writing sdrf to DLBC.merger.sdrf.txt

------------------------------------------------------------------
2016-02-12 16:46:45.508339
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/DLBC/22214759/infile3.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/DLBC/22214759/infile3.input.tsv

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-8693-01.wig.txt
('', None)
0
c0e52ccb2127fcd22163c51f97c7294b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A4BB-01.wig.txt
('', None)
0
2d4bf2fc276045d519ad815ac0371724
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A4XK-01.wig.txt
('', None)
0
fe26c492fe433fb3d2a95765ed5c84ae
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A6HN-01.wig.txt
('', None)
0
2bc94ba965a68c27a8353abc940af2d4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A6HO-01.wig.txt
('', None)
0
2403ef7366025bd7568e5ed705c50925
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A7DS-01.wig.txt
('', None)
0
f79881031d753c42948676963e093ccd
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A7Q1-01.wig.txt
('', None)
0
4fd1db5cceebf5ab0fa9af69f8cb3f25
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A82F-01.wig.txt
('', None)
0
f28e1add7f6847bfa93858eeb3030032
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FA-A86F-01.wig.txt
('', None)
0
62247127b0bc70caf61a0eb1dcbdfbc4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-8041-01.wig.txt
('', None)
0
ecba959daaf93e4a3d631b98873b7770
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-8042-01.wig.txt
('', None)
0
ddf866fa841ffb46ebd5f83764c52226
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-8043-01.wig.txt
('', None)
0
87c120f5c46c8a842b43ae740a19b79f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-8046-01.wig.txt
('', None)
0
b358ebbb8e36039de2ceea30315237bb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-8047-01.wig.txt
('', None)
0
60128c63a7ae94a2b7d1d7f2648d37b9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-8061-01.wig.txt
('', None)
0
a355c74b41ccf31161c477b06ce97fa2
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-8062-01.wig.txt
('', None)
0
bc7bb23b6cfb084f9ae9bd8b03e1bde4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-A7CQ-01.wig.txt
('', None)
0
d77b08805cf3a01afdf39aa54a2e19f8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-A7CR-01.wig.txt
('', None)
0
6da171a5393f873412e32faef01ca422
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-A7CW-01.wig.txt
('', None)
0
9c4d06f50de57eb55505d49ec1314360
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FF-A7CX-01.wig.txt
('', None)
0
6684179982e73d9e762d006f7dc20d7b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FM-8000-01.wig.txt
('', None)
0
63df5fb522b72b5773f6513d432f845d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-G8-6324-01.wig.txt
('', None)
0
850908e78d37ee0c4ec84e92194a7742
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-G8-6325-01.wig.txt
('', None)
0
72d034779728937556f72af77e12ee92
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-G8-6326-01.wig.txt
('', None)
0
ab63c830a5d41ae28f4bafa2c6309ed6
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-G8-6906-01.wig.txt
('', None)
0
6f398f3fc9b55e005a4bb35a005e2b6b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-G8-6907-01.wig.txt
('', None)
0
04421ae2f29e7e014e892bbaa877a629
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-G8-6909-01.wig.txt
('', None)
0
c4bab44e846077b0041c0207e763203f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-G8-6914-01.wig.txt
('', None)
0
4c8e099be8d0e3bbd6007fc3f37f6fb9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GR-7351-01.wig.txt
('', None)
0
d21c3455cc0a16f4b8d133dece563642
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GR-7353-01.wig.txt
('', None)
0
f3f8a9777260cc0f04f854212218e26e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GR-A4D4-01.wig.txt
('', None)
0
5b6d6907eae1dae9bc31c3a5ca52245e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GR-A4D5-01.wig.txt
('', None)
0
743c1f9f326ce4a7cb8f379c8ef7bb17
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GR-A4D6-01.wig.txt
('', None)
0
34e56d455a019e8f917d906b5290a62e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GR-A4D9-01.wig.txt
('', None)
0
5f6505fc8bb51372fdd029672d464af3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TQ-01.wig.txt
('', None)
0
ed077cdab40ed842fd9c42e6e3321ded
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TT-01.wig.txt
('', None)
0
caed055ac54ef7f5a59248dabbd74010
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TU-01.wig.txt
('', None)
0
86d24b8f590fdebd3da17e1818180207
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TV-01.wig.txt
('', None)
0
d43c402cdcb9ae3ebbe827a69425ccad
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TW-01.wig.txt
('', None)
0
c1eb9ccb833e0ccf3242e48b18b87217
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TX-01.wig.txt
('', None)
0
ff72febeb7772da869b5ae70e6f62c38
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TY-01.wig.txt
('', None)
0
d03237511f3a17ec9614747988ee1152
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9TZ-01.wig.txt
('', None)
0
76a2dce76677acbd5565c8bb05405b0a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9U3-01.wig.txt
('', None)
0
f39f9d15f36ef243c090322d075d5991
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GS-A9U4-01.wig.txt
('', None)
0
dee775b4aa7a185d59b824f987b9bf5d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-RQ-A68N-01.wig.txt
('', None)
0
ead712b904a6c56749e594b2f7f5222e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-RQ-A6JB-01.wig.txt
('', None)
0
c7943f3824f65745f030e83c22ab635a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-RQ-AAAT-01.wig.txt
('', None)
0
5baa3a7834eaeaac2a7ab6b98248ca72
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/dlbc/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_DLBC.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-VB-A8QN-01.wig.txt
('', None)
0
54b938efe2490dd006d375d28a44a569
It is not in the dictionary
Make a softlink is done.