Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALPPL2 251 hgsc.bcm.edu 37 2 233271669 233271669 + Missense_Mutation SNP C C T rs41415150 TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 ANGPT1 284 broad.mit.edu;hgsc.bcm.edu 37 8 108348486 108348486 + Missense_Mutation SNP G G T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 AOX1 316 broad.mit.edu;ucsc.edu 37 2 201533423 201533423 + Missense_Mutation SNP G T T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155449218 155449218 + Missense_Mutation SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 ATAD3C 219293 hgsc.bcm.edu 37 1 1391612 1391612 + Frame_Shift_Del DEL C C - novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 ATXN2 6311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 111923629 111923629 + Missense_Mutation SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 B4GALT5 9334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 48273175 48273175 + Silent SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 C14orf177 283598 hgsc.bcm.edu 37 14 99182527 99182535 + Frame_Shift_Del DEL GGATGCATC GGATGCATC - rs139827156 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 GGATGCATC GGATGCATC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 C19orf51 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55670934 55670934 + Missense_Mutation SNP G G T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 C2orf67 0 broad.mit.edu;ucsc.edu 37 2 210889826 210889826 + Splice_Site SNP G A A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 CDH12 1010 broad.mit.edu;ucsc.edu 37 5 21760751 21760751 + Missense_Mutation SNP G T T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 CELSR1 9620 hgsc.bcm.edu 37 22 46759085 46759111 + Frame_Shift_Del DEL CTGATGGTTCAAATTGAAGTTTCATTA CTGATGGTTCAAATTGAAGTTTCATTA - novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 CTGATGGTTCAAATTGAAGTTTCATTA CTGATGGTTCAAATTGAAGTTTCATTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 CHST15 51363 hgsc.bcm.edu 37 10 125780765 125780765 + Frame_Shift_Del DEL T T - novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 CLRN1 7401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150659493 150659493 + Silent SNP G G T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 CUEDC2 79004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104184284 104184284 + Silent SNP T T A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 ELTD1 64123 broad.mit.edu;ucsc.edu 37 1 79387470 79387470 + Missense_Mutation SNP A C C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 FAH 2184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 80452758 80452758 + Silent SNP C C T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92088147 92088147 + Missense_Mutation SNP T T C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 FLJ33360 401172 broad.mit.edu;hgsc.bcm.edu 37 5 6312489 6312489 + RNA SNP C C T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 FNIP2 57600 broad.mit.edu;ucsc.edu 37 4 159789371 159789371 + Missense_Mutation SNP C A A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 FREM2 341640 broad.mit.edu;ucsc.edu 37 13 39451341 39451341 + Missense_Mutation SNP A G G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 IDH1 3417 broad.mit.edu;ucsc.edu 37 2 209108295 209108295 + Missense_Mutation SNP T G G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62288675 62288675 + Missense_Mutation SNP A A G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 KRT6B 3854 broad.mit.edu;hgsc.bcm.edu 37 12 52842629 52842629 + Missense_Mutation SNP C C A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 KRTAP9-4 85280 hgsc.bcm.edu 37 17 39406343 39406343 + Missense_Mutation SNP A A G rs76766237 TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 LRP1 4035 broad.mit.edu;hgsc.bcm.edu 37 12 57577934 57577934 + Missense_Mutation SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 LRRIQ1 84125 hgsc.bcm.edu 37 12 85638646 85638646 + Frame_Shift_Del DEL A A - rs142232627 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 MIR208B 100126336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23887232 23887232 + RNA SNP G G T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 MSLNL 401827 hgsc.bcm.edu 37 16 830807 830829 + Frame_Shift_Del DEL AGCTGTGTGCACGGGTAGGTGAA AGCTGTGTGCACGGGTAGGTGAA - novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 AGCTGTGTGCACGGGTAGGTGAA AGCTGTGTGCACGGGTAGGTGAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 MUC4 4585 hgsc.bcm.edu 37 3 195513758 195513758 + Missense_Mutation SNP G G C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 MYH1 4619 broad.mit.edu;hgsc.bcm.edu 37 17 10409332 10409332 + Missense_Mutation SNP G G C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 MYH1 4619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10408350 10408350 + Missense_Mutation SNP C C T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 NAV3 89795 broad.mit.edu;ucsc.edu 37 12 78392214 78392214 + Missense_Mutation SNP G A A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 NET1 10276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5494480 5494480 + Missense_Mutation SNP C C T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 NRXN1 9378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 50149352 50149352 + Silent SNP T T A rs55923848 bycluster;byfrequency;alternate_allele TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 OR7D4 125958 broad.mit.edu;hgsc.bcm.edu 37 19 9325393 9325393 + Missense_Mutation SNP C C T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 PAPSS1 9061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 108608293 108608293 + Nonsense_Mutation SNP A A C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621464 52621464 + Nonsense_Mutation SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 PDE11A 50940 hgsc.bcm.edu 37 2 178936994 178936994 + Frame_Shift_Del DEL A A - novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 PGLYRP3 114771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153271694 153271694 + Nonsense_Mutation SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 PGM5 5239 hgsc.bcm.edu 37 9 71094451 71094452 + Frame_Shift_Ins INS - - C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 PHTF2 57157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 77469587 77469587 + Silent SNP C C G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 PPP1R3F 89801 broad.mit.edu;hgsc.bcm.edu 37 X 49143162 49143162 + Silent SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 RBM11 54033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15592035 15592035 + Missense_Mutation SNP A A T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 RCC2 55920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17739593 17739593 + Nonsense_Mutation SNP C C T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 RPL19 6143 hgsc.bcm.edu 37 17 37360844 37360844 + Silent SNP G G A rs72823350 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 RSRC2 65117 broad.mit.edu;ucsc.edu 37 12 123003401 123003401 + Missense_Mutation SNP G T T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 SIGLEC5 8778 hgsc.bcm.edu 37 19 52131256 52131257 + Frame_Shift_Ins INS - - G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 SLC9A2 6549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 103281704 103281704 + Missense_Mutation SNP C C G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 SNRNP27 11017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70122252 70122252 + Missense_Mutation SNP C C T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 SPPL3 121665 broad.mit.edu;ucsc.edu 37 12 121206288 121206288 + Missense_Mutation SNP A T T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 STAMBP 10617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74087228 74087228 + Missense_Mutation SNP T T C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 STK24 8428 hgsc.bcm.edu;ucsc.edu 37 13 99118770 99118771 + Frame_Shift_Ins INS - - A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 SYT5 6861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55686305 55686305 + Silent SNP G G A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 TBC1D3F 84218 hgsc.bcm.edu 37 17 36338191 36338192 + Frame_Shift_Ins INS - - G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57458628 57458628 + Silent SNP C C A rs147522860 alternate_allele TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 TMEM154 201799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 153564272 153564272 + Missense_Mutation SNP A A T novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 TRIM59 286827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 160156326 160156326 + Missense_Mutation SNP G G C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 UBE2D3 7323 broad.mit.edu;ucsc.edu 37 4 103723780 103723780 + Nonsense_Mutation SNP G A A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 UBR3 130507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170885902 170885902 + Silent SNP T T A novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 URGCP 55665 broad.mit.edu;hgsc.bcm.edu 37 7 43918173 43918173 + Missense_Mutation SNP C C G novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 ZNF519 162655 hgsc.bcm.edu 37 18 14105166 14105249 + In_Frame_Del DEL TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT - novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 FAM38A 0 broad.mit.edu 37 16 88787608 88787610 + In_Frame_Del DEL CTT - - rs150376294 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 GOLGA6L10 647042 broad.mit.edu 37 15 82635163 82635163 + RNA SNP C G G rs3970729 TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 MUC4 4585 broad.mit.edu 37 3 195510192 195510192 + Silent SNP A C C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 MUC4 4585 broad.mit.edu 37 3 195510194 195510194 + Missense_Mutation SNP G C C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 Unknown 0 broad.mit.edu 37 15 30771339 30771339 + RNA SNP A G G rs77482636 TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95 XIAP 331 broad.mit.edu 37 X 123025168 123025168 + Splice_Site SNP T C C novel TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 714cd118-7f2b-47a5-83f6-41b20674ad03 593c9ff9-5933-4eed-9477-3c0fa7c9dc95