Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48314761 48314761 + Missense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ABCC5 10057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 183669339 183669339 + Missense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ACAN 176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89382103 89382103 + Missense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 AFF3 3899 broad.mit.edu;ucsc.edu 37 2 100210335 100210340 + In_Frame_Del DEL GGCTGA - - novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 GGCTGA GGCTGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 AMPH 273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38530710 38530710 + Missense_Mutation SNP T T A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197087083 197087083 + Silent SNP A A G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ASXL1 171023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31023504 31023504 + Nonsense_Mutation SNP G G T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ATG2B 55102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 96789061 96789061 + Missense_Mutation SNP T T C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 BANK1 55024 hgsc.bcm.edu;ucsc.edu 37 4 102751231 102751231 + Frame_Shift_Del DEL A A - novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 C17orf66 256957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34190111 34190111 + Missense_Mutation SNP A A G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 C1orf129 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 170964596 170964596 + Missense_Mutation SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 C2orf71 388939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29295510 29295510 + Missense_Mutation SNP T T G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 C9orf93 0 hgsc.bcm.edu 37 9 15744426 15744427 + Frame_Shift_Ins INS - - G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CACNA1E 777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 181549889 181549889 + Missense_Mutation SNP G G T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CADM3 57863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159170640 159170640 + Silent SNP C C T rs143855176 TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CD79B 974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62009607 62009607 + Silent SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CDH20 28316 broad.mit.edu;hgsc.bcm.edu 37 18 59195205 59195205 + Silent SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CHAD 1101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48545894 48545894 + Missense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CYLC1 1538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 83128044 83128044 + Missense_Mutation SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CYP2B6 1555 broad.mit.edu;hgsc.bcm.edu 37 19 41515984 41515984 + Missense_Mutation SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 DENND4A 10260 broad.mit.edu;hgsc.bcm.edu 37 15 65954291 65954291 + Missense_Mutation SNP A A C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 DMTF1 9988 broad.mit.edu;hgsc.bcm.edu 37 7 86811528 86811528 + RNA SNP C C G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ELP2 55250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33750159 33750159 + Missense_Mutation SNP G G T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 EP400 57634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 132491323 132491323 + Missense_Mutation SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 EPHB2 2048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 23191446 23191446 + Silent SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 FAM19A1 407738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 68466568 68466568 + Missense_Mutation SNP A A G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 FARP2 9855 hgsc.bcm.edu;ucsc.edu 37 2 242380935 242380935 + Missense_Mutation SNP C C A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 GCFC1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34117899 34117899 + Missense_Mutation SNP A A C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 GNAI2 2771 broad.mit.edu;hgsc.bcm.edu 37 3 50290461 50290461 + Silent SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 GOLT1A 127845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204170926 204170926 + Missense_Mutation SNP G G A rs150924607 by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 GPR174 84636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78426732 78426732 + Silent SNP C C A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 HCN3 57657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155252388 155252388 + Silent SNP T T C rs140564885 alternate_allele TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 HDAC9 9734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 18625053 18625053 + Missense_Mutation SNP C C A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 HERC2 8924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28501377 28501377 + Silent SNP C C T rs139718674 by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 IL33 90865 hgsc.bcm.edu 37 9 6256088 6256088 + Missense_Mutation SNP A A T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 KIF12 113220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116859632 116859632 + Missense_Mutation SNP G G C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 LPIN3 64900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39987126 39987126 + Silent SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57600464 57600464 + Silent SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 LRRIQ1 84125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 85450294 85450294 + Missense_Mutation SNP A A C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 LTBP3 4054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65318874 65318874 + Silent SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 MCF2L2 23101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 183035915 183035915 + Missense_Mutation SNP T T C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 MLF2 8079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6859423 6859423 + Missense_Mutation SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 MOSPD3 64598 broad.mit.edu;hgsc.bcm.edu 37 7 100211116 100211116 + Missense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 MUC17 140453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100681776 100681776 + Missense_Mutation SNP C C A rs143338962 alternate_allele TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C C A C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 MUT 4594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 49419319 49419319 + Missense_Mutation SNP T T C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 NIN 51199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 51259502 51259502 + Silent SNP A A C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 OR2T4 127074 broad.mit.edu;hgsc.bcm.edu 37 1 248525256 248525256 + Nonsense_Mutation SNP C C A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 PCBP1 5093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70315104 70315104 + Missense_Mutation SNP G G T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 PDCD6IP 10015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33905544 33905544 + Missense_Mutation SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 PDS5A 23244 broad.mit.edu;hgsc.bcm.edu 37 4 39851255 39851255 + Missense_Mutation SNP A A G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 PLCB2 5330 broad.mit.edu;hgsc.bcm.edu 37 15 40594520 40594520 + Nonsense_Mutation SNP T T A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 PRDM13 59336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100062550 100062550 + Missense_Mutation SNP A A G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 PTBP2 58155 broad.mit.edu;ucsc.edu 37 1 97236294 97236294 + Missense_Mutation SNP G C C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 RABGAP1 23637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125760994 125760994 + Nonsense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36096963 36096963 + Nonsense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 RBM33 155435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 155537939 155537939 + Silent SNP T T G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 RTKN2 219790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63958099 63958099 + Silent SNP T T C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33988670 33988670 + Silent SNP T T C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 SDK1 221935 broad.mit.edu;hgsc.bcm.edu 37 7 4011189 4011189 + Silent SNP G G T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47098412 47098413 + Frame_Shift_Ins INS - - AT novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - - AT - - Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 SLC38A10 124565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79220707 79220707 + Silent SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 SND1 27044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127341301 127341301 + Silent SNP T T C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16256120 16256120 + Missense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 TPSAB1 7177 broad.mit.edu;hgsc.bcm.edu 37 16 1291647 1291647 + Missense_Mutation SNP T T C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 TRAF7 84231 broad.mit.edu;ucsc.edu 37 16 2225568 2225568 + Missense_Mutation SNP G A A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 TRIM78P 117852 broad.mit.edu;hgsc.bcm.edu 37 11 5686705 5686705 + RNA SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 TTC29 83894 broad.mit.edu;hgsc.bcm.edu 37 4 147830304 147830304 + Missense_Mutation SNP C C T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 TUBGCP6 85378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50660936 50660936 + Nonsense_Mutation SNP G G A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 UGT2B7 7364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69962460 69962460 + Missense_Mutation SNP T T G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 XRRA1 143570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74555233 74555233 + Missense_Mutation SNP A A G novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ZMYND8 23613 broad.mit.edu;hgsc.bcm.edu 37 20 45927547 45927547 + Missense_Mutation SNP G G T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ACBD5 91452 broad.mit.edu 37 10 27529390 27529390 + Silent SNP G A A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ADAM6 8755 broad.mit.edu 37 14 106919168 106919168 + RNA DEL C - - rs139643696 bycluster;by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 CACNA1C 775 broad.mit.edu 37 12 2800179 2800179 + Silent SNP G A A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 HIVEP3 59269 broad.mit.edu 37 1 41976454 41976454 + Missense_Mutation SNP C A A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 L1CAM 3897 broad.mit.edu 37 X 153130647 153130647 + Missense_Mutation SNP G A A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 MAP7D1 55700 broad.mit.edu 37 1 36643701 36643703 + In_Frame_Del DEL AGA - - rs141305015 bycluster;by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 AGA AGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 MRC2 9902 broad.mit.edu 37 17 60743545 60743545 + Missense_Mutation SNP C T T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 OSBP2 23762 broad.mit.edu 37 22 31091334 31091334 + Silent SNP G A A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 POU4F2 5458 broad.mit.edu 37 4 147560212 147560212 + Translation_Start_Site SNP C A A novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 SLC12A9 56996 broad.mit.edu 37 7 100459452 100459452 + Missense_Mutation SNP G C C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 SPIRE2 84501 broad.mit.edu 37 16 89916879 89916880 + In_Frame_Ins INS - GAG GAG novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ZADH2 284273 broad.mit.edu 37 18 72920998 72920999 + Frame_Shift_Ins INS - C C novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2 ZZEF1 23140 broad.mit.edu 37 17 3984690 3984690 + Missense_Mutation SNP C T T novel TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae b50f962c-326f-4b05-a0a2-76015c7e84b2