Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AKT2 208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40742002 40742002 + Missense_Mutation SNP C C G novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 BCL11B 64919 broad.mit.edu;hgsc.bcm.edu 37 14 99640783 99640783 + Missense_Mutation SNP G G A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 CDHR5 53841 hgsc.bcm.edu 37 11 618965 618967 + In_Frame_Del DEL GTT GTT - novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 GTT GTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 CDSN 1041 broad.mit.edu;hgsc.bcm.edu 37 6 31088189 31088189 + Missense_Mutation SNP G G A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 CES1 1066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55844874 55844874 + Missense_Mutation SNP C C A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 CFH 3075 broad.mit.edu;hgsc.bcm.edu 37 1 196642129 196642129 + Missense_Mutation SNP G G T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 CFH 3075 broad.mit.edu;hgsc.bcm.edu 37 1 196642130 196642130 + Missense_Mutation SNP A A T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 COMMD5 28991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 146076470 146076470 + Missense_Mutation SNP A A T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 DDX50 79009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70706192 70706192 + Missense_Mutation SNP T T C novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 T T T C T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 32834668 32834668 + Silent SNP A A G novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 ERBB3 2065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56487323 56487323 + Missense_Mutation SNP G G A rs149951770 TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 FAM170A 340069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118970217 118970217 + Missense_Mutation SNP C C A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 H2AFY2 55506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71835428 71835428 + Missense_Mutation SNP G G C novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 ITGA11 22801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68628034 68628034 + Splice_Site SNP C C A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 KIAA1543 0 broad.mit.edu;hgsc.bcm.edu 37 19 7677733 7677733 + Missense_Mutation SNP G G T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 KIF1C 10749 hgsc.bcm.edu 37 17 4926877 4926879 + In_Frame_Del DEL TCG TCG - novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 TCG TCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 MUC7 4589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71346715 71346715 + Missense_Mutation SNP C C T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 NCOA6 23054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33328813 33328813 + Silent SNP C C A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 PCDHA10 56139 broad.mit.edu;ucsc.edu 37 5 140236864 140236864 + Missense_Mutation SNP G T T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 PHLPP1 23239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 60497298 60497298 + Missense_Mutation SNP G G A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 PTGS2 5743 broad.mit.edu;hgsc.bcm.edu 37 1 186646956 186646956 + Missense_Mutation SNP T T G novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 QSER1 79832 hgsc.bcm.edu;ucsc.edu 37 11 32954712 32954712 + Frame_Shift_Del DEL A A - novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 RTKN2 219790 broad.mit.edu;hgsc.bcm.edu 37 10 63999439 63999439 + Silent SNP G G T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 RTKN2 219790 broad.mit.edu;hgsc.bcm.edu 37 10 63999440 63999440 + Missense_Mutation SNP A A T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 RUNX3 864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 25256117 25256117 + Silent SNP C C A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 SEC23B 10483 hgsc.bcm.edu;ucsc.edu 37 20 18492907 18492908 + Frame_Shift_Del DEL TC TC - novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47129722 47129722 + Nonsense_Mutation SNP C C A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 TAS2R60 338398 broad.mit.edu;ucsc.edu 37 7 143140757 143140757 + Nonsense_Mutation SNP C G G novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 THSD7B 80731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 138414712 138414712 + Missense_Mutation SNP G G T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 TM4SF19 116211 broad.mit.edu;ucsc.edu 37 3 196053866 196053866 + Nonsense_Mutation SNP C T T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 TREML4 285852 hgsc.bcm.edu;ucsc.edu 37 6 41196691 41196691 + Frame_Shift_Del DEL G G - novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 WDR52 55779 hgsc.bcm.edu;ucsc.edu 37 3 113098217 113098217 + Missense_Mutation SNP G G A rs58988763 bycluster;byfrequency;by1000genomes TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 XKR6 286046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11058309 11058309 + Silent SNP G G A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 ZNF594 84622 hgsc.bcm.edu 37 17 5085789 5085790 + Frame_Shift_Ins INS - - CC novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 ZXDA 7789 hgsc.bcm.edu;ucsc.edu 37 X 57935826 57935828 + In_Frame_Del DEL GGT GGT - novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 GGT GGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3920721 3920721 + Missense_Mutation SNP T T G novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 C1orf52 148423 broad.mit.edu 37 1 85725279 85725279 + Missense_Mutation SNP G A A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 ETV4 2118 broad.mit.edu 37 17 41610308 41610308 + Splice_Site SNP C T T novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 LOC650368 650368 broad.mit.edu 37 11 3427885 3427885 + RNA SNP A G G novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 alternate_allele TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 Unknown 0 broad.mit.edu 37 1 243251423 243251423 + RNA DEL A - - novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9 TMPRSS13 84000 broad.mit.edu 37 11 117785150 117785150 + Silent SNP G A A novel TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx 09bfe7ac-7667-4a3e-aedd-b621f55fb635 c6972bea-cb24-44f1-a9fc-16a34fef03c9