Missense_Mutation SNP G G A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 PHRF1 57661 broad.mit.edu;ucsc.edu 37 11 608267 608267 + Silent SNP C A A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 PRH1 5554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11035696 11035696 + Splice_Site SNP C C T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 PRKDC 5591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48794597 48794597 + Missense_Mutation SNP T T C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 RAB32 10981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146875689 146875689 + Frame_Shift_Del DEL T T - novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 RASGRF1 5923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79356851 79356851 + Missense_Mutation SNP G G T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 ROBO2 6092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 77666705 77666705 + Missense_Mutation SNP C C G novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 SCN1A 6323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166870294 166870294 + Missense_Mutation SNP G G T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 SKA3 221150 hgsc.bcm.edu 37 13 21746645 21746645 + Splice_Site SNP T T G novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 SULF1 23213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70533276 70533276 + Nonsense_Mutation SNP C C T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 SYT3 84258 broad.mit.edu;hgsc.bcm.edu 37 19 51135742 51135742 + Missense_Mutation SNP G G T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 TLE6 79816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2987728 2987728 + Missense_Mutation SNP G G A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 TRIM8 81603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104404879 104404879 + Missense_Mutation SNP T T C novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 UHRF1BP1L 23074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100433380 100433380 + Silent SNP C C T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183747 10183747 + Silent SNP C C A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183748 10183748 + Nonsense_Mutation SNP C C T novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS Illumina Miseq Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 ZNF77 58492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2933730 2933730 + Missense_Mutation SNP T T A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 ADAMTSL5 339366 broad.mit.edu 37 19 1508092 1508092 + Missense_Mutation SNP C G G novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 DOK7 285489 broad.mit.edu 37 4 3494670 3494671 + Frame_Shift_Ins INS - A A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 EIF2S2 8894 broad.mit.edu 37 20 32699916 32699916 + Missense_Mutation SNP T A A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 LOC642587 0 broad.mit.edu 37 1 209605623 209605623 + Missense_Mutation SNP G A A rs12407854 byhapmap TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 MYO9B 4650 broad.mit.edu 37 19 17306197 17306197 + Missense_Mutation SNP G A A novel TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 Unknown 0 broad.mit.edu 37 2 96525717 96525718 + RNA INS - T T rs111957693 bycluster;by1000genomes TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285 WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a776bde5-7503-459c-8419-dc0d744a651e f0385a6f-db22-4f21-a571-206fb7f74285