Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AKAP9 10142 hgsc.bcm.edu 37 7 91652178 91652179 + In_Frame_Ins INS - - AAC rs10644111 bycluster;by1000genomes TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 BCHE 590 hgsc.bcm.edu;ucsc.edu 37 3 165547909 165547915 + Frame_Shift_Del DEL CTTCATT CTTCATT - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 CTTCATT CTTCATT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 C14orf149 0 hgsc.bcm.edu;ucsc.edu 37 14 59939728 59939729 + Frame_Shift_Ins INS - - ATAAA novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CHRNE 1145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4804298 4804298 + Silent SNP G G A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CLTC 1213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57733326 57733327 + Frame_Shift_Ins INS - - T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CSDA 8531 hgsc.bcm.edu 37 12 10862578 10862579 + Frame_Shift_Ins INS - - C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 114448936 114448936 + Missense_Mutation SNP C C A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80136837 80136837 + Silent SNP C C A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CYTH2 9266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48977501 48977501 + Missense_Mutation SNP G G A rs1804728 alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 DLGAP5 9787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55625310 55625310 + Silent SNP T T C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 DPY19L1 23333 broad.mit.edu;hgsc.bcm.edu 37 7 34981390 34981390 + Missense_Mutation SNP A A G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu 37 14 102466737 102466737 + Splice_Site SNP G G A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 EFCAB4B 84766 hgsc.bcm.edu 37 12 3806145 3806147 + In_Frame_Del DEL CCT CCT - rs67819433 TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 CCT CCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 EHD3 30845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 31484489 31484489 + Silent SNP G G A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 GCOM1 145781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57913819 57913819 + Missense_Mutation SNP T T C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 GPR115 221393 hgsc.bcm.edu;ucsc.edu 37 6 47680115 47680115 + Frame_Shift_Del DEL T T - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 GUCY2D 3000 broad.mit.edu;ucsc.edu 37 17 7909785 7909785 + Silent SNP T A A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 ITPKB 3707 broad.mit.edu;hgsc.bcm.edu 37 1 226834969 226834969 + Silent SNP G G A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 KCNC1 3746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17793714 17793714 + Missense_Mutation SNP T T C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 KCNQ2 3785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62038115 62038115 + Missense_Mutation SNP A A G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 KIF3B 9371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30918079 30918079 + Missense_Mutation SNP G G A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 KRT4 3851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53207418 53207418 + Missense_Mutation SNP T T C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 KRT76 51350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53162498 53162498 + Silent SNP C C T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 LRRC19 64922 hgsc.bcm.edu 37 9 26998211 26998211 + Frame_Shift_Del DEL T T - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 MIOS 54468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 7636022 7636022 + Silent SNP C C T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 NCOR2 9612 broad.mit.edu;ucsc.edu 37 12 124968161 124968161 + Missense_Mutation SNP C A A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117681127 117681127 + Silent SNP C C T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 NYNRIN 57523 hgsc.bcm.edu;ucsc.edu 37 14 24885703 24885708 + In_Frame_Del DEL GCAGGA GCAGGA - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 GCAGGA GCAGGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PCDHB7 56129 broad.mit.edu;hgsc.bcm.edu 37 5 140554161 140554161 + Missense_Mutation SNP C C T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PCNXL3 399909 broad.mit.edu;hgsc.bcm.edu 37 11 65392741 65392741 + Missense_Mutation SNP A A T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PHLPP2 23035 broad.mit.edu;ucsc.edu 37 16 71682850 71682850 + Silent SNP A G G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PI4KA 5297 hgsc.bcm.edu 37 22 21073055 21073055 + Silent SNP G G C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51935825 51935825 + Missense_Mutation SNP G G T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 POLE 5426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133219900 133219900 + Missense_Mutation SNP G G C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PPP1R15B 84919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204378920 204378920 + Missense_Mutation SNP T T A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RAET1G 353091 broad.mit.edu;hgsc.bcm.edu 37 6 150240312 150240312 + Missense_Mutation SNP T T A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RASGRP2 10235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64507132 64507132 + Missense_Mutation SNP G G C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RBM6 10180 hgsc.bcm.edu;ucsc.edu 37 3 50112706 50112706 + Silent SNP C C T rs148501050 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RBMX 27316 hgsc.bcm.edu 37 X 135956571 135956572 + Frame_Shift_Ins INS - - GG novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RPS29 6235 broad.mit.edu;hgsc.bcm.edu 37 14 50053045 50053045 + Missense_Mutation SNP T T C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RPUSD2 27079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40866017 40866017 + Missense_Mutation SNP G G C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RUSC1 23623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155300229 155300229 + Missense_Mutation SNP G G T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39051932 39051932 + Silent SNP G G A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 SARS 6301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109772058 109772058 + Missense_Mutation SNP A A G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78196561 78196561 + Missense_Mutation SNP C C G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 SLC7A10 56301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33702235 33702235 + Splice_Site SNP C C G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 SMC3 9126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112356197 112356197 + Missense_Mutation SNP T T G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 SRCIN1 80725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36708271 36708271 + Missense_Mutation SNP A A C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 STAG1 10274 hgsc.bcm.edu;ucsc.edu 37 3 136141378 136141379 + Frame_Shift_Del DEL AC AC - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 SVIL 6840 hgsc.bcm.edu;ucsc.edu 37 10 29762797 29762805 + In_Frame_Del DEL CGTCATCAG CGTCATCAG - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 CGTCATCAG CGTCATCAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152711518 152711518 + Missense_Mutation SNP A A T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 TBX18 9096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 85447027 85447027 + Missense_Mutation SNP G G T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 THRAP3 9967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36755101 36755101 + Missense_Mutation SNP C C T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63030443 63030443 + Missense_Mutation SNP A A G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 TRHDE 29953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 73056887 73056887 + Missense_Mutation SNP C C T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 UBC 7316 hgsc.bcm.edu 37 12 125397187 125397187 + Silent SNP G G A rs71458875 TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 UTP18 51096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 49340732 49340732 + Missense_Mutation SNP A A G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188268 10188269 + Frame_Shift_Ins INS - - C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100887766 100887766 + Missense_Mutation SNP G G T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 XPC 7508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14200007 14200007 + Missense_Mutation SNP T T A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 XPOT 11260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64827305 64827305 + Silent SNP C C T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 ZBTB41 360023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197168567 197168567 + Missense_Mutation SNP T T C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 ZFYVE27 118813 hgsc.bcm.edu;ucsc.edu 37 10 99504492 99504499 + Frame_Shift_Del DEL GGTACTCA GGTACTCA - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 GGTACTCA GGTACTCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 ZMYM4 9202 broad.mit.edu;hgsc.bcm.edu 37 1 35836041 35836041 + Missense_Mutation SNP G G T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 ACSS1 84532 broad.mit.edu 37 20 25038626 25038633 + Frame_Shift_Del DEL GCCGCCCT - - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 GCCGCCCT GCCGCCCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 BOLA1 51027 broad.mit.edu 37 1 149871795 149871795 + Silent SNP G T T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CASP14 23581 broad.mit.edu 37 19 15164766 15164766 + Nonsense_Mutation SNP G T T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 CT47B1 643311 broad.mit.edu 37 X 120009111 120009111 + Missense_Mutation SNP G T T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 FNBP4 23360 broad.mit.edu 37 11 47738988 47738988 + Missense_Mutation SNP C A A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 FNBP4 23360 broad.mit.edu 37 11 47738989 47738989 + Missense_Mutation SNP C T T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 HSD17B7P2 158160 broad.mit.edu 37 10 38645403 38645403 + Silent SNP T C C rs72639552 bycluster;by1000genomes TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 LMOD2 442721 broad.mit.edu 37 7 123302309 123302309 + Missense_Mutation SNP C A A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 MEF2A 4205 broad.mit.edu 37 15 100252892 100252892 + Frame_Shift_Del DEL A - - novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 NOS3 4846 broad.mit.edu 37 7 150693876 150693876 + Silent SNP C A A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PKHD1L1 93035 broad.mit.edu 37 8 110441591 110441591 + Missense_Mutation SNP G T T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 PLA2G6 8398 broad.mit.edu 37 22 38536025 38536025 + Missense_Mutation SNP T G G novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 RRN3P1 730092 broad.mit.edu 37 16 21817482 21817482 + Silent SNP C T T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 Unknown 0 broad.mit.edu 37 15 102292820 102292820 + Silent SNP G C C novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 ZMYM4 9202 broad.mit.edu 37 1 35836039 35836039 + Nonsense_Mutation SNP C A A novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353 ZNF516 9658 broad.mit.edu 37 18 74154244 74154244 + Missense_Mutation SNP G T T novel TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7b56e923-2bc5-4368-8e28-42649d3bf169 69e373e0-a10b-4728-af8d-a45ecdb39353