Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF ABCF1 0 genome.wustl.edu 37 6 30545853 30545854 + Frame_Shift_Ins INS - - A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 6 30545853 30545854 - A INS ABCF1 ENST00000326195 human ensembl 74_37 +1 known frame_shift_ins c.217_218 p.K77fs 1.000:1.000 NULL pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like - no_errors ABCF1 HGNC ENSG00000204574 tier1 19 0 0.00 23 3 11.54 C16orf96 0 genome.wustl.edu 37 16 4638207 4638207 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 16 4638207 4638207 G T SNP C16orf96 ENST00000444310 human ensembl 74_37 +1 known missense c.2467 p.V823F 0.096 NULL NULL - no_errors C16orf96 HGNC ENSG00000205832 tier1 - - 44 0 0.00 25 3 10.71 C1QTNF6 0 genome.wustl.edu 37 22 37576428 37576428 + RNA SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 22 37576428 37576428 C T SNP C1QTNF6 ENST00000470655 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors C1QTNF6 HGNC ENSG00000133466 tier1 - - 61 0 0.00 42 4 8.70 C1orf111 0 genome.wustl.edu 37 1 162343862 162343862 + Silent SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 1 162343862 162343862 G T SNP C1orf111 ENST00000367935 human ensembl 74_37 -1 known silent c.762 p.G254 0.000 NULL NULL - no_errors C1orf111 HGNC ENSG00000171722 37 0 0.00 38 2 5.00 C2orf43 0 genome.wustl.edu 37 2 20885317 20885317 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 2 20885317 20885317 G T SNP C2orf43 ENST00000403006 human ensembl 74_37 -1 putative missense c.685 p.P229T 0.053 NULL pfam_DUF2305 - no_errors C2orf43 HGNC ENSG00000118961 43 0 0.00 47 3 6.00 CILP2 0 genome.wustl.edu 37 19 19656499 19656499 + Silent SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 19 19656499 19656499 C T SNP CILP2 ENST00000291495 human ensembl 74_37 +1 known silent c.3145 p.L1049 0.997 NULL pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom - no_errors CILP2 HGNC ENSG00000160161 60 0 0.00 46 3 6.12 CNN2 0 genome.wustl.edu 37 19 1037969 1037971 + RNA DEL TTT TTT - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 TTT TTT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 19 1037969 1037971 TTT - DEL CNN2 ENST00000606983 human ensembl 74_37 +1 known rna NULL NULL 0.000:0.000:0.000 - - - no_errors CNN2 HGNC ENSG00000064666 tier1 20 0 0.00 10 7 41.18 COL22A1 0 genome.wustl.edu 37 8 139697551 139697551 + Missense_Mutation SNP G G A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 8 139697551 139697551 G A SNP COL22A1 ENST00000303045 human ensembl 74_37 -1 known missense c.2867 p.A956V 0.012 pfam_Collagen pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A - no_errors COL22A1 HGNC ENSG00000169436 29 0 0.00 29 2 6.45 DERL1 0 genome.wustl.edu 37 8 124054277 124054277 + Missense_Mutation SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 8 124054277 124054277 C T SNP DERL1 ENST00000259512 human ensembl 74_37 -1 known missense c.86 p.G29D 1.000 pfam_DER1 pfam_DER1 - no_errors DERL1 HGNC ENSG00000136986 tier1 - - 112 0 0.00 68 4 5.56 DNAJC11 0 genome.wustl.edu 37 1 6700029 6700029 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 1 6700029 6700029 G T SNP DNAJC11 ENST00000377577 human ensembl 74_37 -1 known missense c.1186 p.P396T 1.000 NULL pfam_DnaJ-like_C11_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain - no_errors DNAJC11 HGNC ENSG00000007923 tier1 - - 37 0 0.00 38 4 9.52 ENSG00000200294 0 genome.wustl.edu 37 10 73940733 73940733 + RNA DEL T T - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 10 73940733 73940733 T - DEL ENSG00000200294 ENST00000363424 human ensembl 74_37 +1 novel rna NULL NULL 0.371 - - - no_errors SNORA36 RFAM ENSG00000200294 tier1 21 0 0.00 18 4 18.18 ENSG00000223697 0 genome.wustl.edu 37 8 133854714 133854715 + RNA INS - - T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 8 133854714 133854715 - T INS ENSG00000223697 ENST00000608375 human ensembl 74_37 -1 known rna NULL NULL 0.014:0.003 - - - no_errors AF230666.2 Clone_based_vega_gene ENSG00000223697 tier1 18 0 0.00 16 6 27.27 ENSG00000261711 0 genome.wustl.edu 37 16 34712970 34712970 + RNA DEL A A - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 16 34712970 34712970 A - DEL ENSG00000261711 ENST00000569028 human ensembl 74_37 -1 known rna NULL NULL 0.006 - - - no_errors RP11-80F22.9 Clone_based_vega_gene ENSG00000261711 tier1 41 0 0.00 27 4 12.90 FBN1 0 genome.wustl.edu 37 15 48777639 48777639 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 15 48777639 48777639 G T SNP FBN1 ENST00000316623 human ensembl 74_37 -1 known missense c.3644 p.S1215Y 1.000 pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom - no_errors FBN1 HGNC ENSG00000166147 54 0 0.00 37 2 5.13 FOXRED1 0 genome.wustl.edu 37 11 126147446 126147446 + Silent SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 11 126147446 126147446 G T SNP FOXRED1 ENST00000263578 human ensembl 74_37 +1 known silent c.1323 p.G441 0.985 pfam_FAD-dep_OxRdtase pfam_FAD-dep_OxRdtase - no_errors FOXRED1 HGNC ENSG00000110074 43 0 0.00 35 4 10.26 GDF10 0 genome.wustl.edu 37 10 48438447 48438447 + Silent SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 10 48438447 48438447 C T SNP GDF10 ENST00000224605 human ensembl 74_37 -1 known silent c.264 p.R88 0.980 pfam_TGF-b_N,pirsf_BMP3/GDF10 pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10 - no_errors GDF10 HGNC ENSG00000107623 tier1 - - 58 0 0.00 39 4 9.30 GPRIN2 0 genome.wustl.edu 37 10 46999608 46999608 + Frame_Shift_Del DEL C C - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 10 46999608 46999608 C - DEL GPRIN2 ENST00000374314 human ensembl 74_37 +1 known frame_shift_del c.728 p.A243fs 0.001 NULL NULL - no_errors GPRIN2 HGNC ENSG00000204175 tier1 72 0 0.00 64 7 9.86 HSD17B4 0 genome.wustl.edu 37 5 118814681 118814681 + Missense_Mutation SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 5 118814681 118814681 C T SNP HSD17B4 ENST00000256216 human ensembl 74_37 +1 known missense c.587 p.A196V 1.000 prints_DHB_DH pfam_MaoC_dom,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH - no_errors HSD17B4 HGNC ENSG00000133835 54 0 0.00 36 3 7.69 KIFC2 0 genome.wustl.edu 37 8 145697980 145697980 + Frame_Shift_Del DEL C C - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 8 145697980 145697980 C - DEL KIFC2 ENST00000301332 human ensembl 74_37 +1 known frame_shift_del c.1752 p.S584fs 0.976 pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom - no_errors KIFC2 HGNC ENSG00000167702 tier1 16 0 0.00 4 2 33.33 MAP4K3 0 genome.wustl.edu 37 2 39552664 39552665 + In_Frame_Ins INS - - ATC TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 2 39552664 39552665 - ATC INS MAP4K3 ENST00000263881 human ensembl 74_37 -1 known in_frame_ins c.913_912 p.304in_frame_insD 1.000:1.000 superfamily_Kinase-like_dom pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom - no_errors MAP4K3 HGNC ENSG00000011566 tier1 33 0 0.00 33 2 5.71 MARCH7 0 genome.wustl.edu 37 2 160604680 160604680 + Frame_Shift_Del DEL T T - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 2 160604680 160604680 T - DEL MARCH7 ENST00000259050 human ensembl 74_37 +1 known frame_shift_del c.879 p.S296fs 0.910 NULL pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH - no_errors MARCH7 HGNC ENSG00000136536 tier1 27 0 0.00 21 3 12.50 MDN1 0 genome.wustl.edu 37 6 90371837 90371837 + Missense_Mutation SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 6 90371837 90371837 C T SNP MDN1 ENST00000369393 human ensembl 74_37 -1 known missense c.14534 p.G4845D 0.996 pirsf_Midasin pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A - no_errors MDN1 HGNC ENSG00000112159 tier1 - - 81 0 0.00 63 4 5.97 MOSPD1 0 genome.wustl.edu 37 X 134033227 134033227 + RNA DEL T T - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d X 134033227 134033227 T - DEL MOSPD1 ENST00000462060 human ensembl 74_37 -1 known rna NULL NULL 0.001 - - - no_errors MOSPD1 HGNC ENSG00000101928 tier1 23 0 0.00 25 3 10.71 MRRF 0 genome.wustl.edu 37 9 125084867 125084867 + Nonsense_Mutation SNP G G A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 9 125084867 125084867 G A SNP MRRF ENST00000373723 human ensembl 74_37 +1 known nonsense c.600 p.W200* 1.000 NULL pfam_Ribosome_recyc_fac_dom,superfamily_Ribosome_recyc_fac_dom - no_errors MRRF HGNC ENSG00000148187 tier1 - - 56 0 0.00 42 4 8.70 MUC12 0 genome.wustl.edu 37 7 100612955 100612956 + In_Frame_Ins INS - - CTG TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 7 100612955 100612956 - CTG INS MUC12 ENST00000536621 human ensembl 74_37 +1 known in_frame_ins c.52_53 p.19in_frame_insA 0.000:0.000 NULL pfam_SEA_dom - no_errors MUC12 HGNC ENSG00000205277 tier1 28 0 0.00 17 5 22.73 NMD3 0 genome.wustl.edu 37 3 160951234 160951234 + Silent SNP G G A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 3 160951234 160951234 G A SNP NMD3 ENST00000351193 human ensembl 74_37 +1 known silent c.324 p.K108 1.000 pfam_NMD3 pfam_NMD3 - no_errors NMD3 HGNC ENSG00000169251 59 0 0.00 25 2 7.41 NR4A3 0 genome.wustl.edu 37 9 102590532 102590532 + Nonsense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 9 102590532 102590532 G T SNP NR4A3 ENST00000330847 human ensembl 74_37 +1 known nonsense c.241 p.E81* 1.000 NULL pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt - no_errors NR4A3 HGNC ENSG00000119508 17 0 0.00 24 2 7.69 ODF2L 0 genome.wustl.edu 37 1 86842069 86842069 + Silent SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 1 86842069 86842069 C T SNP ODF2L ENST00000317336 human ensembl 74_37 -1 known silent c.657 p.L219 0.970 NULL NULL - no_errors ODF2L HGNC ENSG00000122417 tier1 - - 92 0 0.00 69 4 5.48 OR5AU1 0 genome.wustl.edu 37 14 21623832 21623832 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 14 21623832 21623832 G T SNP OR5AU1 ENST00000304418 human ensembl 74_37 -1 known missense c.353 p.S118Y 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR5AU1 HGNC ENSG00000169327 tier1 - - 70 0 0.00 60 4 6.25 OR5L1 0 genome.wustl.edu 37 11 55579776 55579776 + Silent SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 11 55579776 55579776 C T SNP OR5L1 ENST00000333973 human ensembl 74_37 +1 known silent c.834 p.Y278 0.252 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR5L1 HGNC ENSG00000186117 25 0 0.00 29 2 6.45 PBX2P1 0 genome.wustl.edu 37 3 142897268 142897269 + RNA INS - - TTGT TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 3 142897268 142897269 0 TTGT INS PBX2P1 ENST00000560287 human ensembl 74_37 +1 known rna NULL NULL 0.430:0.352 - - - no_errors PBX2P1 HGNC ENSG00000244171 8 0 0.00 8 4 33.33 POLR1A 0 genome.wustl.edu 37 2 86271375 86271375 + Missense_Mutation SNP G G A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 2 86271375 86271375 G A SNP POLR1A ENST00000263857 human ensembl 74_37 -1 known missense c.3022 p.R1008C 1.000 pfam_RNA_pol_Rpb1_5 pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N - no_errors POLR1A HGNC ENSG00000068654 35 0 0.00 38 2 5.00 RNLS 0 genome.wustl.edu 37 10 90122415 90122415 + Silent SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 10 90122415 90122415 G T SNP RNLS ENST00000331772 human ensembl 74_37 -1 known silent c.594 p.L198 1.000 pfam_Amino_oxidase pfam_Amino_oxidase - no_errors RNLS HGNC ENSG00000184719 25 0 0.00 37 2 5.00 RP1 0 genome.wustl.edu 37 8 55537883 55537883 + Nonsense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 8 55537883 55537883 G T SNP RP1 ENST00000220676 human ensembl 74_37 +1 known nonsense c.1441 p.G481* 0.604 NULL pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom - no_errors RP1 HGNC ENSG00000104237 37 0 0.00 30 2 6.25 SERPINA13P 0 genome.wustl.edu 37 14 95108116 95108116 + RNA SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 14 95108116 95108116 G T SNP SERPINA13P ENST00000469935 human ensembl 74_37 +1 known rna NULL NULL 0.001 - - - no_errors SERPINA13P HGNC ENSG00000187483 tier1 - - 38 0 0.00 27 4 12.90 SMIM11 0 genome.wustl.edu 37 21 35774492 35774492 + RNA DEL T T - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 21 35774492 35774492 T - DEL SMIM11 ENST00000481710 human ensembl 74_37 +1 known rna NULL NULL 0.002 - - - no_errors SMIM11 HGNC ENSG00000205670 tier1 24 0 0.00 23 5 17.86 SNX21 0 genome.wustl.edu 37 20 44470649 44470649 + RNA DEL T T - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 20 44470649 44470649 T - DEL SNX21 ENST00000344780 human ensembl 74_37 +1 known rna NULL NULL 0.017 - - - no_errors SNX21 HGNC ENSG00000124104 tier1 38 0 0.00 22 5 18.52 STYK1 0 genome.wustl.edu 37 12 10772915 10772915 + Missense_Mutation SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 12 10772915 10772915 C T SNP STYK1 ENST00000075503 human ensembl 74_37 -1 known missense c.1097 p.R366H 0.998 pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors STYK1 HGNC ENSG00000060140 32 0 0.00 34 2 5.56 SUCLG1 0 genome.wustl.edu 37 2 84668530 84668530 + Frame_Shift_Del DEL A A - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 2 84668530 84668530 A - DEL SUCLG1 ENST00000393868 human ensembl 74_37 -1 known frame_shift_del c.372 p.F124fs 1.000 pfam_CoA-bd,smart_CoA-bd,pirsf_CoA_lig_alpha,tigrfam_CoA_lig_alpha pfam_CoA-bd,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_CoA_lig_alpha,prints_CoA_lig_alpha,tigrfam_CoA_lig_alpha - no_errors SUCLG1 HGNC ENSG00000163541 tier1 24 0 0.00 23 2 8.00 TDRD6 0 genome.wustl.edu 37 6 46660414 46660415 + Frame_Shift_Ins INS - - A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 6 46660414 46660415 - A INS TDRD6 ENST00000316081 human ensembl 74_37 +1 known frame_shift_ins c.4549_4550 p.M1520fs 0.002:0.009 pfam_Tudor pfam_Tudor,smart_Tudor,pfscan_Tudor - no_errors TDRD6 HGNC ENSG00000180113 tier1 27 0 0.00 29 3 9.38 TEP1 0 genome.wustl.edu 37 14 20851740 20851740 + Silent SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 14 20851740 20851740 G T SNP TEP1 ENST00000262715 human ensembl 74_37 -1 known silent c.3774 p.G1258 0.999 superfamily_P-loop_NTPase,pfscan_NACHT_NTPase pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TEP1 HGNC ENSG00000129566 tier1 - - 33 0 0.00 24 4 14.29 TRMT11 0 genome.wustl.edu 37 6 126333975 126333975 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 6 126333975 126333975 G T SNP TRMT11 ENST00000334379 human ensembl 74_37 +1 known missense c.984 p.K328N 0.645 pirsf_tRNA_mtfrase_TRM11 pfam_RNA_methylase_dom,pirsf_tRNA_mtfrase_TRM11,prints_N12N6_MeTrfase - no_errors TRMT11 HGNC ENSG00000066651 tier1 - - 47 0 0.00 28 3 9.38 TTI2 0 genome.wustl.edu 37 8 33357912 33357912 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 8 33357912 33357912 G T SNP TTI2 ENST00000360742 human ensembl 74_37 -1 known missense c.1356 p.S452R 0.000 superfamily_ARM-type_fold pfam_DUF2454,superfamily_ARM-type_fold - no_errors TTI2 HGNC ENSG00000129696 tier1 - - 80 0 0.00 60 4 6.25 TTN 0 genome.wustl.edu 37 2 179398098 179398098 + Missense_Mutation SNP C C A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 2 179398098 179398098 C A SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.95540 p.G31847V 1.000 pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 tier1 - - 65 0 0.00 40 4 9.09 UBE2D2 0 genome.wustl.edu 37 5 139006354 139006354 + Missense_Mutation SNP G G T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 5 139006354 139006354 G T SNP UBE2D2 ENST00000398733 human ensembl 74_37 +1 known missense c.412 p.A138S 1.000 pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2 - no_errors UBE2D2 HGNC ENSG00000131508 tier1 - - 47 0 0.00 43 4 8.51 UBXN6 0 genome.wustl.edu 37 19 4453480 4453480 + Missense_Mutation SNP C C T TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 19 4453480 4453480 C T SNP UBXN6 ENST00000301281 human ensembl 74_37 -1 known missense c.287 p.S96N 0.000 NULL pfam_PUB_domain,pfam_UBX,smart_PUG-dom,smart_UBX,pfscan_UBX - no_errors UBXN6 HGNC ENSG00000167671 tier1 - - 19 0 0.00 18 4 18.18 ZDHHC8P1 0 genome.wustl.edu 37 22 23733627 23733627 + RNA SNP G G A TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 22 23733627 23733627 G A SNP ZDHHC8P1 ENST00000255890 human ensembl 74_37 -1 known rna NULL NULL 0.060 - - - no_errors ZDHHC8P1 HGNC ENSG00000133519 22 0 0.00 17 3 15.00 ZNF461 0 genome.wustl.edu 37 19 37128585 37128585 + RNA DEL A A - TCGA-IG-A4QT-01A-21D-A27G-09 TCGA-IG-A4QT-10A-02D-A27G-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c70203be-20a3-486b-960a-ce6e84f501a4 b0daba86-7d54-4faf-bcd8-8c2b10f4e42d 19 37128585 37128585 A - DEL ZNF461 ENST00000589442 human ensembl 74_37 -1 known rna NULL NULL 0.035 - - - no_errors ZNF461 HGNC ENSG00000197808 tier1 27 0 0.00 23 6 20.69