Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACIN1 22985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23533399 23533399 + Missense_Mutation SNP G G C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 ANKS4B 257629 broad.mit.edu;ucsc.edu 37 16 21261470 21261470 + Missense_Mutation SNP G A A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 AQP12B 653437 hgsc.bcm.edu 37 2 241621800 241621800 + Frame_Shift_Del DEL C C - novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 ATP13A4 84239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193188727 193188727 + Missense_Mutation SNP C C A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13605133 13605133 + Missense_Mutation SNP C C T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 CHRD 8646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184102984 184102984 + Silent SNP G G T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 CNTN6 27255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 1363473 1363473 + Missense_Mutation SNP A A G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 CSNK1G3 1456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122911473 122911473 + Silent SNP A A G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 CTDP1 9150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 77477938 77477938 + Missense_Mutation SNP A A T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 CYP4X1 260293 broad.mit.edu;ucsc.edu 37 1 47498916 47498916 + Missense_Mutation SNP A C C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 DCAF4L2 138009 broad.mit.edu;ucsc.edu 37 8 88885732 88885732 + Silent SNP G A A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 DNAJC11 55735 broad.mit.edu;ucsc.edu 37 1 6741001 6741001 + Nonsense_Mutation SNP G A A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 FAM75D1 0 broad.mit.edu;hgsc.bcm.edu 37 9 84607804 84607804 + Missense_Mutation SNP A A T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 GABRB1 2560 broad.mit.edu;ucsc.edu 37 4 47033947 47033947 + Missense_Mutation SNP A C C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 GCN1L1 10985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120586152 120586152 + Splice_Site SNP T T C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 ITGB4 3691 broad.mit.edu;hgsc.bcm.edu 37 17 73729634 73729634 + Silent SNP G G A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 KIAA0146 23514 broad.mit.edu;ucsc.edu 37 8 48309113 48309113 + Silent SNP T C C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 KIAA2013 90231 hgsc.bcm.edu 37 1 11985493 11985494 + Frame_Shift_Del DEL TC TC - novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 LCT 3938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 136566891 136566891 + Missense_Mutation SNP G G T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 LETM1 3954 hgsc.bcm.edu 37 4 1823987 1823988 + Frame_Shift_Ins INS - - C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170060531 170060531 + Nonsense_Mutation SNP C C A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176637818 176637818 + Silent SNP A A C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 NUP214 8021 broad.mit.edu;hgsc.bcm.edu 37 9 134077067 134077067 + Missense_Mutation SNP G G C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643348 52643348 + Nonsense_Mutation SNP G G A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134071487 134071487 + Missense_Mutation SNP A A C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 RNF219 79596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 79212988 79212988 + Missense_Mutation SNP T T G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 RYR1 6261 hgsc.bcm.edu 37 19 38990455 38990455 + Missense_Mutation SNP G G A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 SCCPDH 51097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 246923346 246923346 + Missense_Mutation SNP A A T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 ST8SIA4 7903 hgsc.bcm.edu;ucsc.edu 37 5 100147701 100147701 + Frame_Shift_Del DEL T T - novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 THSD4 79875 broad.mit.edu;ucsc.edu 37 15 72039333 72039333 + Silent SNP C T T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 TRAPPC9 83696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141415691 141415691 + Silent SNP A A G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 TRIM6 117854 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5624933 5624933 + Missense_Mutation SNP T T G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61571006 61571006 + Missense_Mutation SNP T T C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191480 10191480 + Missense_Mutation SNP T T C rs121913346 alternate_allele TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191481 10191481 + Silent SNP G G C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 XYLT2 64132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48433278 48433278 + Missense_Mutation SNP G G A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 ZNF44 51710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12383395 12383395 + Missense_Mutation SNP G G A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 CBR1 873 broad.mit.edu 37 21 37444758 37444758 + Missense_Mutation SNP G A A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 CTDP1 9150 broad.mit.edu 37 18 77477956 77477956 + Missense_Mutation SNP C T T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 GLS2 27165 broad.mit.edu 37 12 56865561 56865561 + Missense_Mutation SNP C A A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 LOC728989 728989 broad.mit.edu 37 1 146493351 146493351 + Missense_Mutation SNP A G G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 OR56A5 390084 broad.mit.edu 37 11 5988973 5988973 + Missense_Mutation SNP A G G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 RALGPS2 55103 broad.mit.edu 37 1 178753614 178753614 + Missense_Mutation SNP C A A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 SDHAP3 728609 broad.mit.edu 37 5 1574406 1574406 + RNA SNP T C C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 SEC14L1 6397 broad.mit.edu 37 17 75209464 75209464 + Silent SNP C T T novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 UGT2A1 10941 broad.mit.edu 37 4 70455274 70455274 + Missense_Mutation SNP C T T rs150861593 byfrequency TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 ZMYM3 9203 broad.mit.edu 37 X 70472956 70472956 + Silent SNP A G G novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 ZNF136 7695 broad.mit.edu 37 19 12298092 12298092 + Missense_Mutation SNP G A A novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2 BAI3 577 broad.mit.edu 37 6 69349081 69349081 + Missense_Mutation SNP T C C novel TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx 792c9867-ceea-4520-bbb7-5dabe290664f c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2