Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48556346 48556346 + Silent SNP C C T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 ABCB5 340273 hgsc.bcm.edu;ucsc.edu 37 7 20785034 20785034 + Frame_Shift_Del DEL C C - novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 ARID5B 84159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63851221 63851221 + Missense_Mutation SNP A A C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 ATP13A4 84239 broad.mit.edu;hgsc.bcm.edu 37 3 193177001 193177001 + Missense_Mutation SNP A A G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 C1orf114 57821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169391358 169391358 + Missense_Mutation SNP A A G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 CD300E 342510 broad.mit.edu;hgsc.bcm.edu 37 17 72610086 72610086 + Missense_Mutation SNP C C T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 CLDN4 1364 broad.mit.edu;ucsc.edu 37 7 73246086 73246086 + Missense_Mutation SNP T G G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 CRB1 23418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197390735 197390735 + Missense_Mutation SNP G G A novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 CUL5 8065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 107974931 107974931 + Silent SNP A A G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 CYP4F12 66002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15794430 15794430 + Missense_Mutation SNP G G A novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 DSG1 1828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28934518 28934518 + Nonsense_Mutation SNP C C T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 DSG2 1829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29116293 29116293 + Missense_Mutation SNP G G C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 EFCAB2 84288 broad.mit.edu;hgsc.bcm.edu 37 1 245222709 245222709 + Missense_Mutation SNP G G C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 EPHX1 2052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226032237 226032237 + Missense_Mutation SNP T T C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 FANCF 2188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22646829 22646829 + Silent SNP C C T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 FGA 2243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155507521 155507521 + Missense_Mutation SNP G G T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 GLYATL1 92292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58711084 58711084 + Missense_Mutation SNP G G C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 GPR179 440435 hgsc.bcm.edu 37 17 36483603 36483604 + Frame_Shift_Ins INS - - T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 GRIN2A 2903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 9857569 9857569 + Missense_Mutation SNP G G T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 GUCY1A3 2982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 156632326 156632326 + Missense_Mutation SNP G G C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 HSPA5 3309 broad.mit.edu;hgsc.bcm.edu 37 9 127998975 127998975 + Missense_Mutation SNP T T C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 IGFL4 444882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46543533 46543533 + Missense_Mutation SNP C C T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 KIAA2018 205717 broad.mit.edu;hgsc.bcm.edu 37 3 113379013 113379013 + Missense_Mutation SNP T T C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 LRRC30 339291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7232028 7232028 + Frame_Shift_Del DEL A A - novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 MACF1 23499 broad.mit.edu;hgsc.bcm.edu 37 1 39934334 39934334 + Silent SNP C C T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 MLX 6945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40720575 40720575 + Missense_Mutation SNP C C T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 MTMR10 54893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 31282988 31282988 + Missense_Mutation SNP A A C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 MUC4 4585 hgsc.bcm.edu 37 3 195505788 195505788 + Missense_Mutation SNP G G C rs2550253 bycluster;byfrequency TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 NNT 23530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43677827 43677827 + Missense_Mutation SNP G G A novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52588839 52588839 + Frame_Shift_Del DEL G G - novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G G - G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57335855 57335855 + Missense_Mutation SNP A A T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 PRDM16 63976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3102700 3102700 + Missense_Mutation SNP G G A rs183153140 by1000genomes TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 PTEN 5728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 89711891 89711891 + Missense_Mutation SNP G G A novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 RASGEF1B 153020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 82355851 82355851 + Missense_Mutation SNP A A G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 RIMBP2 23504 broad.mit.edu;ucsc.edu 37 12 130926846 130926846 + Missense_Mutation SNP C T T rs141970284 TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 SELO 83642 hgsc.bcm.edu 37 22 50655685 50655686 + Frame_Shift_Ins INS - - C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 SMCHD1 23347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2722637 2722637 + Missense_Mutation SNP A A G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 SPTBN5 51332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42173407 42173407 + Missense_Mutation SNP C C G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 ZC3H11A 9877 broad.mit.edu;hgsc.bcm.edu 37 1 203816426 203816426 + Nonsense_Mutation SNP C C A novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 ZNF280C 55609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129343630 129343630 + Missense_Mutation SNP A A T novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 ZNF280C 55609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129343631 129343631 + Missense_Mutation SNP G G A novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 CACNG8 59283 broad.mit.edu 37 19 54483190 54483190 + Missense_Mutation SNP T G G novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 DNAH11 8701 broad.mit.edu 37 7 21908580 21908580 + Missense_Mutation SNP T C C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 DOPEY2 9980 broad.mit.edu 37 21 37653892 37653892 + Missense_Mutation SNP A C C novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 FNBP4 23360 broad.mit.edu 37 11 47788664 47788669 + In_Frame_Del DEL GGTGGT - - rs144392734 bycluster;by1000genomes TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 GGTGGT GGTGGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 SPTBN2 6712 broad.mit.edu 37 11 66472256 66472256 + Nonsense_Mutation SNP C A A novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508 ZDHHC19 131540 broad.mit.edu 37 3 195934301 195934301 + Frame_Shift_Del DEL C - - novel TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e1241cff-4071-482e-be5b-adb9c46a480a 57bb209a-9a43-48f4-8183-8350bee49508