Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AKAP17A 8227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1713017 1713017 + Missense_Mutation SNP A A G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73979600 73979600 + Missense_Mutation SNP C C G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ASB6 140459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 132401522 132401522 + Missense_Mutation SNP A A G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ATP8B1 5205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55319399 55319399 + Silent SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52437782 52437782 + Nonsense_Mutation SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 BMP1 649 hgsc.bcm.edu 37 8 22037969 22037969 + Nonsense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 C19orf47 126526 broad.mit.edu;hgsc.bcm.edu 37 19 40827909 40827909 + Silent SNP G G T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 C1orf112 55732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169773348 169773348 + Missense_Mutation SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 C20orf43 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 55049773 55049773 + Missense_Mutation SNP C C A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 CAD 790 hgsc.bcm.edu;ucsc.edu 37 2 27454852 27454853 + In_Frame_Ins INS - - GGA novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 CCDC105 126402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15132495 15132495 + Missense_Mutation SNP A A G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 CDH8 1006 broad.mit.edu;hgsc.bcm.edu 37 16 61851427 61851427 + Silent SNP C C A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 CDKN2AIP 55602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184367368 184367368 + Silent SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 CMC1 152100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 28361101 28361101 + Missense_Mutation SNP A A G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 DDTL 100037417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24313566 24313566 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 DNMT1 1786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10262203 10262203 + Missense_Mutation SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 EAF2 55840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121591511 121591511 + Silent SNP C C A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ESRP1 54845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95680227 95680227 + Missense_Mutation SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 EXOC4 60412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 133689775 133689775 + Missense_Mutation SNP A A C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 FANCF 2188 broad.mit.edu;ucsc.edu 37 11 22646676 22646676 + Missense_Mutation SNP G C C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 FRMD4A 55691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13699459 13699459 + Silent SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 FYN 2534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111983021 111983021 + Missense_Mutation SNP G G T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 GABRA1 2554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161302567 161302567 + Silent SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 GDF9 2661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132197841 132197841 + Missense_Mutation SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 GFRA3 2676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137593484 137593484 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 GUSB 2990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 65439619 65439619 + Missense_Mutation SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26540497 26540497 + Missense_Mutation SNP G G T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 KCNA1 3736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 5021702 5021702 + Missense_Mutation SNP G G T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 KIF4A 24137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69622533 69622533 + Silent SNP T T C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 KLRAQ1 0 broad.mit.edu;hgsc.bcm.edu 37 2 48681713 48681713 + RNA SNP T T C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 KRT82 3888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52788815 52788815 + Missense_Mutation SNP G G A rs139996519 TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 LST-3TM12 0 broad.mit.edu;ucsc.edu 37 12 21172281 21172281 + Missense_Mutation SNP T C C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 MAP1LC3B2 643246 broad.mit.edu;hgsc.bcm.edu 37 12 117013990 117013990 + Frame_Shift_Del DEL G G - novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 MLL 4297 hgsc.bcm.edu;ucsc.edu 37 11 118348895 118348896 + Frame_Shift_Ins INS - - T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 MOCOS 55034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33785102 33785102 + Missense_Mutation SNP T T A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 MOV10L1 54456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50555733 50555733 + Missense_Mutation SNP A A C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9067149 9067149 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 MYL6B 140465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56548877 56548877 + Missense_Mutation SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 NCOA3 8202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46277767 46277767 + Missense_Mutation SNP C C G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 NDC80 10403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2616501 2616501 + Silent SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 NR3C1 2908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 142779613 142779613 + Silent SNP A A C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ODZ2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 167687305 167687305 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 OR2G2 81470 broad.mit.edu;ucsc.edu 37 1 247752478 247752478 + Missense_Mutation SNP C A A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 OR2W3 343171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248059809 248059809 + Silent SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PDE1B 5153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54962995 54962995 + Silent SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PDE2A 5138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 72300797 72300797 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PIAS1 8554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68434675 68434675 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PKDREJ 10343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46655753 46655753 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PLD3 23646 hgsc.bcm.edu;ucsc.edu 37 19 40876075 40876075 + Frame_Shift_Del DEL G G - novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PRELID1 27166 broad.mit.edu;hgsc.bcm.edu 37 5 176731056 176731056 + Missense_Mutation SNP C C A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PRPSAP1 5635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74307778 74307778 + Missense_Mutation SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171510332 171510332 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 RIN3 79890 hgsc.bcm.edu;ucsc.edu 37 14 93043822 93043824 + Frame_Shift_Del DEL AGT AGT - novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 AGT AGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ROM1 6094 hgsc.bcm.edu 37 11 62381083 62381083 + Frame_Shift_Del DEL T T - novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 RTL1 388015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 101351082 101351082 + Missense_Mutation SNP T T C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 SAMD3 154075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 130465867 130465867 + Missense_Mutation SNP T T A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 SLAMF7 57823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160719769 160719769 + Missense_Mutation SNP A A G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 SLC29A1 2030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44198152 44198152 + Missense_Mutation SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 SLC47A2 146802 hgsc.bcm.edu;ucsc.edu 37 17 19606416 19606416 + Frame_Shift_Del DEL A A - novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 STC2 8614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 172755100 172755100 + Missense_Mutation SNP C C A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 TAF4B 6875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 23872291 23872291 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 TBC1D9B 23061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179301968 179301968 + Missense_Mutation SNP A A T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 THADA 63892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43800089 43800089 + Missense_Mutation SNP C C A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 TIE1 7075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43773140 43773140 + Missense_Mutation SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 TM9SF3 56889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98312748 98312748 + Silent SNP A A T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 TMEM184C 55751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148545244 148545244 + Missense_Mutation SNP G G A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 UACA 55075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 70960389 70960389 + Missense_Mutation SNP T T G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 UBE2L3 7332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21968852 21968852 + RNA SNP C C T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33501331 33501331 + Missense_Mutation SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 USP25 29761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 17197352 17197352 + Missense_Mutation SNP C C G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191470 10191470 + Splice_Site SNP G C C rs5030817 alternate_allele TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ZGPAT 84619 broad.mit.edu;ucsc.edu 37 20 62366756 62366756 + Missense_Mutation SNP G C C rs17855481 bycluster;alternate_allele TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ZNF438 220929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31134379 31134379 + Silent SNP T T C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ZNF530 348327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58118103 58118103 + Missense_Mutation SNP G G C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ZNF625 90589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12256409 12256409 + Silent SNP C C T rs188764180 by1000genomes TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 ZRANB1 54764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 126662867 126662867 + Missense_Mutation SNP T T A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 DUS3L 56931 broad.mit.edu 37 19 5785681 5785681 + Missense_Mutation SNP C A A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 FBLN2 2199 broad.mit.edu 37 3 13649672 13649672 + Missense_Mutation SNP A G G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 GDPD5 81544 broad.mit.edu 37 11 75160647 75160647 + Silent SNP C T T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 LOC96610 96610 broad.mit.edu 37 22 22677327 22677327 + Splice_Site SNP A G G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 NEB 4703 broad.mit.edu 37 2 152346999 152346999 + Missense_Mutation SNP C T T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 SCARF1 8578 broad.mit.edu 37 17 1540047 1540047 + Missense_Mutation SNP C T T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 TDRD6 221400 broad.mit.edu 37 6 46656688 46656688 + Nonsense_Mutation SNP G T T novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 UHRF1BP1L 23074 broad.mit.edu 37 12 100496634 100496634 + Missense_Mutation SNP G C C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99 Unknown 0 broad.mit.edu 37 X 155254735 155254735 + Missense_Mutation SNP C G G novel TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 93c714f8-acea-4550-92fe-aad4aad65ac9 fe1f491c-9dd3-4d5b-9c51-3e3554674e99