Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA13 154664 broad.mit.edu;hgsc.bcm.edu 37 7 48634311 48634311 + Silent SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 AQR 9716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35196663 35196663 + Missense_Mutation SNP A A T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 BBS1 582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66291217 66291217 + Missense_Mutation SNP A A C novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 C22orf9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45607978 45607978 + Missense_Mutation SNP C C G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 C6orf138 0 broad.mit.edu;ucsc.edu 37 6 48035980 48035980 + Missense_Mutation SNP C A A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CAGE1 285782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7373333 7373333 + Silent SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CCDC80 151887 hgsc.bcm.edu;ucsc.edu 37 3 112357355 112357356 + Frame_Shift_Ins INS - - T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66481767 66481767 + Missense_Mutation SNP A A C novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CD300LG 146894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41926061 41926061 + Missense_Mutation SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CDCA2 157313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25327412 25327412 + Missense_Mutation SNP A A G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CHIT1 1118 hgsc.bcm.edu 37 1 203188855 203188856 + Frame_Shift_Ins INS - - G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CLSTN1 22883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9801267 9801267 + Silent SNP C C T rs149205224 TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CNOT10 25904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 32750281 32750281 + Silent SNP T T A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 COX7A2 1347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 75947673 75947673 + Silent SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CPNE7 27132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89657544 89657544 + Missense_Mutation SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CREB3 10488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35736114 35736114 + Silent SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CYP1A2 1544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75042328 75042328 + Silent SNP G G A rs17861153 bycluster;byfrequency TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CYP39A1 51302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46563727 46563727 + Silent SNP A A T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 DENND2C 163259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 115144173 115144173 + Missense_Mutation SNP A A C novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 DSCAM 1826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 41450747 41450747 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21221941 21221941 + Silent SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 FBXL13 222235 hgsc.bcm.edu;ucsc.edu 37 7 102517966 102517966 + Frame_Shift_Del DEL T T - novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 GPLD1 2822 hgsc.bcm.edu;ucsc.edu 37 6 24473886 24473886 + Missense_Mutation SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 HLA-B 3106 hgsc.bcm.edu 37 6 31324051 31324051 + Missense_Mutation SNP C C A rs41551018 bycluster;byfrequency;by1000genomes TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 HNRNPM 4670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8528506 8528506 + Missense_Mutation SNP T T A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 INVS 27130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 103002449 103002449 + Silent SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 KDR 3791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55955623 55955623 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 KLF3 51274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38698861 38698861 + Missense_Mutation SNP A A G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 KLHL31 401265 broad.mit.edu;hgsc.bcm.edu 37 6 53520057 53520057 + Missense_Mutation SNP T T A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 MAS1 4142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160328147 160328147 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 MEF2D 4209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156446973 156446973 + Missense_Mutation SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 MICAL1 64780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 109774523 109774523 + Missense_Mutation SNP C C G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 MYO18B 84700 broad.mit.edu;hgsc.bcm.edu 37 22 26422488 26422488 + Missense_Mutation SNP A A G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 N6AMT1 29104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30255320 30255320 + Missense_Mutation SNP G G T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 NUP205 23165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135298932 135298932 + Missense_Mutation SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 OAZ3 51686 broad.mit.edu;hgsc.bcm.edu 37 1 151740624 151740624 + Missense_Mutation SNP T T G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 OR9G1 390174 hgsc.bcm.edu 37 11 56468235 56468235 + Silent SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PAH 5053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 103306603 103306603 + Missense_Mutation SNP A A T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PCDHB11 56125 hgsc.bcm.edu;ucsc.edu 37 5 140580451 140580453 + In_Frame_Del DEL TAG TAG - novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 TAG TAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PCMTD1 115294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52746175 52746175 + Missense_Mutation SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 144912241 144912241 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PDILT 204474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20380853 20380853 + Silent SNP G G T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PFN4 375189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24338472 24338472 + Missense_Mutation SNP A A T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PTEN 5728 hgsc.bcm.edu 37 10 89711969 89711970 + Frame_Shift_Ins INS - - C novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 - - - C - - Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 RAD17 5884 hgsc.bcm.edu;ucsc.edu 37 5 68682089 68682090 + Frame_Shift_Del DEL TT TT - novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 RASGRF2 5924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 80511696 80511696 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 RBM26 64062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 79911406 79911406 + Missense_Mutation SNP C C G rs140188767 alternate_allele TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 RFX6 222546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117241586 117241586 + Silent SNP C C T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 RUVBL2 10856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49517740 49517740 + Splice_Site SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 SALL4 57167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 50406800 50406800 + Missense_Mutation SNP A A G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 SCN10A 6336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38798548 38798548 + Silent SNP G G T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 SCNN1G 6340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 23203706 23203706 + Missense_Mutation SNP A A G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 SIPA1L2 57568 broad.mit.edu;hgsc.bcm.edu 37 1 232651061 232651061 + Nonsense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 SNX33 257364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75942230 75942230 + Missense_Mutation SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 SPG11 80208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44877930 44877930 + Silent SNP A A T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 STAG2 10735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123179198 123179198 + Missense_Mutation SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 STRN3 29966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31404443 31404443 + Missense_Mutation SNP A A T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 TARSL2 123283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 102261432 102261432 + Nonsense_Mutation SNP T T A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 TCL6 27004 broad.mit.edu;hgsc.bcm.edu 37 14 96129988 96129988 + RNA SNP T T C novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 TMEM132D 121256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130184668 130184668 + Missense_Mutation SNP G G T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu 37 19 31768802 31768802 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 TTBK1 84630 broad.mit.edu;hgsc.bcm.edu 37 6 43252048 43252048 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 TTLL5 23093 hgsc.bcm.edu;ucsc.edu 37 14 76349240 76349240 + Frame_Shift_Del DEL T T - novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 TWF2 11344 broad.mit.edu;ucsc.edu 37 3 52273016 52273016 + Missense_Mutation SNP C T T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 XPO1 7514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61706022 61706022 + Missense_Mutation SNP T T C novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 ZFX 7543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24197791 24197791 + Missense_Mutation SNP G G A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 ZNF415 55786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53612726 53612726 + Missense_Mutation SNP T T C novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 ZSCAN20 7579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33956856 33956856 + Missense_Mutation SNP C C A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 CACNA1H 8912 broad.mit.edu 37 16 1257814 1257814 + Silent SNP C T T novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 NCRNA00164 0 broad.mit.edu 37 2 132912316 132912316 + RNA SNP G A A novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 PDXDC2 0 broad.mit.edu 37 16 70058574 70058574 + Splice_Site SNP C G G novel TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 Unknown 0 broad.mit.edu 37 22 18844763 18844763 + RNA SNP T C C rs1064849 bycluster TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28 Unknown 0 broad.mit.edu 37 22 18844888 18844888 + RNA SNP A G G rs495165 TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 553cbe18-6dd3-4b34-b7fe-96a6dd2e6943 6df74e94-bcef-4451-93d9-381eb5804f28