Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC6 368 broad.mit.edu;ucsc.edu 37 16 16244592 16244592 + Missense_Mutation SNP G T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ABO 28 hgsc.bcm.edu 37 9 136131622 136131622 + Frame_Shift_Del DEL T T - rs56284703 TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ALG8 79053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77812070 77812070 + Missense_Mutation SNP C C A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 AXIN1 8312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 396290 396290 + Missense_Mutation SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 AXIN1 8312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 396291 396291 + Silent SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 BACH1 571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30693729 30693729 + Missense_Mutation SNP A A G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 BRWD1 54014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40590148 40590148 + Missense_Mutation SNP A A G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 C17orf97 400566 hgsc.bcm.edu 37 17 263652 263652 + Missense_Mutation SNP G G A rs111543298 TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 CHD4 1108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6688041 6688041 + Missense_Mutation SNP T T G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 DGKG 1608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 185882703 185882703 + Missense_Mutation SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 DHX34 9704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47856562 47856562 + Missense_Mutation SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 DHX36 170506 hgsc.bcm.edu;ucsc.edu 37 3 153994678 153994678 + Missense_Mutation SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 EDIL3 10085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 83356228 83356228 + Missense_Mutation SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ERBB3 2065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56487573 56487573 + Silent SNP A A G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FAM135A 57579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71186969 71186969 + Missense_Mutation SNP T T G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FAM158A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24608257 24608257 + Missense_Mutation SNP G G C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FAM169A 26049 hgsc.bcm.edu 37 5 74091886 74091887 + Frame_Shift_Ins INS - - G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FAM171B 165215 hgsc.bcm.edu 37 2 187559050 187559050 + Silent SNP A A G rs75768569 TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FAM193A 8603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2674032 2674032 + Missense_Mutation SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FAM90A1 55138 hgsc.bcm.edu 37 12 8374781 8374782 + In_Frame_Ins INS - - ACG rs71265055 bycluster;by1000genomes TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FBXL4 26235 broad.mit.edu;hgsc.bcm.edu 37 6 99365256 99365256 + Silent SNP A A C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FLRT3 23767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 14307334 14307334 + Silent SNP G G C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FLT4 2324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180056415 180056415 + Missense_Mutation SNP T T G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FN1 2335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216262451 216262451 + Missense_Mutation SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 FRMD7 90167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 131212433 131212433 + Missense_Mutation SNP T T G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 GABRR1 2569 hgsc.bcm.edu 37 6 89888680 89888680 + Missense_Mutation SNP C C G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 GINS3 64785 hgsc.bcm.edu 37 16 58438630 58438630 + Frame_Shift_Del DEL C C - novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 GPR78 27201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8584304 8584304 + Missense_Mutation SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 HOXB1 3211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46608210 46608210 + Silent SNP G G T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 HRC 3270 hgsc.bcm.edu 37 19 49657177 49657178 + Frame_Shift_Ins INS - - G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 IL16 3603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81589274 81589274 + Silent SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ILF3 3609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10799269 10799269 + Silent SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KIAA1217 56243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 24834980 24834980 + Silent SNP C C A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KIF13A 63971 broad.mit.edu;ucsc.edu 37 6 17898399 17898399 + Silent SNP C T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KIF2B 84643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 51900736 51900736 + Missense_Mutation SNP A A C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KLC1 3831 hgsc.bcm.edu;ucsc.edu 37 14 104129226 104129226 + Silent SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KRT1 3848 broad.mit.edu;ucsc.edu 37 12 53069018 53069018 + Missense_Mutation SNP C T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KRT85 3891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52756641 52756641 + Nonsense_Mutation SNP G G T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KRTAP13-2 337959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31744251 31744251 + Missense_Mutation SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 KRTAP4-1 85285 hgsc.bcm.edu 37 17 39340796 39340852 + Frame_Shift_Del DEL CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG - novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 LATS1 9113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150004564 150004564 + Missense_Mutation SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 LONRF3 79836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118140161 118140161 + Missense_Mutation SNP A A G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 LRRC3B 116135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 26751684 26751684 + Missense_Mutation SNP C C A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 MAN2C1 4123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75650634 75650634 + Missense_Mutation SNP C C G rs150703780 TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 MFAP3 4238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153432673 153432673 + Silent SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104719411 104719411 + Splice_Site SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 MORC4 79710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106186437 106186437 + Splice_Site SNP T T A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 MYO3B 140469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 171243748 171243748 + Missense_Mutation SNP A A G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ODZ3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 183714119 183714119 + Silent SNP C C G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 OR51D1 390038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4661302 4661302 + Missense_Mutation SNP G G T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PAAF1 80227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73638349 73638349 + Missense_Mutation SNP A A T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PBRM1 55193 hgsc.bcm.edu 37 3 52610639 52610640 + Frame_Shift_Del DEL CT CT - novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134072133 134072133 + Missense_Mutation SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PCDH9 5101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 67205519 67205519 + Missense_Mutation SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PCDHA3 56145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140182765 140182765 + Silent SNP C C A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PCDHA7 56141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140216218 140216218 + Missense_Mutation SNP C C A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PCDHB2 56133 hgsc.bcm.edu 37 5 140476000 140476000 + Silent SNP G G A rs141231979 byfrequency;alternate_allele TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PLAU 5328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75673067 75673067 + Nonsense_Mutation SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PLEKHA5 54477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 19410396 19410396 + Silent SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PLXNB1 5364 broad.mit.edu;hgsc.bcm.edu 37 3 48461035 48461035 + Missense_Mutation SNP A A G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PRKACG 5568 broad.mit.edu;hgsc.bcm.edu 37 9 71628614 71628614 + Missense_Mutation SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 RGS3 5998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116299108 116299108 + Missense_Mutation SNP C C G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ROBO1 6091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 78706388 78706388 + Missense_Mutation SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ROBO1 6091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 78706390 78706390 + Nonsense_Mutation SNP G G T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 SEC24B 10427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 110402835 110402835 + Missense_Mutation SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 SLC7A1 6541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 30091722 30091722 + Missense_Mutation SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 SLIT3 6586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 168114104 168114104 + Missense_Mutation SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 TSPAN19 144448 broad.mit.edu;ucsc.edu 37 12 85421790 85421790 + Missense_Mutation SNP G A A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179484439 179484439 + Silent SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179504809 179504809 + Silent SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 TTYH2 94015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72249930 72249930 + Silent SNP C C T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188202 10188202 + Frame_Shift_Del DEL C C - novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 WDR5B 54554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122134164 122134164 + Missense_Mutation SNP T T C novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168101917 168101917 + Nonsense_Mutation SNP A A T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ZFP28 140612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57065721 57065721 + Missense_Mutation SNP C C A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ZFYVE27 118813 broad.mit.edu;hgsc.bcm.edu 37 10 99512825 99512825 + Missense_Mutation SNP G G A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ZNF438 220929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31138528 31138528 + Missense_Mutation SNP A A G novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 ATP1B1 481 broad.mit.edu 37 1 169076145 169076145 + RNA SNP C T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 BCL9L 283149 broad.mit.edu 37 11 118774003 118774014 + In_Frame_Del DEL CGCCCCCGCCCC - - novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CGCCCCCGCCCC CGCCCCCGCCCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 GOLGA6L5 374650 broad.mit.edu 37 15 85055754 85055756 + RNA DEL CTC - - novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 MED23 9439 broad.mit.edu 37 6 131931276 131931276 + Silent SNP G T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 NR4A3 8013 broad.mit.edu 37 9 102591255 102591255 + Missense_Mutation SNP G A A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 OR2A1 346528 broad.mit.edu 37 7 143929685 143929685 + Silent SNP G T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 OR8S1 341568 broad.mit.edu 37 12 48921863 48921863 + Missense_Mutation SNP G A A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 OTUD6A 139562 broad.mit.edu 37 X 69282742 69282742 + Missense_Mutation SNP G T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 PABPN1 8106 broad.mit.edu 37 14 23790967 23790969 + In_Frame_Del DEL GAG - - novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 SEC14L5 9717 broad.mit.edu 37 16 5050877 5050877 + Missense_Mutation SNP G A A novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60 Unknown 0 broad.mit.edu 37 16 32077410 32077410 + RNA SNP G T T novel TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7096085b-cd5b-4cd1-8957-a6adcf7e818a 79d2b099-9648-4699-a5c3-17e90c5aed60