Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTS19 171019 hgsc.bcm.edu 37 5 128797315 128797316 + In_Frame_Ins INS - - CCCGGC novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ANKH 56172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14751238 14751238 + Silent SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ASTN1 460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 176993851 176993851 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ASTN2 23245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119204736 119204736 + Silent SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 B3GNT8 374907 hgsc.bcm.edu 37 19 41931983 41931984 + Frame_Shift_Ins INS - - G novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 BDH1 622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197238941 197238941 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 BMP3 651 broad.mit.edu;hgsc.bcm.edu 37 4 81952663 81952663 + Silent SNP A A T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 C10orf35 219738 broad.mit.edu;hgsc.bcm.edu 37 10 71392632 71392632 + Missense_Mutation SNP G G T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 C2orf47 79568 broad.mit.edu;hgsc.bcm.edu 37 2 200826508 200826508 + Missense_Mutation SNP G G C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 CCT8 10694 broad.mit.edu;hgsc.bcm.edu 37 21 30442608 30442608 + Silent SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80097056 80097056 + Nonsense_Mutation SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 CYP1A1 1543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75013623 75013623 + Missense_Mutation SNP G G C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 DENND1A 57706 hgsc.bcm.edu 37 9 126146189 126146197 + Frame_Shift_Del DEL CGGCCTGTC CGGCCTGTC - novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 CGGCCTGTC CGGCCTGTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51758414 51758414 + Missense_Mutation SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 DNAH2 146754 broad.mit.edu;ucsc.edu 37 17 7630455 7630455 + Missense_Mutation SNP T C C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 DNAJA4 55466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78572439 78572439 + Silent SNP C C G novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 EP300 2033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41566499 41566499 + Missense_Mutation SNP A A T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 EPHB4 2050 broad.mit.edu;hgsc.bcm.edu 37 7 100401094 100401094 + Missense_Mutation SNP G G C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ERCC2 2068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45857991 45857991 + Silent SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 FAM50B 26240 broad.mit.edu;ucsc.edu 37 6 3850568 3850568 + Missense_Mutation SNP G T T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 FAM75D1 0 hgsc.bcm.edu;ucsc.edu 37 9 84608721 84608721 + Missense_Mutation SNP C C A rs12340292 bycluster;by2hit2allele;by1000genomes;alternate_allele TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 FMO1 2326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171244561 171244561 + Missense_Mutation SNP A A C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 FMO5 2330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 146696569 146696569 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 FRZB 2487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183731161 183731161 + Silent SNP G G T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 GALNTL4 374378 hgsc.bcm.edu;ucsc.edu 37 11 11470318 11470318 + Missense_Mutation SNP C C A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 GPR125 166647 broad.mit.edu;hgsc.bcm.edu 37 4 22437012 22437012 + Silent SNP A A T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 HIPK2 28996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139281488 139281488 + Missense_Mutation SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 IFIT1 3434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91162071 91162071 + Missense_Mutation SNP T T A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 IGSF22 283284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18736130 18736130 + Missense_Mutation SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 KCNN3 3782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154744736 154744736 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 KRT82 3888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52793886 52793886 + Silent SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 LELP1 149018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153177408 153177408 + Silent SNP C C A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 LRBA 987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 151511932 151511932 + Missense_Mutation SNP C C A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 LRDD 0 broad.mit.edu;hgsc.bcm.edu 37 11 803579 803579 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 LRRC61 65999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150034457 150034457 + Silent SNP T T A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 LRRIQ1 84125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 85546098 85546098 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 MAGEB6 158809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 26212326 26212326 + Silent SNP C C G novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 MAK16 84549 hgsc.bcm.edu 37 8 33354235 33354236 + In_Frame_Ins INS - - GAT novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 MITF 4286 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 69928509 69928509 + Missense_Mutation SNP C C T rs190215588 by1000genomes TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 MTUS2 23281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29608253 29608253 + Missense_Mutation SNP G G T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1087470 1087470 + Missense_Mutation SNP C C A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 MYO1A 4640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57437906 57437906 + Missense_Mutation SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 NMT2 9397 hgsc.bcm.edu 37 10 15151779 15151779 + Frame_Shift_Del DEL T T - novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 NRAP 4892 hgsc.bcm.edu;ucsc.edu 37 10 115389356 115389356 + Silent SNP G G C rs2286736 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes;alternate_allele TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 OR2J3 442186 broad.mit.edu;hgsc.bcm.edu 37 6 29079901 29079901 + Silent SNP C C G novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PDC 5132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186415580 186415580 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PDCD6IP 10015 broad.mit.edu;hgsc.bcm.edu 37 3 33887039 33887039 + Missense_Mutation SNP A A T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PI4K2B 55300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 25258214 25258214 + Missense_Mutation SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51524031 51524031 + Silent SNP A A G novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PLG 5340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161152232 161152232 + Missense_Mutation SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 POLR2A 5430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7417116 7417116 + Missense_Mutation SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PPWD1 23398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64867889 64867889 + Missense_Mutation SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PRSS12 8492 hgsc.bcm.edu;ucsc.edu 37 4 119239601 119239601 + Frame_Shift_Del DEL T T - novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PXDN 7837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1677555 1677555 + Missense_Mutation SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 RHCG 51458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90039695 90039695 + Silent SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 SATB2 23314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 200213434 200213434 + Missense_Mutation SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 SENP1 29843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48442848 48442848 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 SERPING1 710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57373959 57373959 + Missense_Mutation SNP C C G rs61761890 bycluster;alternate_allele TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 SLC20A2 6575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 42317465 42317465 + Missense_Mutation SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 SYDE2 84144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85648743 85648743 + Missense_Mutation SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57077445 57077445 + Missense_Mutation SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 USP24 23358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55622657 55622657 + Silent SNP C C T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 USP32 84669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 58282987 58282987 + Missense_Mutation SNP A A C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ZBTB1 22890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64988623 64988623 + Missense_Mutation SNP A A T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ZNF107 51427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 64166913 64166913 + Missense_Mutation SNP G G C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ZNF182 7569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 47836772 47836772 + Silent SNP T T C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ZNF445 353274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 44488853 44488853 + Silent SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ZNF543 125919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57839655 57839655 + Silent SNP G G A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ANGPTL4 51129 broad.mit.edu 37 19 8429515 8429515 + Missense_Mutation SNP A T T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 CHRNA1 1134 broad.mit.edu 37 2 175612767 175612767 + 3'UTR SNP T A A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 DOPEY2 9980 broad.mit.edu 37 21 37653892 37653892 + Missense_Mutation SNP A C C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 FAM131C 348487 broad.mit.edu 37 1 16361916 16361916 + Silent SNP G A A rs80300125 TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 GZMH 2999 broad.mit.edu 37 14 25076508 25076508 + Silent SNP A C C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 HIF3A 64344 broad.mit.edu 37 19 46811988 46811988 + Missense_Mutation SNP A C C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 HSF5 124535 broad.mit.edu 37 17 56565201 56565201 + Silent SNP G T T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 JAKMIP3 282973 broad.mit.edu 37 10 133961472 133961472 + Missense_Mutation SNP C T T rs138739966 by1000genomes TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 LGALS9B 284194 broad.mit.edu 37 17 20370782 20370783 + Frame_Shift_Ins INS - TC TC novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PDS5B 23047 broad.mit.edu 37 13 33332255 33332255 + Missense_Mutation SNP G C C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 PTTG3P 26255 broad.mit.edu 37 8 67680233 67680233 + Missense_Mutation SNP G T T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 Unknown 0 broad.mit.edu 37 12 92018 92018 + Missense_Mutation SNP T C C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 Unknown 0 broad.mit.edu 37 16 15023180 15023180 + Missense_Mutation SNP C T T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 Unknown 0 broad.mit.edu 37 9 68413572 68413572 + RNA SNP C T T novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 Unknown 0 broad.mit.edu 37 9 68413573 68413573 + RNA SNP G C C novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34 ZDHHC18 84243 broad.mit.edu 37 1 27176851 27176851 + Missense_Mutation SNP T A A novel TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd eacc4f56-30de-4978-a291-68a378436c34