Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID APBA2 321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 29346528 29346528 + Silent SNP G G A novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 ASPHD2 57168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26830026 26830026 + Missense_Mutation SNP A A G novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 BSN 8927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49662500 49662500 + Missense_Mutation SNP A A G rs140305957 byfrequency TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 C17orf101 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80369360 80369360 + Silent SNP G G T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 CEP350 9857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180063129 180063129 + Missense_Mutation SNP G G T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94038888 94038888 + Missense_Mutation SNP G G T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 CSNK2B 1460 hgsc.bcm.edu 37 6 31637658 31637659 + Frame_Shift_Del DEL CC CC - novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 CC CC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 DENND2C 163259 broad.mit.edu;hgsc.bcm.edu 37 1 115166246 115166246 + Missense_Mutation SNP C C A novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 HAPLN1 1404 broad.mit.edu;hgsc.bcm.edu 37 5 82940357 82940357 + Silent SNP G G T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 MARK2 2011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63670173 63670173 + Silent SNP G G T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 MYO1B 4430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192250811 192250811 + Splice_Site SNP G G T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 NAPRT1 93100 broad.mit.edu;hgsc.bcm.edu 37 8 144657686 144657686 + Missense_Mutation SNP C C A rs148462517 byfrequency;alternate_allele TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 OR10G4 390264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123887007 123887007 + Silent SNP C C T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 PGLYRP3 114771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153277480 153277480 + Missense_Mutation SNP G G C novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G G C G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 SELP 6403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169566355 169566355 + Missense_Mutation SNP G G T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 SREBF1 6720 hgsc.bcm.edu 37 17 17716753 17716754 + Frame_Shift_Ins INS - - C novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 UACA 55075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 70961034 70961034 + Missense_Mutation SNP T T G novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 11985089 11985089 + Missense_Mutation SNP C C T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68274120 68274120 + Missense_Mutation SNP C C T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 ZNF382 84911 hgsc.bcm.edu;ucsc.edu 37 19 37118014 37118015 + Frame_Shift_Ins INS - - A novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 LOC442421 0 broad.mit.edu 37 9 66499867 66499867 + Missense_Mutation SNP T C C rs7862419 bycluster;byfrequency;by2hit2allele TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 PBX2 5089 broad.mit.edu 37 6 32156280 32156280 + Silent SNP G T T novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 PRR12 57479 broad.mit.edu 37 19 50100809 50100810 + Frame_Shift_Del DEL CT - - novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 TSC22D1 8848 broad.mit.edu 37 13 45008837 45008837 + Silent SNP A G G novel TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6 VHL 7428 broad.mit.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C A A rs5030826 TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0e99fdd6-c16d-41ce-98a7-accd55ec1e4a 058d79f1-cfc9-486c-9be6-b42902cb74f6