Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
C1orf170	84808	hgsc.bcm.edu	37	1	915431	915431	+	RNA	DEL	C	C	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	190.0	13.0	196.0	0.0	0.0684211	0	.	.	none	.	C1orf170	5	.	.	.	.	.	.	.	PASS	Atlas-Indel
TAP1	6890	hgsc.bcm.edu	37	6	32814856	32814859	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	TGTT	TGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	10.0	28.0	0.0	0.285714	0	.	.	none	.	TAP1	39	.	NM_000593	exon10	c.2207_2210del	p.736_737del	.	.	PASS	Atlas-Indel
PROSER1	80209	hgsc.bcm.edu	37	13	39588144	39588146	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	113.0	37.0	108.0	0.0	0.327	.	.	.	none	.	.	.	.	NM_025138	exon11	c.1244_1246del	p.415_416del	.	.	PASS	Pindel,Atlas-Indel
APBB2	323	hgsc.bcm.edu	37	4	41016418	41016418	+	Splice_Site	DEL	G	G	-	rs201401961	by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	121.0	12.0	136.0	0.0	0.0991736	0	G|0.971;-|0.029	0.029	strong	.	APBB2	61	.	NM_001166050	exon7	c.20-2C>-	.	.	.	PASS	Atlas-Indel
SLAMF8	56833	hgsc.bcm.edu	37	1	159799824	159799825	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	96.0	42.0	69.0	0.0	0.438	.	.	.	none	.	SLAMF8	30	.	NM_020125	exon2	c.208_209del	p.70_70del	.	.	PASS	Pindel,Atlas-Indel
FAM193A	8603	hgsc.bcm.edu	37	4	2632799	2632800	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	127.0	12.0	113.0	0.0	0.0944882	0	.	.	none	.	FAM193A	103	.	NM_001256666	exon3	c.68_69insC	p.G23fs	.	.	PASS	Atlas-Indel
PNPLA7	375775	hgsc.bcm.edu	37	9	140444627	140444628	+	Frame_Shift_Ins	INS	-	-	T	rs372921391		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	36.0	19.0	42.0	0.0	0.528	.	.	.	weak	.	PNPLA7	124	.	NM_152286	exon1	c.23_24insA	p.S8fs	.	.	PASS	Pindel,Atlas-Indel
APOB	338	hgsc.bcm.edu	37	2	21233099	21233101	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	46.0	17.0	41.0	0.0	0.370	.	.	.	none	.	APOB	761	.	NM_000384	exon26	c.6640_6642del	p.2214_2214del	.	.	PASS	Pindel,Atlas-Indel
ENO4	387712	hgsc.bcm.edu	37	10	118609160	118609160	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	143.0	41.0	124.0	0.0	0.287	.	.	.	none	.	ENO4	1	.	NM_001242699	exon1	c.82delC	p.R28fs	.	.	PASS	Pindel,Atlas-Indel
EFCAB4A	283229	hgsc.bcm.edu	37	11	831552	831553	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	71.0	20.0	60.0	0.0	0.282	.	.	.	none	.	EFCAB4A	16	.	NM_173584	exon9	c.876_877insGC	p.A292fs	.	.	PASS	Pindel,Atlas-Indel
ZNF687	57592	hgsc.bcm.edu	37	1	151263677	151263678	+	In_Frame_Ins	INS	-	-	ACA	rs145032688	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	27.0	10.0	23.0	0.0	0.370	.	-|0.977;ACA|0.023	0.023	strong	.	ZNF687	94	.	NM_020832	exon9	c.3706_3707insACA	p.D1236delinsDN	.	.	PASS	Pindel,Atlas-Indel
DDX58	23586	hgsc.bcm.edu	37	9	32457307	32457308	+	Frame_Shift_Ins	INS	-	-	AGAA	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	33.0	108.0	0.0	0.320	.	.	.	none	.	DDX58	82	.	NM_014314	exon18	c.2591_2592insTTCT	p.C864fs	.	.	PASS	Pindel,Atlas-Indel
CDAN1	146059	hgsc.bcm.edu	37	15	43020456	43020457	+	Frame_Shift_Ins	INS	-	-	TGAC	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	60.0	19.0	63.0	0.0	0.317	.	.	.	none	.	CDAN1	70	.	NM_138477	exon21	c.2814_2815insGTCA	p.Q938fs	.	.	PASS	Pindel,Atlas-Indel
FCN3	8547	hgsc.bcm.edu	37	1	27699671	27699671	+	Frame_Shift_Del	DEL	G	G	-	rs28357092	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	175.0	50.0	184.0	0.0	0.286	.	G|0.985;-|0.015	0.015	strong	.	FCN3	30	.	NM_003665	exon5	c.350delT	p.L117fs	.	.	PASS	Pindel,Atlas-Indel
SMEK2	57223	hgsc.bcm.edu	37	2	55777083	55777085	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	15.0	42.0	0.0	0.333	.	.	.	none	SMEK2_ENST00000345102,colon,carcinoma,+1,4	SMEK2	86	4	NM_001122964	exon17	c.2513_2515del	p.838_839del	.	.	PASS	Pindel,Atlas-Indel
DLX4	1748	hgsc.bcm.edu	37	17	48050500	48050501	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	138.0	10.0	140.0	0.0	0.0724638	0	.	.	none	.	DLX4	25	.	NM_138281	exon2	c.347_348insC	p.K116fs	.	.	PASS	Atlas-Indel
SPDYE6	729597	hgsc.bcm.edu	37	7	101988929	101988930	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	686.0	48.0	347.0	0.0	0.0699708	0	.	.	none	.	SPDYE6	1	.	NM_001146210	exon6	c.944_945del	p.315_315del	.	.	PASS	Atlas-Indel
CACNA1E	777	hgsc.bcm.edu	37	1	181732594	181732594	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	34.0	80.0	0.0	0.312	.	.	.	none	.	CACNA1E	778	.	NM_000721	exon34	c.4741delG	p.A1581fs	.	.	PASS	Pindel,Atlas-Indel
NBEAL1	65065	hgsc.bcm.edu	37	2	204002925	204002926	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	176.0	58.0	165.0	0.0	0.330	.	.	.	none	.	NBEAL1	266	.	NM_001114132	exon29	c.4518_4519del	p.1506_1507del	.	.	PASS	Pindel,Atlas-Indel
KDM4A	9682	hgsc.bcm.edu	37	1	44170034	44170035	+	Frame_Shift_Ins	INS	-	-	GGAGTAGGTGCTTCCA	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	68.0	15.0	89.0	0.0	0.221	.	.	.	none	.	KDM4A	74	.	NM_014663	exon22	c.3188_3189insGGAGTAGGTGCTTCCA	p.M1063_E1064delinsMEX	.	.	PASS	Pindel
OR4F4	26682	hgsc.bcm.edu	37	15	102462857	102462857	+	Missense_Mutation	SNP	C	C	T	rs200667206	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	1421.0	155.0	1380.0	2.0	0.109078	0.00144928	C|0.972;T|0.028	0.028	strong	OR4F4,NS,carcinoma,0,1	OR4F4	6	1	NM_001004195	exon1	c.G406A	p.G136S	TAATGCCGACACA	.	scavenged	Atlas-SNP
PTCHD2	57540	hgsc.bcm.edu	37	1	11561577	11561577	+	Silent	SNP	C	C	T	rs181120200	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	22.0	45.0	0.0	0.458333	0	C|0.997;T|0.003	0.003	strong	.	PTCHD2	193	.	NM_020780	exon2	c.C528T	p.P176P	CATCCCCGCGGCC	.	PASS	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	37	9	86518566	86518566	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	219.0	96.0	196.0	0.0	0.438356	0	.	.	none	.	KIF27	103	.	NM_017576	exon4	c.A867G	p.S289S	AATATGTGAACTC	.	PASS	Atlas-SNP
PVRL2	5819	hgsc.bcm.edu	37	19	45381649	45381649	+	Silent	SNP	C	C	T	rs373022885		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	69.0	36.0	75.0	0.0	0.521739	0	.	.	weak	.	PVRL2	58	.	NM_002856	exon6	c.C1212T	p.D404D	TGGCGACGGGGGA	.	PASS	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	37	3	129297255	129297255	+	Missense_Mutation	SNP	T	T	C	rs112755880	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	125.0	81.0	78.0	0.0	0.648	0	T|0.997;C|0.003	0.003	strong	.	PLXND1	149	.	NM_015103	exon9	c.A2263G	p.T755A	GCAGGGTCCGGGG	.	PASS	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	37	6	106543533	106543533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	68.0	6.0	63.0	0.0	0.0882353	0	.	.	none	PRDM1,colon,carcinoma,0,1	PRDM1	195	1	NM_001198	exon3	c.G335A	p.R112H	GCACACGTTTTGG	.	PASS	Atlas-SNP
CHIC1	53344	hgsc.bcm.edu	37	X	72797296	72797296	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	25.0	41.0	0.0	0.555556	0	.	.	none	.	CHIC1	13	.	NM_001039840	exon2	c.A350T	p.K117M	CAGGGAAGGTAAG	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	37	17	78363033	78363033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	179.0	89.0	151.0	0.0	0.497207	0	.	.	none	.	RNF213	766	.	NM_001256071	exon65	c.G15061A	p.A5021T	AGCGATGCCTGTG	.	PASS	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	37	9	90321293	90321293	+	Missense_Mutation	SNP	G	G	A	rs200627640	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	221.0	99.0	175.0	0.0	0.447964	0	G|0.999;A|0.001	0.001	strong	.	DAPK1	329	.	NM_004938	exon26	c.G3307A	p.V1103I	GTGGACGTCCCAG	.	PASS	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	37	5	140256920	140256920	+	Silent	SNP	G	G	C	rs115718636	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	262.0	124.0	195.0	0.0	0.473282	0	G|0.959;C|0.041	0.041	strong	PCDHA12,colon,carcinoma,0,2	PCDHA12	196	2	NM_018903	exon1	c.G1863C	p.P621P	CATCCCGTTCCAC	.	PASS	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	37	10	85992255	85992255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	82.0	19.0	100.0	0.0	0.231707	0	.	.	none	.	LRIT1	73	.	NM_015613	exon4	c.G1300A	p.V434M	CCTTCACAGACCT	.	PASS	Atlas-SNP
SENP8	123228	hgsc.bcm.edu	37	15	72432140	72432140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	125.0	5.0	106.0	0.0	0.04	0	.	.	none	.	SENP8	18	.	NM_001166340	exon2	c.C176T	p.T59I	AAGTCACCCAGTT	.	PASS	Atlas-SNP
SYT15	83849	hgsc.bcm.edu	37	10	46965017	46965017	+	Missense_Mutation	SNP	C	C	T	rs200586361	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	115.0	26.0	107.0	0.0	0.226087	0	C|0.998;T|0.002	0.002	weak	SYT15_ENST00000374328,NS,carcinoma,-1,1	SYT15	165	1	NM_031912	exon6	c.G928A	p.D310N	CTCTGTCCTCCTG	.	PASS	Atlas-SNP
CCDC71	64925	hgsc.bcm.edu	37	3	49201140	49201140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	76.0	16.0	56.0	0.0	0.210526	0	.	.	none	.	CCDC71	33	.	NM_022903	exon2	c.G502A	p.G168S	AGACACCTGGATA	.	PASS	Atlas-SNP
PGR	5241	hgsc.bcm.edu	37	11	100933407	100933407	+	Silent	SNP	G	G	A	rs139646398	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	31.0	89.0	0.0	0.430556	0	G|0.999;A|0.001	0.001	strong	.	PGR	115	.	NM_000926	exon4	c.C1983T	p.G661G	TGGAACGCCCACT	.	PASS	Atlas-SNP
SYCP2L	221711	hgsc.bcm.edu	37	6	10964015	10964015	+	Silent	SNP	G	G	A	rs115084361	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	32.0	79.0	0.0	0.5	0	G|0.987;A|0.013	0.013	strong	.	SYCP2L	101	.	NM_001040274	exon29	c.G2415A	p.R805R	TTCCAGGTTCAAT	.	PASS	Atlas-SNP
TMEM89	440955	hgsc.bcm.edu	37	3	48658924	48658924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	194.0	108.0	144.0	0.0	0.556701	0	.	.	none	TMEM89,NS,carcinoma,+1,1	TMEM89	10	1	NM_001008269	exon1	c.G266A	p.R89Q	CGCCGCCGCCCCT	.	PASS	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	37	15	27772697	27772697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	105.0	37.0	126.0	0.0	0.352381	0	.	.	none	GABRG3,NS,carcinoma,0,2	GABRG3	115	2	NM_033223	exon8	c.C984A	p.F328L	TGTCTTCGCCGCG	.	PASS	Atlas-SNP
NEIL1	79661	hgsc.bcm.edu	37	15	75646194	75646194	+	Missense_Mutation	SNP	C	C	T	rs142213781	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	47.0	22.0	36.0	0.0	0.468085	0	C|0.999;T|0.001	0.001	strong	.	NEIL1	36	.	NM_001256552	exon6	c.C1091T	p.T364I	GCCGTACCATCTG	.	PASS	Atlas-SNP
BTBD8	284697	hgsc.bcm.edu	37	1	92554283	92554283	+	Missense_Mutation	SNP	G	G	A	rs34856868	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	89.0	40.0	75.0	0.0	0.449438	0	G|0.980;A|0.020	0.020	strong	.	BTBD8	32	.	NM_183242	exon2	c.G178A	p.V60I	ACAGATGTTACCT	.	PASS	Atlas-SNP
RB1CC1	9821	hgsc.bcm.edu	37	8	53558307	53558307	+	Missense_Mutation	SNP	A	A	T	rs34701924	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	88.0	45.0	63.0	0.0	0.511364	0	A|0.993;T|0.007	0.007	strong	.	RB1CC1	163	.	NM_001083617	exon16	c.T3942A	p.N1314K	TTCTTCATTCTTT	.	PASS	Atlas-SNP
PAK4	10298	hgsc.bcm.edu	37	19	39668381	39668381	+	Missense_Mutation	SNP	G	G	A	rs372098486		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	98.0	4.0	75.0	0.0	0.0408163	0	.	.	weak	.	PAK4	40	.	NM_001014832	exon8	c.G1552A	p.E518K	TTCAACGAGCCAC	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139609156	139609156	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	20.0	113.0	0.0	0.217391	0	.	.	none	COL22A1,NS,carcinoma,0,1	COL22A1	390	1	NM_152888	exon62	c.C4423T	p.Q1475X	CAAGCTGCTTCCC	.	PASS	Atlas-SNP
CLK2	1196	hgsc.bcm.edu	37	1	155239302	155239302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	58.0	20.0	34.0	0.0	0.344828	0	.	.	none	.	CLK2	55	.	NM_003993	exon3	c.C376T	p.R126W	ATGTCCGGCTGCG	.	PASS	Atlas-SNP
PTCD3	55037	hgsc.bcm.edu	37	2	86352925	86352925	+	Silent	SNP	A	A	G	rs139474497	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	86.0	38.0	113.0	0.0	0.44186	0	A|0.991;G|0.009	0.009	strong	.	PTCD3	51	.	NM_017952	exon12	c.A873G	p.V291V	TGATGTATACACA	.	PASS	Atlas-SNP
ABL1	25	hgsc.bcm.edu	37	9	133760029	133760029	+	Silent	SNP	C	C	G	rs2229070	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	27.0	14.0	21.0	0.0	0.518519	0	C|0.885;G|0.115	0.115	strong	.	ABL1	1632	.	NM_007313	exon11	c.C2409G	p.P803P	TCCCCCCAGGCTG	.	PASS	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235955276	235955276	+	Silent	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	85.0	42.0	85.0	0.0	0.494118	0	.	.	none	.	LYST	370	.	NM_000081	exon12	c.C4266A	p.A1422A	ACCCATGGCCTTA	.	PASS	Atlas-SNP
MDH2	4191	hgsc.bcm.edu	37	7	75687382	75687382	+	Missense_Mutation	SNP	G	G	A	rs111879470	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	53.0	20.0	31.0	0.0	0.377358	0	G|0.998;A|0.002	0.002	strong	.	MDH2	35	.	NM_005918	exon4	c.G415A	p.V139I	ATCTGCGTCATTG	.	PASS	Atlas-SNP
IL34	146433	hgsc.bcm.edu	37	16	70693991	70693991	+	Silent	SNP	C	C	T	rs138439611		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	189.0	65.0	153.0	0.0	0.343915	0	C|1.000;T|0.000	0.000	weak	.	IL34	26	.	NM_152456	exon7	c.C630T	p.T210T	GGCCACCCAGCTG	.	PASS	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	37	5	176004680	176004680	+	Missense_Mutation	SNP	A	A	C	rs34767982	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	67.0	33.0	44.0	0.0	0.492537	0	A|0.979;C|0.021	0.021	strong	.	CDHR2	152	.	NM_017675	exon14	c.A1393C	p.M465L	GTCGCCATGGTGA	.	PASS	Atlas-SNP
TMEM240	339453	hgsc.bcm.edu	37	1	1471126	1471126	+	Silent	SNP	G	G	A	rs114114317	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	78.0	30.0	85.0	0.0	0.384615	0	G|0.994;A|0.006	0.006	strong	.	TMEM240	8	.	NM_001114748	exon3	c.C216T	p.D72D	GGAGGCGTCCACC	.	PASS	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	37	10	26455090	26455090	+	Missense_Mutation	SNP	G	G	A	rs34918608	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	18.0	45.0	0.0	0.514286	0	G|0.994;A|0.006	0.006	strong	MYO3A,NS,carcinoma,-1,1	MYO3A	371	1	NM_017433	exon27	c.G3094A	p.A1032T	AACTGGGCTCTTG	.	PASS	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	37	5	74652199	74652199	+	Missense_Mutation	SNP	A	A	G	rs5908	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	183.0	97.0	161.0	0.0	0.530055	0	A|0.990;G|0.010	0.010	strong	.	HMGCR	53	.	NM_000859	exon15	c.A1912G	p.I638V	ACAAGTATAGCTG	.	PASS	Atlas-SNP
OR2B3	442184	hgsc.bcm.edu	37	6	29054923	29054923	+	Missense_Mutation	SNP	A	A	G	rs149723131	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	25.0	85.0	0.0	0.462963	0	A|0.993;G|0.007	0.007	strong	OR2B3,NS,carcinoma,+2,1	OR2B3	44	1	NM_001005226	exon1	c.T103C	p.Y35H	TTGTGTATGATAT	.	PASS	Atlas-SNP
TBX10	347853	hgsc.bcm.edu	37	11	67399173	67399173	+	Missense_Mutation	SNP	C	C	T	rs146672518	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	46.0	26.0	43.0	0.0	0.565217	0	C|0.994;T|0.006	0.006	strong	.	TBX10	25	.	NM_005995	exon8	c.G1061A	p.R354Q	TCAGCCCGGATGT	.	PASS	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	37	19	43268388	43268388	+	Missense_Mutation	SNP	G	G	A	rs142689447	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	105.0	50.0	135.0	0.0	0.47619	0	G|1.000;A|0.000	0.000	strong	.	PSG8	101	.	NM_001130167	exon2	c.C110T	p.T37M	TCAATCGTGACTT	.	PASS	Atlas-SNP
PKD2	5311	hgsc.bcm.edu	37	4	88996673	88996673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	20.0	88.0	0.0	0.215054	0	.	.	none	.	PKD2	82	.	NM_000297	exon15	c.G2734A	p.E912K	CGTGAAGAGTTGG	.	PASS	Atlas-SNP
LRRC40	55631	hgsc.bcm.edu	37	1	70616830	70616830	+	Missense_Mutation	SNP	T	T	C	rs3180401	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	199.0	94.0	204.0	0.0	0.472362	0	T|0.991;C|0.009	0.009	strong	.	LRRC40	66	.	NM_017768	exon13	c.A1498G	p.I500V	GATTGATCGTTTG	.	PASS	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	37	X	123514900	123514900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	55.0	52.0	0.0	1	0	.	.	none	.	.	.	.	NM_001163278	exon32	c.A7685G	p.N2562S	GCATTATTGAGAA	.	PASS	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	37	2	167284444	167284444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	96.0	24.0	92.0	0.0	0.25	0	.	.	none	SCN7A_ENST00000409855,NS,carcinoma,+1,6	SCN7A	410	6	NM_002976	exon17	c.C2707T	p.R903C	ATCCGCGTCTGCA	.	PASS	Atlas-SNP
ZP2	7783	hgsc.bcm.edu	37	16	21213101	21213101	+	Missense_Mutation	SNP	T	T	C	rs201054139	by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	208.0	104.0	210.0	0.0	0.5	0	T|1.000;C|0.000	0.000	strong	.	ZP2	92	.	NM_003460	exon13	c.A1430G	p.N477S	TCAACGTTGATGT	.	PASS	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	37	8	36692303	36692303	+	Splice_Site	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	116.0	61.0	141.0	0.0	0.525862	0	.	.	none	KCNU1_ENST00000399881,colon,carcinoma,0,2	KCNU1	359	2	NM_001031836	exon12	c.1213-1G>T	.	AGGGTAGGTGGAA	.	PASS	Atlas-SNP
GZF1	64412	hgsc.bcm.edu	37	20	23350290	23350290	+	Missense_Mutation	SNP	G	G	A	rs144872945	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	78.0	33.0	80.0	0.0	0.423077	0	G|0.999;A|0.001	0.001	strong	GZF1,NS,adenocarcinoma,0,1	GZF1	61	1	NM_022482	exon4	c.G1697A	p.R566H	GCCACCGCCGCAT	.	PASS	Atlas-SNP
TEKT4	150483	hgsc.bcm.edu	37	2	95539833	95539833	+	Silent	SNP	C	C	T	rs111469930	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	28.0	94.0	0.0	0.430769	0	C|0.988;T|0.012	0.012	strong	.	TEKT4	72	.	NM_144705	exon3	c.C693T	p.Y231Y	TCCGTACTCCACC	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	37	14	91666131	91666131	+	Silent	SNP	C	C	T	rs28481732	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	138.0	69.0	122.0	0.0	0.5	0	C|0.977;T|0.023	0.023	strong	.	C14orf159	57	.	NM_001102368	exon11	c.C1326T	p.A442A	GCGTGCCGGAAGA	.	PASS	Atlas-SNP
FXR2	9513	hgsc.bcm.edu	37	17	7496411	7496411	+	Silent	SNP	G	G	A	rs61730843	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	74.0	41.0	71.0	0.0	0.554054	0	G|0.995;A|0.005	0.005	strong	.	FXR2	44	.	NM_004860	exon13	c.C1419T	p.P473P	GGTTGGGGGATCC	.	PASS	Atlas-SNP
IMMP1L	196294	hgsc.bcm.edu	37	11	31482246	31482246	+	Missense_Mutation	SNP	T	T	C	rs370083551		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	228.0	111.0	220.0	0.0	0.486842	0	.	.	weak	.	IMMP1L	16	.	NM_144981	exon4	c.A121G	p.M41V	GCTCCATTGATGG	.	PASS	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	37	12	101767224	101767224	+	Silent	SNP	C	C	T	rs112278934	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	76.0	35.0	84.0	0.0	0.460526	0	C|0.998;T|0.002	0.002	strong	.	UTP20	222	.	NM_014503	exon53	c.C6924T	p.A2308A	GATCGCCTATCTC	.	PASS	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	37	9	7011719	7011719	+	Missense_Mutation	SNP	T	T	C	rs34369202	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	101.0	39.0	109.0	0.0	0.386139	0	T|0.999;C|0.001	0.001	strong	.	KDM4C	186	.	NM_001146696	exon13	c.T1874C	p.I625T	TGTCCATTGAGGA	.	PASS	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55533805	55533805	+	Silent	SNP	G	G	T	rs144293929	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	27.0	56.0	0.0	0.627907	0	G|0.998;T|0.002	0.002	strong	.	RP1	429	.	NM_006269	exon2	c.G279T	p.T93T	CATCACGCGCCTG	.	PASS	Atlas-SNP
OCA2	4948	hgsc.bcm.edu	37	15	28117060	28117060	+	Silent	SNP	T	T	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	36.0	6.0	52.0	0.0	0.166667	0	.	.	none	.	OCA2	173	.	NM_000275	exon20	c.A2088T	p.A696A	GAGATGTGCCAAT	.	PASS	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	37	11	2436464	2436464	+	Missense_Mutation	SNP	C	C	T	rs34551253	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	10.0	5.0	3.0	0.0	0.5	0	C|0.983;T|0.017	0.017	strong	.	TRPM5	86	.	NM_014555	exon9	c.G1366A	p.A456T	GCCCCGCGGGTGG	.	PASS	Atlas-SNP
TXNDC5	81567	hgsc.bcm.edu	37	6	7910865	7910865	+	Missense_Mutation	SNP	G	G	A	rs183777097	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	11.0	7.0	7.0	0.0	0.636364	0	G|0.966;A|0.034	0.034	strong	.	TXNDC5	33	.	NM_030810	exon1	c.C145T	p.P49S	CGGGGGGCCCGTC	.	PASS	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	37	11	17118730	17118730	+	Silent	SNP	A	A	G	rs113662142	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	19.0	58.0	0.0	0.345455	0	A|0.992;G|0.008	0.008	strong	.	PIK3C2A	148	.	NM_002645	exon26	c.T4200C	p.G1400G	AGGAAGACCAGAA	.	PASS	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	37	21	42064785	42064785	+	Silent	SNP	C	C	T	rs79669041	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	62.0	33.0	49.0	0.0	0.532258	0	C|0.993;T|0.007	0.007	strong	.	DSCAM	347	.	NM_001271534	exon3	c.G459A	p.A153A	GATGTACGCCTCC	.	PASS	Atlas-SNP
ZBP1	81030	hgsc.bcm.edu	37	20	56191475	56191475	+	Silent	SNP	C	C	T	rs16981188	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	118.0	54.0	82.0	0.0	0.457627	0	C|0.967;T|0.033	0.033	strong	.	ZBP1	65	.	NM_001160419	exon2	c.G84A	p.P28P	TTTCACCGGGGAG	.	PASS	Atlas-SNP
PIGS	94005	hgsc.bcm.edu	37	17	26888506	26888506	+	Missense_Mutation	SNP	G	G	C	rs140545278	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	55.0	106.0	0.0	0.495495	0	G|0.999;C|0.001	0.001	strong	.	PIGS	42	.	NM_033198	exon6	c.C610G	p.L204V	CAGCCAGAGCAGC	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3747891	3747891	+	Missense_Mutation	SNP	G	G	A	rs144472063	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	50.0	72.0	0.0	0.543478	0	G|1.000;A|0.000	0.000	strong	.	TJP3	79	.	NM_001267561	exon19	c.G2449A	p.E817K	GACTACGAGACGG	.	PASS	Atlas-SNP
CDKN1A	1026	hgsc.bcm.edu	37	6	36652228	36652228	+	Missense_Mutation	SNP	G	G	A	rs148679597	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	17.0	33.0	0.0	0.377778	0	G|0.998;A|0.002	0.002	strong	.	CDKN1A	27	.	NM_001220778	exon2	c.G350A	p.C117Y	TGTCTTGTACCCT	.	PASS	Atlas-SNP
CNTNAP3B	728577	hgsc.bcm.edu	37	9	43861012	43861012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	52.0	21.0	30.0	0.0	0.403846	0	.	.	none	.	CNTNAP3B	37	.	NM_001201380	exon13	c.C1886T	p.A629V	ACTCCGCGTGGAC	.	PASS	Atlas-SNP
FTO	79068	hgsc.bcm.edu	37	16	53860253	53860253	+	Missense_Mutation	SNP	G	G	A	rs150450891	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	56.0	115.0	0.0	0.543689	0	G|0.999;A|0.001	0.001	strong	.	FTO	51	.	NM_001080432	exon3	c.G601A	p.V201I	TACAACGTAACTT	.	PASS	Atlas-SNP
PSORS1C1	170679	hgsc.bcm.edu	37	6	31106489	31106489	+	Missense_Mutation	SNP	G	G	A	rs1265096	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	45.0	103.0	0.0	0.436893	0	G|0.960;A|0.040	0.040	strong	.	PSORS1C1	11	.	NM_014068	exon5	c.G100A	p.E34K	AGCTCCGAGGAAA	.	PASS	Atlas-SNP
CCDC66	285331	hgsc.bcm.edu	37	3	56650054	56650054	+	Missense_Mutation	SNP	T	T	C	rs111934125	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	116.0	8.0	87.0	0.0	0.0689655	0	C|1.000;|0.000	1.000	weak	CCDC66_ENST00000394672,caecum,carcinoma,0,2	CCDC66	145	2	NM_001141947	exon13	c.T1816C	p.S606P	ACGACTTCTAAGA	.	PASS	Atlas-SNP
SEMA6A	57556	hgsc.bcm.edu	37	5	115782493	115782493	+	Missense_Mutation	SNP	T	T	G	rs200578077	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	34.0	65.0	0.0	0.453333	0	T|0.997;G|0.003	0.003	strong	.	SEMA6A	93	.	NM_020796	exon19	c.A2909C	p.Q970P	TGCACCTGGATGG	.	PASS	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	37	7	138602865	138602865	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	58.0	32.0	31.0	0.0	0.551724	0	.	.	none	.	KIAA1549	314	.	NM_020910	exon2	c.A1507C	p.T503P	CACTCGTCTCTGA	.	PASS	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	37	9	712052	712052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	44.0	105.0	0.0	0.478261	0	.	.	none	.	KANK1	231	.	NM_001256876	exon7	c.C1286T	p.T429I	TAGGGACACTTGT	.	PASS	Atlas-SNP
TMEM230	29058	hgsc.bcm.edu	37	20	5086918	5086918	+	Silent	SNP	G	G	A	rs147693982	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	43.0	88.0	0.0	0.530864	0	G|0.990;A|0.010	0.010	strong	.	.	.	.	NM_001009923	exon4	c.C327T	p.I109I	AAGTGCGATGGCC	.	PASS	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	37	10	7774397	7774397	+	Missense_Mutation	SNP	A	A	G	rs141156651	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	76.0	39.0	84.0	0.0	0.513158	0	A|1.000;G|0.000	0.000	weak	.	ITIH2	144	.	NM_002216	exon14	c.A1744G	p.K582E	ACCAGGAAACTGT	.	PASS	Atlas-SNP
CAPZA3	93661	hgsc.bcm.edu	37	12	18891966	18891966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	31.0	9.0	23.0	0.0	0.290323	0	.	.	none	.	CAPZA3	51	.	NM_033328	exon1	c.T764C	p.I255T	GAAAAATTCTACG	.	PASS	Atlas-SNP
TM4SF19	116211	hgsc.bcm.edu	37	3	196050862	196050862	+	Missense_Mutation	SNP	A	A	G	rs36016914	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	76.0	22.0	52.0	0.0	0.289474	0	A|0.989;G|0.011	0.011	strong	.	TM4SF19	21	.	NM_001204897	exon5	c.T452C	p.I151T	ATACAGATAATTC	.	PASS	Atlas-SNP
PTH2R	5746	hgsc.bcm.edu	37	2	209358262	209358262	+	Missense_Mutation	SNP	G	G	A	rs140566891	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	179.0	96.0	136.0	0.0	0.536313	0	G|0.999;A|0.001	0.001	strong	.	PTH2R	92	.	NM_005048	exon13	c.G1531A	p.E511K	TTCCACGAGGAGA	.	PASS	Atlas-SNP
TTK	7272	hgsc.bcm.edu	37	6	80718167	80718167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	47.0	10.0	50.0	0.0	0.212766	0	.	.	none	.	TTK	199	.	NM_003318	exon4	c.G427A	p.A143T	AAATTTGCTTTTG	.	PASS	Atlas-SNP
LILRB4	11006	hgsc.bcm.edu	37	19	55179184	55179184	+	Silent	SNP	T	T	C	rs61743358	byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	214.0	22.0	238.0	0.0	0.102804	0	T|0.633;C|0.367	0.367	strong	.	LILRB4	86	.	NM_006847	exon11	c.T1140C	p.S380S	ACTGTCTGGGGAA	.	PASS	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	37	3	121207449	121207449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	107.0	19.0	87.0	0.0	0.17757	0	.	.	none	.	POLQ	273	.	NM_199420	exon16	c.T4329G	p.N1443K	AAAACTATTTAAT	.	PASS	Atlas-SNP
FBXO24	26261	hgsc.bcm.edu	37	7	100197690	100197690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	185.0	49.0	225.0	0.0	0.264865	0	.	.	none	.	FBXO24	125	.	NM_012172	exon9	c.G1357A	p.G453S	TGGTGCGGCCTCA	.	PASS	Atlas-SNP
AHRR	57491	hgsc.bcm.edu	37	5	422858	422858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	119.0	53.0	107.0	0.0	0.445378	0	.	.	none	.	AHRR	67	.	NM_001242412	exon6	c.C468G	p.H156Q	AATGCACCAGAAC	.	PASS	Atlas-SNP
ETS2	2114	hgsc.bcm.edu	37	21	40190408	40190408	+	Missense_Mutation	SNP	C	C	A	rs61735785	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	69.0	32.0	61.0	0.0	0.463768	0	C|0.993;A|0.007	0.007	strong	.	ETS2	87	.	NM_001256295	exon8	c.C1069A	p.L357I	GGCGGCCTCCTGG	.	PASS	Atlas-SNP
BACE1	23621	hgsc.bcm.edu	37	11	117186506	117186506	+	Silent	SNP	G	G	A	rs28917234	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	20.0	12.0	0.0	0.0	0.6	.	G|0.979;A|0.021	0.021	strong	.	BACE1	33	.	NM_138972	exon1	c.C6T	p.A2A	GGCTTGGGCCATG	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112622244	112622244	+	Missense_Mutation	SNP	A	A	G	rs369692553		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	36.0	18.0	30.0	0.0	0.5	0	.	.	weak	.	.	.	.	NM_001109662	exon61	c.T10124C	p.V3375A	GGATCCACAGAGA	.	PASS	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	37	5	36985274	36985274	+	Silent	SNP	C	C	T	rs116049172	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	121.0	68.0	94.0	0.0	0.561983	0	C|1.000;T|0.000	0.000	strong	.	NIPBL	513	.	NM_015384	exon10	c.C1992T	p.N664N	ACAAAACGAGAGC	.	PASS	Atlas-SNP
CYP2A6	1548	hgsc.bcm.edu	37	19	41351321	41351321	+	Missense_Mutation	SNP	C	C	T	rs78337605	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	248.0	11.0	184.0	0.0	0.0443548	0	C|0.500;T|0.500	0.500	strong	.	CYP2A6	69	.	NM_000762	exon7	c.G1039A	p.A347T	TCTTGGCCCGGTC	.	PASS	Atlas-SNP
KLHL30	377007	hgsc.bcm.edu	37	2	239059578	239059578	+	Missense_Mutation	SNP	G	G	A	rs369686635		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	138.0	65.0	138.0	0.0	0.471014	0	.	.	weak	.	KLHL30	79	.	NM_198582	exon8	c.G1609A	p.D537N	GCCTACGACACGG	.	PASS	Atlas-SNP
EMR2	30817	hgsc.bcm.edu	37	19	14854338	14854338	+	Missense_Mutation	SNP	C	C	T	rs117617387	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	190.0	99.0	169.0	1.0	0.521053	0.00591716	C|0.989;T|0.011	0.011	strong	EMR2,NS,carcinoma,+1,1	EMR2	99	1	NM_013447	exon20	c.G2357A	p.R786Q	TGCTCCCGGACCT	.	scavenged	Atlas-SNP
FITM1	161247	hgsc.bcm.edu	37	14	24600828	24600828	+	Missense_Mutation	SNP	C	C	T	rs147792464	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	101.0	46.0	123.0	0.0	0.455446	0	C|1.000;T|0.000	0.000	weak	.	FITM1	25	.	NM_203402	exon1	c.C56T	p.A19V	TCCAGGCACTGCT	.	PASS	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	37	19	31039669	31039669	+	Missense_Mutation	SNP	C	C	T	rs77238711	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	22.0	28.0	0.0	0.628571	0	C|0.970;T|0.030	0.030	strong	.	ZNF536	424	.	NM_014717	exon4	c.C3143T	p.A1048V	GGGAGGCGAGTAA	.	PASS	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	37	8	25149612	25149612	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	69.0	16.0	51.0	0.0	0.231884	0	.	.	none	.	DOCK5	167	.	NM_024940	exon6	c.C394T	p.L132L	CAGATCCTGTCTG	.	PASS	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85958847	85958847	+	Silent	SNP	C	C	T	rs148125234	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	94.0	39.0	98.0	0.0	0.414894	0	C|0.999;T|0.001	0.001	strong	.	CDHR1	122	.	NM_001171971	exon5	c.C408T	p.I136I	GTTCATCCAGGAG	.	PASS	Atlas-SNP
LPPR1	0	hgsc.bcm.edu	37	9	104032338	104032338	+	Silent	SNP	C	C	T	rs7847596	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	110.0	61.0	116.0	0.0	0.554545	0	C|0.973;T|0.027	0.027	strong	.	.	.	.	NM_207299	exon3	c.C240T	p.T80T	TGCCACCCCAACT	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	37	14	91666248	91666248	+	Silent	SNP	T	T	C	rs28715808	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	120.0	60.0	125.0	0.0	0.5	0	T|0.967;C|0.033	0.033	strong	.	C14orf159	57	.	NM_001102368	exon11	c.T1443C	p.T481T	ATCAACTGGTAAG	.	PASS	Atlas-SNP
WDR90	197335	hgsc.bcm.edu	37	16	703648	703648	+	Missense_Mutation	SNP	A	A	G	rs143047488	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	61.0	34.0	94.0	0.0	0.557377	0	A|0.997;G|0.003	0.003	strong	.	WDR90	107	.	NM_145294	exon12	c.A1357G	p.M453V	AGCCCAATGCACG	.	PASS	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13700783	13700783	+	Missense_Mutation	SNP	C	C	G	rs374221053		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	155.0	75.0	173.0	0.0	0.483871	0	.	.	weak	.	DNAH5	868	.	NM_001369	exon78	c.G13689C	p.L4563F	AGGCATCAACTCA	.	PASS	Atlas-SNP
ACTR3C	653857	hgsc.bcm.edu	37	7	149981856	149981856	+	Missense_Mutation	SNP	G	G	A	rs117425825	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	61.0	35.0	58.0	0.0	0.57377	0	G|0.976;A|0.024	0.024	strong	.	.	.	.	NM_001164459	exon6	c.C550T	p.R184C	GCGGACGCCGCAC	.	PASS	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	37	9	139835558	139835558	+	Missense_Mutation	SNP	C	C	T	rs45559439	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	39.0	73.0	0.0	0.481481	0	C|0.985;T|0.015	0.015	strong	.	FBXW5	36	.	NM_018998	exon9	c.G1523A	p.R508Q	TCGTGCCGCAGCC	.	PASS	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	37	X	10085602	10085602	+	Silent	SNP	A	A	C	rs56130457	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	27.0	27.0	25.0	0.0	1	0	A|0.995;C|0.005	0.005	strong	.	WWC3	142	.	NM_015691	exon11	c.A1503C	p.A501A	GCGGGCACACGCC	.	PASS	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	37	1	55119637	55119637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	147.0	77.0	171.0	0.0	0.52381	0	.	.	none	.	.	.	.	NM_001039464	exon3	c.C1038G	p.S346R	GTTCAGCGACACC	.	PASS	Atlas-SNP
PARL	55486	hgsc.bcm.edu	37	3	183580581	183580581	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	30.0	46.0	0.0	0.416667	0	.	.	none	.	PARL	32	.	NM_018622	exon4	c.G471A	p.K157K	CCACCACTTGTTA	.	PASS	Atlas-SNP
AGMAT	79814	hgsc.bcm.edu	37	1	15905471	15905471	+	Missense_Mutation	SNP	G	G	T	rs116813534	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	51.0	86.0	0.0	0.607143	0	A|0.007;G|0.993;T|0.000	0.000	strong	.	AGMAT	25	.	NM_024758	exon4	c.C603A	p.H201Q	CGCCCCGTGGTAG	.	PASS	Atlas-SNP
LDB3	11155	hgsc.bcm.edu	37	10	88466465	88466465	+	Silent	SNP	C	C	T	rs45459491	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	164.0	71.0	139.0	0.0	0.432927	0	C|0.976;T|0.024	0.024	strong	.	LDB3	164	.	NM_007078	exon7	c.C1074T	p.A358A	TCCTGCCGACAGC	.	PASS	Atlas-SNP
LAMP2	3920	hgsc.bcm.edu	37	X	119576455	119576455	+	Silent	SNP	G	G	A	rs73219144	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	38.0	36.0	46.0	0.0	0.947368	0	G|0.975;A|0.025	0.025	strong	.	LAMP2	101	.	NM_013995	exon7	c.C927T	p.S309S	CTTACCGGAGCCA	.	PASS	Atlas-SNP
CDC16	8881	hgsc.bcm.edu	37	13	115002275	115002275	+	Silent	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	4.0	91.0	0.0	0.047619	0	.	.	none	.	CDC16	50	.	NM_003903	exon3	c.A105G	p.E35E	TCCAGAAGAACCC	.	PASS	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178552115	178552115	+	Silent	SNP	G	G	A	rs201215425	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	169.0	70.0	148.0	0.0	0.414201	0	.	.	weak	.	ADAMTS2	190	.	NM_014244	exon19	c.C2817T	p.S939S	GCGCACGGAGCGC	.	PASS	Atlas-SNP
ARHGEF19	128272	hgsc.bcm.edu	37	1	16525657	16525657	+	Missense_Mutation	SNP	A	A	G	rs148325785	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	144.0	72.0	161.0	0.0	0.5	0	A|0.991;G|0.009	0.009	strong	.	ARHGEF19	49	.	NM_153213	exon15	c.T2239C	p.W747R	TGGTCCAGGTCCT	.	PASS	Atlas-SNP
NPAS2	4862	hgsc.bcm.edu	37	2	101541736	101541736	+	Missense_Mutation	SNP	G	G	C	rs138995271	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	165.0	68.0	145.0	0.0	0.412121	0	G|0.999;C|0.001	0.001	strong	.	NPAS2	88	.	NM_002518	exon3	c.G161C	p.G54A	TCATCGGATTTTT	.	PASS	Atlas-SNP
WDR90	197335	hgsc.bcm.edu	37	16	716971	716971	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	100.0	51.0	113.0	0.0	0.51	0	.	.	none	.	WDR90	107	.	NM_145294	exon40	c.C5071T	p.L1691L	CACCTCCTGGCTG	.	PASS	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	37	18	59195294	59195294	+	Missense_Mutation	SNP	A	A	G	rs35923922	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	185.0	113.0	181.0	0.0	0.610811	0	A|0.992;G|0.008	0.008	strong	CDH20,NS,carcinoma,+1,1	CDH20	117	1	NM_031891	exon6	c.A1112G	p.Q371R	CATTTCAGGACAC	.	PASS	Atlas-SNP
OR8B4	283162	hgsc.bcm.edu	37	11	124294213	124294213	+	Missense_Mutation	SNP	C	C	A	rs61736181	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	121.0	58.0	117.0	0.0	0.479339	0	C|0.982;A|0.018	0.018	strong	.	OR8B4	60	.	NM_001005196	exon1	c.G555T	p.Q185H	GGAGAGCTGCAAG	.	PASS	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104640098	104640098	+	Silent	SNP	G	G	A	rs61745565	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	56.0	31.0	31.0	0.0	0.553571	0	G|0.981;A|0.019	0.019	strong	.	KIF26A	84	.	NM_015656	exon10	c.G1923A	p.A641A	GGCGGCGGCTGGC	.	PASS	Atlas-SNP
MYOG	4656	hgsc.bcm.edu	37	1	203054651	203054651	+	Missense_Mutation	SNP	G	G	A	rs61745017	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	138.0	82.0	109.0	0.0	0.594203	0	G|0.979;A|0.021	0.021	strong	.	MYOG	28	.	NM_002479	exon1	c.C439T	p.R147C	GGTAGCGGAGGTC	.	PASS	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	37	3	407785	407785	+	Missense_Mutation	SNP	A	A	G	rs143907501	byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	60.0	65.0	0.0	0.645161	0	A|1.000;G|0.000	0.000	strong	.	CHL1	242	.	NM_001253388	exon13	c.A1738G	p.T580A	AATGGCACAGAAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179611875	179611875	+	Silent	SNP	A	A	G	rs61233923	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	162.0	20.0	133.0	0.0	0.123457	0	A|0.963;G|0.037	0.037	strong	.	TTN	18412	.	NM_133379	exon46	c.T15252C	p.Y5084Y	TGTGGAATATCTC	.	PASS	Atlas-SNP
GABRA3	2556	hgsc.bcm.edu	37	X	151358333	151358333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	13.0	33.0	0.0	0.288889	0	.	.	none	.	GABRA3	97	.	NM_000808	exon9	c.A1012G	p.M338V	AGTCCATGGCCGT	.	PASS	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	37	6	161507618	161507618	+	Silent	SNP	C	C	T	rs145569434	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	45.0	78.0	0.0	0.494505	0	C|0.994;T|0.006	0.006	strong	.	MAP3K4	364	.	NM_006724	exon9	c.C2475T	p.D825D	CTAGGACCTGGAA	.	PASS	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	37	5	176005481	176005481	+	Missense_Mutation	SNP	G	G	A	rs61743422	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	38.0	75.0	0.0	0.584615	0	G|0.987;A|0.013	0.013	strong	.	CDHR2	152	.	NM_017675	exon16	c.G1690A	p.G564R	GACGGCGGGAACC	.	PASS	Atlas-SNP
ACO1	48	hgsc.bcm.edu	37	9	32433803	32433803	+	Silent	SNP	C	C	A	rs61752944	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	61.0	26.0	68.0	0.0	0.42623	0	C|0.999;A|0.001	0.001	strong	.	ACO1	149	.	NM_002197	exon16	c.C1929A	p.I643I	GTATATCAAATCA	.	PASS	Atlas-SNP
A4GALT	53947	hgsc.bcm.edu	37	22	43089833	43089833	+	Missense_Mutation	SNP	A	A	G	rs148881382	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	44.0	71.0	0.0	0.488889	0	A|1.000;G|0.000	0.000	weak	.	A4GALT	35	.	NM_017436	exon3	c.T125C	p.V42A	CCCACAACGTGCC	.	PASS	Atlas-SNP
CCDC7	221016	hgsc.bcm.edu	37	10	32780886	32780886	+	Missense_Mutation	SNP	T	T	C	rs145255525	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	68.0	36.0	86.0	0.0	0.529412	0	T|1.000;C|0.000	0.000	strong	.	CCDC7	47	.	NM_145023	exon10	c.T833C	p.M278T	ATGCCATGTTGAA	.	PASS	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	37	8	145634452	145634452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	107.0	51.0	92.0	0.0	0.476636	0	.	.	none	.	CPSF1	92	.	NM_013291	exon2	c.G91A	p.V31I	CCACTACCAGGTT	.	PASS	Atlas-SNP
SEC16B	89866	hgsc.bcm.edu	37	1	177933344	177933344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	43.0	61.0	0.0	0.472527	0	.	.	none	.	SEC16B	92	.	NM_033127	exon5	c.T604C	p.F202L	CTGGAAACAGCTC	.	PASS	Atlas-SNP
TTC39A	22996	hgsc.bcm.edu	37	1	51754619	51754619	+	Missense_Mutation	SNP	T	T	C	rs138509677	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	130.0	70.0	101.0	0.0	0.538462	0	T|0.999;C|0.001	0.001	strong	.	TTC39A	40	.	NM_001144832	exon17	c.A1514G	p.K505R	TTAATCTTCTTTT	.	PASS	Atlas-SNP
MBIP	51562	hgsc.bcm.edu	37	14	36784062	36784062	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	148.0	57.0	119.0	0.0	0.385135	0	.	.	none	.	MBIP	25	.	NM_016586	exon3	c.G309C	p.E103D	TCCTATCTCTTCA	.	PASS	Atlas-SNP
ELF3	1999	hgsc.bcm.edu	37	1	201981774	201981774	+	Missense_Mutation	SNP	G	G	A	rs55729978	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	66.0	41.0	65.0	0.0	0.621212	0	G|0.938;A|0.062	0.062	strong	ELF3_ENST00000359651,NS,carcinoma,0,2	ELF3	92	2	NM_001114309	exon5	c.G485A	p.G162D	ACCAGGGCAGCCC	.	PASS	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	37	3	38136476	38136476	+	Missense_Mutation	SNP	G	G	A	rs34290809	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	142.0	55.0	112.0	0.0	0.387324	0	G|0.998;A|0.002	0.002	strong	.	DLEC1	278	.	NM_007337	exon13	c.G2026A	p.E676K	GACAAGGAGACTG	.	PASS	Atlas-SNP
ZSCAN22	342945	hgsc.bcm.edu	37	19	58850357	58850357	+	Missense_Mutation	SNP	G	G	A	rs138944686	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	47.0	20.0	28.0	0.0	0.425532	0	G|0.986;A|0.014	0.014	strong	.	ZSCAN22	47	.	NM_181846	exon3	c.G1141A	p.E381K	CCCTACGAGTGTG	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	37	7	116436022	116436022	+	Silent	SNP	G	G	A	rs2023748	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	174.0	174.0	179.0	0.0	1	0	G|0.618;A|0.382	0.382	strong	MET,NS,carcinoma,0,1	MET	412	1	NM_001127500	exon21	c.G4071A	p.A1357A	ATCAGCGATCTTC	.	PASS	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	37	14	73726151	73726151	+	Missense_Mutation	SNP	A	A	G	rs17182244	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	124.0	60.0	135.0	0.0	0.483871	0	A|0.976;G|0.024	0.024	strong	.	PAPLN	180	.	NM_173462	exon15	c.A1802G	p.H601R	GGCCCCACGACTG	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49426818	49426818	+	Silent	SNP	G	G	A	rs376471354		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	29.0	58.0	0.0	0.453125	0	.	.	weak	.	MLL2	1173	.	NM_003482	exon39	c.C11670T	p.S3890S	CTGAGCGCTCAGT	.	PASS	Atlas-SNP
SP100	6672	hgsc.bcm.edu	37	2	231327184	231327184	+	Silent	SNP	C	C	T	rs35985492	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	124.0	54.0	95.0	0.0	0.435484	0	C|0.992;T|0.008	0.008	strong	.	SP100	167	.	NM_001206702	exon10	c.C1008T	p.D336D	CACTGACGTTGAT	.	PASS	Atlas-SNP
COPS7B	64708	hgsc.bcm.edu	37	2	232653358	232653358	+	Silent	SNP	C	C	T	rs11557625	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	98.0	47.0	71.0	0.0	0.479592	0	C|0.988;T|0.012	0.012	strong	.	COPS7B	14	.	NM_022730	exon2	c.C78T	p.A26A	CTCAGCCCTCACT	.	PASS	Atlas-SNP
ZNF653	115950	hgsc.bcm.edu	37	19	11598288	11598288	+	Silent	SNP	G	G	C	rs145806085	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	23.0	53.0	0.0	0.534884	0	G|0.998;C|0.002	0.002	strong	.	ZNF653	48	.	NM_138783	exon4	c.C990G	p.L330L	GGCCGTGAGAGCG	.	PASS	Atlas-SNP
FAM78B	149297	hgsc.bcm.edu	37	1	166039512	166039512	+	Missense_Mutation	SNP	C	C	G	rs138713518	bycluster;alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	285.0	51.0	177.0	0.0	0.178947	0	C|1.000;T|0.000	.	alt	FAM78B,NS,carcinoma,+1,1	FAM78B	51	1	NM_001017961	exon2	c.G752C	p.R251P	GGCCCCCGCTTGG	.	PASS	Atlas-SNP
CNGA2	1260	hgsc.bcm.edu	37	X	150908168	150908168	+	Missense_Mutation	SNP	G	G	T	rs144366408	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	44.0	39.0	0.0	1	0	G|0.994;T|0.006	0.006	strong	.	CNGA2	136	.	NM_005140	exon4	c.G338T	p.G113V	GGGATGGCAAAGG	.	PASS	Atlas-SNP
IFNLR1	163702	hgsc.bcm.edu	37	1	24496085	24496085	+	Silent	SNP	G	G	A	rs34654982	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	41.0	75.0	0.0	0.488095	0	G|0.897;A|0.103	0.103	strong	.	.	.	.	NM_170743	exon3	c.C189T	p.P63P	ACGGGTGGGAGAG	.	PASS	Atlas-SNP
CCDC78	124093	hgsc.bcm.edu	37	16	775236	775236	+	Splice_Site	SNP	C	C	T	rs138669350	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	34.0	59.0	0.0	0.523077	0	C|0.998;T|0.002	0.002	strong	.	CCDC78	26	.	NM_001031737	exon6	c.492+1G>A	.	CACTCACGCCGCT	.	PASS	Atlas-SNP
ZKSCAN5	23660	hgsc.bcm.edu	37	7	99129744	99129744	+	Missense_Mutation	SNP	G	G	C	rs150395462	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	21.0	54.0	0.0	0.466667	0	G|0.996;C|0.004	0.004	strong	.	ZKSCAN5	63	.	NM_145102	exon7	c.G2392C	p.E798Q	ACTGGTGAGAAAC	.	PASS	Atlas-SNP
ENTPD5	957	hgsc.bcm.edu	37	14	74444009	74444009	+	Silent	SNP	G	G	A	rs143835358	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	20.0	25.0	0.0	0.465116	0	G|0.998;A|0.002	0.002	strong	.	ENTPD5	26	.	NM_001249	exon7	c.C510T	p.S170S	TTCGTCGGATCCA	.	PASS	Atlas-SNP
WNT16	51384	hgsc.bcm.edu	37	7	120969825	120969825	+	Silent	SNP	C	C	A	rs17143291	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	15.0	9.0	14.0	0.0	0.6	0	C|0.988;A|0.012	0.012	strong	.	WNT16	97	.	NM_057168	exon2	c.C300A	p.T100T	CACTACCGCCCCG	.	PASS	Atlas-SNP
CATSPER1	117144	hgsc.bcm.edu	37	11	65789004	65789004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	31.0	36.0	0.0	0.430556	0	.	.	none	.	CATSPER1	101	.	NM_053054	exon4	c.C1654T	p.R552W	GGGCCCGCAGGCT	.	PASS	Atlas-SNP
RHO	6010	hgsc.bcm.edu	37	3	129247936	129247936	+	Silent	SNP	C	C	T	rs79765751	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	23.0	64.0	0.0	0.353846	0	C|0.996;T|0.004	0.004	strong	.	RHO	57	.	NM_000539	exon1	c.C360T	p.G120G	CCTGGGCGGTATG	.	PASS	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	37	1	145555699	145555699	+	Missense_Mutation	SNP	G	G	A	rs141350599	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	67.0	38.0	76.0	0.0	0.567164	0	G|0.998;A|0.002	0.002	strong	.	ANKRD35	96	.	NM_144698	exon2	c.G47A	p.R16K	TGGAGAGATGGAA	.	PASS	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	37	15	44890486	44890486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	152.0	68.0	123.0	0.0	0.447368	0	.	.	none	.	SPG11	207	.	NM_025137	exon23	c.C3978G	p.S1326R	CTGAATGCTGTTC	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84608900	84608900	+	Missense_Mutation	SNP	C	C	T	rs75742550	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	32.0	80.0	0.0	0.444444	0	C|0.993;T|0.007	0.007	strong	.	.	.	.	NM_001001670	exon4	c.C3515T	p.T1172I	CACTGACAAATGT	.	PASS	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	37	5	148388512	148388512	+	Missense_Mutation	SNP	C	C	T	rs139192433	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	35.0	93.0	0.0	0.466667	0	C|0.998;T|0.002	0.002	strong	.	SH3TC2	178	.	NM_024577	exon15	c.G3380A	p.R1127Q	AAAATCCGGAGCT	.	PASS	Atlas-SNP
CNTNAP1	8506	hgsc.bcm.edu	37	17	40839829	40839829	+	Missense_Mutation	SNP	G	G	A	rs375309204		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	86.0	23.0	101.0	0.0	0.267442	0	.	.	weak	.	CNTNAP1	116	.	NM_003632	exon8	c.G1136A	p.R379H	TCCCACGCCGTGG	.	PASS	Atlas-SNP
CRLF1	9244	hgsc.bcm.edu	37	19	18710496	18710496	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	135.0	69.0	105.0	0.0	0.511111	0	.	.	none	.	CRLF1	32	.	NM_004750	exon2	c.C276T	p.N92N	GGAGGCGTTGAGT	.	PASS	Atlas-SNP
SESTD1	91404	hgsc.bcm.edu	37	2	179986553	179986553	+	Silent	SNP	T	T	C	rs56336305	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	32.0	62.0	0.0	0.426667	0	T|0.982;C|0.018	0.018	strong	.	SESTD1	66	.	NM_178123	exon13	c.A1386G	p.K462K	ATTTTCTTTATTT	.	PASS	Atlas-SNP
SIRT1	23411	hgsc.bcm.edu	37	10	69644820	69644820	+	Missense_Mutation	SNP	C	C	A	rs182199697	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	27.0	32.0	0.0	0.627907	0	C|0.989;A|0.011	0.011	strong	.	SIRT1	38	.	NM_012238	exon1	c.C341A	p.P114Q	GGGAGCCACCGCT	.	PASS	Atlas-SNP
ELL	8178	hgsc.bcm.edu	37	19	18583657	18583657	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	28.0	12.0	22.0	0.0	0.428571	0	.	.	none	.	ELL	52	.	NM_006532	exon2	c.A171G	p.Q57Q	GCTTCCTTGAAAT	.	PASS	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	37	1	156941607	156941607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	33.0	42.0	0.0	0.515625	0	.	.	none	.	ARHGEF11	168	.	NM_198236	exon8	c.G584A	p.R195H	CAGATACGCTAGG	.	PASS	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124355003	124355003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	40.0	63.0	0.0	0.43956	0	.	.	none	.	DNAH10	888	.	NM_207437	exon43	c.C7256T	p.A2419V	TTCATGCCCCCGA	.	PASS	Atlas-SNP
ZNF879	345462	hgsc.bcm.edu	37	5	178455114	178455114	+	Missense_Mutation	SNP	A	A	G	rs146216019	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	46.0	95.0	0.0	0.630137	0	A|0.996;G|0.004	0.004	strong	.	ZNF879	41	.	NM_001136116	exon4	c.A242G	p.Q81R	TTCCCCAAGGCGC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230440	23230440	+	Splice_Site	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	86.0	29.0	97.0	0.0	0.337209	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.100+1G>A	.	GGGCAGGTAAGGG	.	PASS	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	37	11	121498410	121498410	+	Missense_Mutation	SNP	G	G	A	rs146742626		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	40.0	70.0	0.0	0.444444	0	G|1.000;A|0.000	0.000	weak	.	SORL1	218	.	NM_003105	exon47	c.G6511A	p.A2171T	TTCACCGCCTTCG	.	PASS	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	37	22	45750920	45750920	+	Silent	SNP	A	A	G	rs61748560	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	170.0	85.0	180.0	0.0	0.5	0	A|0.989;G|0.011	0.011	strong	.	SMC1B	215	.	NM_148674	exon20	c.T3037C	p.L1013L	TCAGTAAGATATC	.	PASS	Atlas-SNP
MIPEP	4285	hgsc.bcm.edu	37	13	24443512	24443512	+	Missense_Mutation	SNP	T	T	G	rs149856612	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	37.0	83.0	0.0	0.672727	0	T|1.000;G|0.000	0.000	strong	.	MIPEP	53	.	NM_005932	exon7	c.A862C	p.S288R	CTCTGCTGCTGAG	.	PASS	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	37	19	44932704	44932704	+	Missense_Mutation	SNP	T	T	C	rs375182987	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	173.0	88.0	135.0	0.0	0.508671	0	.	.	weak	.	ZNF229	123	.	NM_014518	exon6	c.A2252G	p.Q751R	GAGCTCTGACTAT	.	PASS	Atlas-SNP
NFKB1	4790	hgsc.bcm.edu	37	4	103518700	103518700	+	Missense_Mutation	SNP	A	A	G	rs4648072	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	48.0	72.0	0.0	1	0	A|0.984;G|0.016	0.016	strong	.	NFKB1	78	.	NM_003998	exon15	c.A1519G	p.M507V	AAGGCTATGCAGC	.	PASS	Atlas-SNP
ITGAE	3682	hgsc.bcm.edu	37	17	3664361	3664361	+	Missense_Mutation	SNP	T	T	C	rs140947594	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	26.0	13.0	26.0	0.0	0.5	0	T|0.996;C|0.004	0.004	strong	.	ITGAE	96	.	NM_002208	exon6	c.A544G	p.K182E	CCTCCTTCTCCAG	.	PASS	Atlas-SNP
PRKCB	5579	hgsc.bcm.edu	37	16	24046861	24046861	+	Silent	SNP	T	T	C	rs116345778	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	121.0	47.0	94.0	0.0	0.38843	0	T|0.993;C|0.007	0.007	strong	.	PRKCB	383	.	NM_212535	exon5	c.T522C	p.I174I	CCTCATTGTCCTC	.	PASS	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	37	9	32543801	32543801	+	Missense_Mutation	SNP	G	G	A	rs41272913	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	27.0	63.0	0.0	0.473684	0	G|0.999;A|0.001	0.001	strong	.	TOPORS	127	.	NM_005802	exon3	c.C722T	p.T241M	TCTGCCGTAGTTG	.	PASS	Atlas-SNP
SERPINI2	5276	hgsc.bcm.edu	37	3	167170788	167170788	+	Silent	SNP	G	G	A	rs61750373	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	204.0	75.0	184.0	0.0	0.367647	0	G|0.996;A|0.004	0.004	strong	.	SERPINI2	85	.	NM_001012303	exon7	c.C930T	p.D310D	CAAAACGTCTTTG	.	PASS	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	37	5	140256729	140256729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	21.0	8.0	11.0	0.0	0.380952	0	.	.	none	.	PCDHA12	196	.	NM_018903	exon1	c.G1672A	p.E558K	CTGGACGAGAACG	.	PASS	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	37	2	74596527	74596527	+	Missense_Mutation	SNP	C	C	T	rs17721059	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	180.0	88.0	131.0	0.0	0.488889	0	C|0.985;T|0.015	0.015	strong	.	DCTN1	110	.	NM_004082	exon14	c.G1484A	p.R495Q	CGAACCCGCGCGC	.	PASS	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	37	17	21318826	21318826	+	Missense_Mutation	SNP	G	G	A	rs142399667	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	192.0	26.0	160.0	0.0	0.135417	0	G|0.993;A|0.007	0.007	strong	KCNJ12,NS,carcinoma,0,1	.	.	1	NM_001194958	exon3	c.G172A	p.A58T	GAGTTCGCCAACA	.	PASS	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	37	5	140856349	140856349	+	Silent	SNP	A	A	G	rs115808055	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	23.0	16.0	40.0	0.0	0.695652	0	A|0.990;G|0.010	0.010	strong	.	PCDHGC3	173	.	NM_032402	exon1	c.A666G	p.P222P	GACCCCAGCTCTC	.	PASS	Atlas-SNP
ZNF418	147686	hgsc.bcm.edu	37	19	58437767	58437767	+	Missense_Mutation	SNP	C	C	A	rs199612939	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	53.0	8.0	87.0	0.0	0.150943	0	C|0.989;A|0.011	0.011	strong	.	ZNF418	76	.	NM_133460	exon4	c.G1782T	p.R594S	ACATTCCCTGCAT	.	PASS	Atlas-SNP
GJB4	127534	hgsc.bcm.edu	37	1	35226963	35226963	+	Silent	SNP	C	C	T	rs142720849	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	125.0	63.0	139.0	0.0	0.504	0	C|0.996;T|0.004	0.004	strong	GJB4,NS,carcinoma,0,1	GJB4	51	1	NM_153212	exon2	c.C108T	p.Y36Y	GGTGTACGTGGTG	.	PASS	Atlas-SNP
OSBPL3	26031	hgsc.bcm.edu	37	7	24905795	24905795	+	Missense_Mutation	SNP	C	C	T	rs201132926	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	135.0	39.0	98.0	0.0	0.288889	0	.	.	weak	.	OSBPL3	100	.	NM_145321	exon6	c.G443A	p.R148H	TTCTGACGATACA	.	PASS	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	37	12	29649191	29649191	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	37.0	7.0	35.0	0.0	0.189189	0	.	.	none	.	OVCH1	195	.	NM_183378	exon3	c.G204A	p.E68E	GTGGTGCTCATCT	.	PASS	Atlas-SNP
BRAF	673	hgsc.bcm.edu	37	7	140453155	140453155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	71.0	20.0	74.0	0.0	0.28169	0	.	.	none	BRAF,rectum,carcinoma,0,77	BRAF	36346	77	NM_004333	exon15	c.G1780A	p.D594N	CAAAATCACCTAT	.	PASS	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	37	3	61975387	61975387	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	108.0	61.0	76.0	0.0	0.564815	0	.	.	none	PTPRG,NS,carcinoma,0,1	PTPRG	153	1	NM_002841	exon3	c.G279A	p.A93A	GTATGCGCGTGTT	.	PASS	Atlas-SNP
CLNK	116449	hgsc.bcm.edu	37	4	10502936	10502936	+	Missense_Mutation	SNP	G	G	A	rs190441710	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	101.0	50.0	110.0	0.0	0.49505	0	G|0.998;A|0.002	0.002	strong	.	CLNK	85	.	NM_052964	exon18	c.C1084T	p.R362C	GGAAGCGTATTTT	.	PASS	Atlas-SNP
GPM6A	2823	hgsc.bcm.edu	37	4	176573028	176573028	+	Silent	SNP	T	T	C	rs72702639	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	39.0	64.0	0.0	0.534247	0	T|0.986;C|0.014	0.014	strong	.	GPM6A	70	.	NM_201591	exon4	c.A498G	p.T166T	CACTAATGTGGTG	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230312	23230312	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	125.0	43.0	111.0	0.0	0.344	0	.	.	none	IGLL5,NS,lymphoid_neoplasm,-2,1	IGLL5	26	1	NM_001178126	exon1	c.C79T	p.L27L	CCCCTGCTGCTGC	.	PASS	Atlas-SNP
IL33	90865	hgsc.bcm.edu	37	9	6254467	6254467	+	Missense_Mutation	SNP	G	G	A	rs148943384		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	89.0	4.0	73.0	0.0	0.0449438	0	G|1.000;A|0.000	0.000	weak	.	IL33	27	.	NM_033439	exon7	c.G526A	p.G176S	GGTGACGGTGTTG	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	37	15	34137131	34137131	+	Silent	SNP	G	G	A	rs118177681	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	102.0	56.0	112.0	0.0	0.54902	0	G|0.993;A|0.007	0.007	strong	.	RYR3	760	.	NM_001036	exon93	c.G13365A	p.E4455E	TGACGAGGAAGAG	.	PASS	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	37	2	218686643	218686643	+	Missense_Mutation	SNP	T	T	A	rs112371945	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	126.0	68.0	95.0	0.0	0.539683	0	T|0.996;A|0.004	0.004	strong	.	TNS1	251	.	NM_022648	exon23	c.A3080T	p.E1027V	ACAGACTCCACAT	.	PASS	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	37	4	186536235	186536235	+	Silent	SNP	G	G	A	rs373495088		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	142.0	71.0	129.0	0.0	0.5	0	.	.	weak	.	SORBS2	300	.	NM_001270771	exon19	c.C3018T	p.H1006H	TCTCCCGTGGTGT	.	PASS	Atlas-SNP
AFAP1L2	84632	hgsc.bcm.edu	37	10	116064528	116064528	+	Missense_Mutation	SNP	G	G	A	rs73365341	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	24.0	14.0	36.0	0.0	0.583333	0	G|0.884;A|0.116	0.116	strong	.	AFAP1L2	90	.	NM_032550	exon11	c.C1234T	p.L412F	AGTAGAGGTGGTC	.	PASS	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	37	10	24833407	24833407	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	3.0	48.0	0.0	0.0461538	0	.	.	none	KIAA1217,colon,carcinoma,+1,1	KIAA1217	235	1	NM_019590	exon19	c.T5208C	p.R1736R	TTCACGTAAGGTA	.	scavenged	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	37	2	240036848	240036848	+	Silent	SNP	C	C	T	rs114495208	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	125.0	60.0	89.0	0.0	0.48	0	C|0.996;T|0.004	0.004	strong	.	HDAC4	127	.	NM_006037	exon13	c.G1677A	p.K559K	CTCCTGCTTCACC	.	PASS	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	37	1	202715288	202715288	+	Missense_Mutation	SNP	G	G	A	rs144876400	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	130.0	52.0	108.0	0.0	0.4	0	G|1.000;A|0.000	0.000	weak	.	KDM5B	166	.	NM_006618	exon15	c.C2180T	p.P727L	TTGTAAGGAGGAC	.	PASS	Atlas-SNP
PCDHB13	56123	hgsc.bcm.edu	37	5	140595831	140595831	+	Silent	SNP	G	G	T	rs145378952	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	95.0	49.0	67.0	0.0	0.515789	0	G|1.000;T|0.000	0.000	strong	.	PCDHB13	142	.	NM_018933	exon1	c.G2136T	p.R712R	GGTGCGGCTGTGT	.	PASS	Atlas-SNP
ANO7	50636	hgsc.bcm.edu	37	2	242144308	242144308	+	Silent	SNP	G	G	A	rs139761441	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	71.0	37.0	64.0	0.0	0.521127	0	G|0.998;A|0.002	0.002	strong	.	ANO7	136	.	NM_001001891	exon10	c.G1080A	p.A360A	GCCAGCGGCAGTG	.	PASS	Atlas-SNP
TAS1R3	83756	hgsc.bcm.edu	37	1	1268462	1268462	+	Silent	SNP	G	G	A	rs138915131	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	88.0	43.0	74.0	0.0	0.488636	0	G|0.994;A|0.006	0.006	strong	.	TAS1R3	39	.	NM_152228	exon4	c.G1437A	p.R479R	CCTCAGGACAGAG	.	PASS	Atlas-SNP
FBXO42	54455	hgsc.bcm.edu	37	1	16641797	16641797	+	Silent	SNP	C	C	T	rs61753288	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	246.0	110.0	219.0	0.0	0.447154	0	C|0.993;T|0.007	0.007	strong	.	FBXO42	53	.	NM_018994	exon2	c.G117A	p.E39E	AGTCTCCTCAGCC	.	PASS	Atlas-SNP
PRPF18	8559	hgsc.bcm.edu	37	10	13639490	13639490	+	Silent	SNP	C	C	T	rs2502213	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	22.0	40.0	0.0	0.511628	0	C|0.972;T|0.028	0.028	strong	.	PRPF18	32	.	NM_003675	exon2	c.C99T	p.L33L	TGAGCTCGCCAAA	.	PASS	Atlas-SNP
DENND1B	163486	hgsc.bcm.edu	37	1	197482049	197482049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	124.0	90.0	108.0	0.0	0.725806	0	.	.	none	.	DENND1B	108	.	NM_001195215	exon21	c.G1550T	p.G517V	AGAGCACCATCAA	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82817843	82817843	+	Missense_Mutation	SNP	C	C	G	rs374590975		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	153.0	68.0	159.0	0.0	0.444444	0	.	.	weak	.	VCAN	498	.	NM_004385	exon7	c.C3718G	p.P1240A	AGGGAACCTGGTG	.	PASS	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	37	4	52862020	52862020	+	Missense_Mutation	SNP	C	C	G	rs202189181	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	128.0	69.0	103.0	0.0	0.539062	0	.	.	weak	.	LRRC66	128	.	NM_001024611	exon4	c.G1168C	p.A390P	TGAAGGCGACAAG	.	PASS	Atlas-SNP
UROS	7390	hgsc.bcm.edu	37	10	127484721	127484721	+	Missense_Mutation	SNP	A	A	G	rs17173752	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	131.0	62.0	145.0	0.0	0.473282	0	A|0.994;C|0.006	.	alt	.	UROS	20	.	NM_000375	exon8	c.T512C	p.V171A	TGTGCAACTGTCT	.	PASS	Atlas-SNP
TMEM132A	54972	hgsc.bcm.edu	37	11	60701176	60701176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	51.0	21.0	44.0	0.0	0.411765	0	.	.	none	.	TMEM132A	135	.	NM_017870	exon8	c.G1522A	p.E508K	ACCCTCGAGCAGG	.	PASS	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	37	12	122361711	122361711	+	Missense_Mutation	SNP	C	C	T	rs34703321	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	36.0	62.0	0.0	0.48	0	C|0.995;T|0.005	0.005	strong	.	WDR66	143	.	NM_001178003	exon3	c.C562T	p.R188W	ACCGACCGGATGC	.	PASS	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	37	X	53407996	53407996	+	Silent	SNP	G	G	A	rs142611198	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	106.0	103.0	75.0	0.0	0.971698	0	G|0.999;A|0.001	0.001	strong	.	SMC1A	112	.	NM_006306	exon23	c.C3450T	p.A1150A	GAAGGGGGCTGGC	.	PASS	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	37	15	93557954	93557954	+	Missense_Mutation	SNP	G	G	C	rs56227200	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	105.0	43.0	79.0	0.0	0.409524	0	G|0.981;C|0.019	0.019	strong	.	CHD2	280	.	NM_001271	exon37	c.G4721C	p.G1574A	TGACTGGGGGTAA	.	PASS	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207174559	207174559	+	Silent	SNP	A	A	G	rs13408088	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	114.0	54.0	109.0	0.0	0.473684	0	A|0.970;G|0.030	0.030	strong	.	ZDBF2	531	.	NM_020923	exon5	c.A5307G	p.K1769K	TAAGAAAAGACAC	.	PASS	Atlas-SNP
GPR144	347088	hgsc.bcm.edu	37	9	127216378	127216378	+	Splice_Site	SNP	T	T	C	rs118108631	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	69.0	36.0	58.0	1.0	0.521739	0.0172414	T|0.993;C|0.007	0.007	strong	GPR144,NS,carcinoma,0,1	GPR144	33	1	NM_001161808	exon5	c.1078+2T>C	.	GACAGGTGCGCCC	.	scavenged	Atlas-SNP
PSD4	23550	hgsc.bcm.edu	37	2	113953346	113953346	+	Missense_Mutation	SNP	G	G	A	rs370284646		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	11.0	74.0	0.0	0.192982	0	.	.	weak	.	PSD4	74	.	NM_012455	exon11	c.G2224A	p.V742M	TGGGCCGTGTGAG	.	PASS	Atlas-SNP
NUP107	57122	hgsc.bcm.edu	37	12	69113184	69113184	+	Silent	SNP	C	C	T	rs35209116	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	144.0	77.0	146.0	0.0	0.534722	0	C|0.996;T|0.004	0.004	strong	.	NUP107	88	.	NM_020401	exon13	c.C1147T	p.L383L	TGGAAACTGTACC	.	PASS	Atlas-SNP
TYR	7299	hgsc.bcm.edu	37	11	88911575	88911575	+	Missense_Mutation	SNP	C	C	T	rs145513733	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	38.0	61.0	0.0	0.506667	0	C|0.999;T|0.001	0.001	strong	.	TYR	130	.	NM_000372	exon1	c.C454T	p.P152S	GTCATCCCCATAG	.	PASS	Atlas-SNP
BTBD16	118663	hgsc.bcm.edu	37	10	124096014	124096014	+	Missense_Mutation	SNP	A	A	G	rs150944464	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	63.0	17.0	76.0	0.0	0.269841	0	A|0.990;G|0.010	0.010	strong	.	BTBD16	44	.	NM_144587	exon15	c.A1269G	p.I423M	GAGAATAAAGCAC	.	PASS	Atlas-SNP
RRN3	54700	hgsc.bcm.edu	37	16	15188018	15188018	+	Missense_Mutation	SNP	C	C	T	rs141593500	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	120.0	60.0	124.0	0.0	0.5	0	C|1.000;T|0.000	0.000	weak	.	RRN3	36	.	NM_018427	exon1	c.G73A	p.G25S	ACGCGCCCAGCTT	.	PASS	Atlas-SNP
PTX4	390667	hgsc.bcm.edu	37	16	1537956	1537956	+	Missense_Mutation	SNP	C	C	G	rs144904207	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	25.0	43.0	0.0	0.520833	0	C|0.998;G|0.002	0.002	strong	.	PTX4	46	.	NM_001013658	exon2	c.G142C	p.E48Q	TCACCTCCTGGAA	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228476420	228476420	+	Silent	SNP	C	C	T	rs56367754	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	113.0	56.0	85.0	0.0	0.495575	0	C|0.995;T|0.005	0.005	strong	OBSCN_ENST00000570156,colon,carcinoma,+1,4	OBSCN	2142	4	NM_001271223	exon43	c.C11457T	p.P3819P	GGCCCCCGTGGAG	.	PASS	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51093049	51093049	+	Silent	SNP	C	C	T	rs1129262	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	138.0	31.0	87.0	0.0	0.224638	0	C|0.993;T|0.007	0.007	strong	COBL,NS,haematopoietic_neoplasm,0,1	COBL	167	1	NM_015198	exon12	c.G3525A	p.E1175E	GAGCTCCTCAGAA	.	PASS	Atlas-SNP
LRPAP1	4043	hgsc.bcm.edu	37	4	3516560	3516560	+	Silent	SNP	G	G	A	rs11549512	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	125.0	61.0	96.0	0.0	0.488	0	G|0.971;A|0.029	0.029	strong	.	LRPAP1	29	.	NM_002337	exon7	c.C930T	p.S310S	GCCCACGCTCTCT	.	PASS	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	37	5	140188356	140188356	+	Silent	SNP	A	A	G	rs144593807	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	63.0	20.0	108.0	0.0	0.31746	0	A|0.976;G|0.024	0.024	strong	PCDHA4_ENST00000530339,NS,carcinoma,+2,8	PCDHA4	419	8	NM_031500	exon1	c.A1584G	p.L528L	GGAGCTAGAGCTG	.	PASS	Atlas-SNP
ALG1	56052	hgsc.bcm.edu	37	16	5123201	5123201	+	Missense_Mutation	SNP	A	A	C	rs113219939	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	220.0	96.0	224.0	0.0	0.436364	0	A|0.984;C|0.016	0.016	strong	.	ALG1	35	.	NM_019109	exon3	c.A334C	p.M112L	CAGGCTATGTACT	.	PASS	Atlas-SNP
PPP1R18	170954	hgsc.bcm.edu	37	6	30647035	30647035	+	Missense_Mutation	SNP	G	G	T	rs115169407	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	38.0	17.0	32.0	0.0	0.447368	0	G|0.997;T|0.003	0.003	strong	KIAA1949,NS,carcinoma,0,1	.	.	1	NM_001134870	exon3	c.C1743A	p.D581E	TTCGTCGTCGGGT	.	PASS	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	37	17	45917703	45917703	+	Silent	SNP	C	C	T	rs11652952	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	116.0	66.0	97.0	0.0	0.568965	0	C|0.963;T|0.037	0.037	strong	.	SCRN2	35	.	NM_138355	exon3	c.G210A	p.T70T	AGCGTGCGTCTTC	.	PASS	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	37	18	5478295	5478295	+	Missense_Mutation	SNP	C	C	A	rs117900256	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	310.0	175.0	199.0	0.0	0.564516	0	C|0.990;A|0.010	0.010	strong	.	EPB41L3	222	.	NM_012307	exon3	c.G326T	p.S109I	TGCATGCTTTTAG	.	PASS	Atlas-SNP
OSBPL8	114882	hgsc.bcm.edu	37	12	76844711	76844711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	118.0	5.0	113.0	0.0	0.0423729	0	.	.	none	.	OSBPL8	86	.	NM_020841	exon4	c.G137A	p.R46H	CCTTGGCGCTGAC	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228401329	228401329	+	Silent	SNP	C	C	T	rs185717159	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	114.0	64.0	100.0	0.0	0.561404	0	C|0.994;T|0.006	0.006	strong	.	OBSCN	2142	.	NM_001271223	exon3	c.C1176T	p.R392R	CGTGCGCAATGTC	.	PASS	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	37	5	16676247	16676247	+	Missense_Mutation	SNP	G	G	A	rs61744227	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	82.0	37.0	117.0	0.0	0.451219	0	G|0.994;A|0.006	0.006	strong	.	MYO10	198	.	NM_012334	exon34	c.C4559T	p.S1520L	ACATCCGAGTTCA	.	PASS	Atlas-SNP
GPR52	9293	hgsc.bcm.edu	37	1	174417941	174417941	+	Missense_Mutation	SNP	G	G	A	rs200286780	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	122.0	49.0	99.0	0.0	0.401639	0	.	.	weak	.	GPR52	40	.	NM_005684	exon1	c.G692A	p.R231H	TTTGCCGTCAGCA	.	PASS	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	37	17	7701922	7701922	+	Silent	SNP	G	G	A	rs146210717	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	61.0	33.0	48.0	0.0	0.540984	0	G|0.999;A|0.001	0.001	strong	.	DNAH2	498	.	NM_020877	exon54	c.G8445A	p.T2815T	GACCACGTCCTTC	.	PASS	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	37	3	97868656	97868656	+	Missense_Mutation	SNP	C	C	T	rs146577101	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	529.0	72.0	357.0	0.0	0.136106	0	C|0.936;T|0.064	0.064	strong	.	OR5H14	56	.	NM_001005514	exon1	c.C427T	p.R143W	TGCATCCGGCTAT	.	PASS	Atlas-SNP
PDIA3	2923	hgsc.bcm.edu	37	15	44038850	44038850	+	Missense_Mutation	SNP	G	G	T	rs61734331	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	29.0	59.0	0.0	0.508772	0	G|0.999;T|0.001	0.001	strong	.	PDIA3	40	.	NM_005313	exon1	c.G113T	p.R38L	AGAGTCGCATCTC	.	PASS	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99150237	99150237	+	Silent	SNP	G	G	A	rs41300219	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	31.0	18.0	20.0	0.0	0.580645	0	G|0.949;A|0.051	0.051	strong	.	RRP12	97	.	NM_015179	exon6	c.C696T	p.P232P	GGTCACGGGGTAG	.	PASS	Atlas-SNP
RAPH1	65059	hgsc.bcm.edu	37	2	204306093	204306093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	61.0	43.0	0.0	0.663043	0	.	.	none	.	RAPH1	118	.	NM_213589	exon14	c.C1820T	p.P607L	AAAGGGGGCACAA	.	PASS	Atlas-SNP
TMEM37	140738	hgsc.bcm.edu	37	2	120194682	120194682	+	Missense_Mutation	SNP	A	A	C	rs200510439	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	40.0	15.0	48.0	0.0	0.375	0	.	.	weak	.	TMEM37	40	.	NM_183240	exon2	c.A239C	p.H80P	AGGCCCATGTGCC	.	PASS	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	37	4	163032498	163032498	+	Missense_Mutation	SNP	C	C	G	rs140747357	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	41.0	101.0	0.0	0.506173	0	C|0.996;G|0.004	0.004	strong	.	FSTL5	207	.	NM_001128428	exon2	c.G51C	p.E17D	TTCCGACTCCAGA	.	PASS	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	37	17	73751175	73751175	+	Missense_Mutation	SNP	C	C	T	rs140501692	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	22.0	50.0	0.0	0.511628	0	C|1.000;T|0.000	0.000	weak	ITGB4_ENST00000339591,colon,carcinoma,+1,1	ITGB4	165	1	NM_001005619	exon33	c.C4388T	p.P1463L	GGCTTCCGCTGTC	.	PASS	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	37	7	34091570	34091570	+	Silent	SNP	T	T	G	rs117988035	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	156.0	43.0	97.0	0.0	0.275641	0	T|0.990;G|0.010	0.010	strong	.	BMPER	131	.	NM_133468	exon9	c.T774G	p.A258A	CACAGCTTGTACC	.	PASS	Atlas-SNP
SYNGR1	9145	hgsc.bcm.edu	37	22	39777880	39777880	+	Silent	SNP	C	C	T	rs74681509	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	34.0	96.0	0.0	0.377778	0	C|1.000;T|0.000	0.000	strong	SYNGR1,colon,carcinoma,0,1	SYNGR1	19	1	NM_004711	exon4	c.C663T	p.F221F	CACCTTCGACACC	.	PASS	Atlas-SNP
POTEH	23784	hgsc.bcm.edu	37	22	16287538	16287538	+	Silent	SNP	G	G	A	rs200179046	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	270.0	22.0	128.0	1.0	0.0814815	0.0078125	A|0.008;C|0.006;G|0.986	0.008	strong	POTEH,colon,carcinoma,0,1	POTEH	114	1	NM_001136213	exon1	c.C348T	p.N116N	GCCCACGTTGCTC	.	scavenged	Atlas-SNP
PIGL	9487	hgsc.bcm.edu	37	17	16203290	16203290	+	Missense_Mutation	SNP	C	C	A	rs115958467	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	40.0	58.0	0.0	0.547945	0	C|0.996;A|0.004	0.004	strong	.	PIGL	16	.	NM_004278	exon3	c.C424A	p.L142M	ATCAATCTGGTAA	.	PASS	Atlas-SNP
WSCD1	23302	hgsc.bcm.edu	37	17	6012955	6012955	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	63.0	19.0	65.0	0.0	0.301587	0	.	.	none	.	WSCD1	84	.	NM_015253	exon6	c.G878A	p.W293X	GGGGCTGGGAATG	.	PASS	Atlas-SNP
SAFB2	9667	hgsc.bcm.edu	37	19	5590291	5590291	+	Silent	SNP	G	G	T	rs117896034	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	60.0	28.0	71.0	0.0	0.466667	0	G|0.984;T|0.016	0.016	strong	.	SAFB2	90	.	NM_014649	exon18	c.C2523A	p.P841P	TAACCTGGGGGGA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179611847	179611847	+	Silent	SNP	T	T	G	rs141105907	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	148.0	35.0	132.0	0.0	0.236486	0	T|0.998;G|0.002	0.002	strong	.	TTN	18412	.	NM_133379	exon46	c.A15280C	p.R5094R	AGTATCTCTCCAG	.	PASS	Atlas-SNP
MAPK8IP3	23162	hgsc.bcm.edu	37	16	1817855	1817855	+	Silent	SNP	C	C	T	rs118038816	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	47.0	65.0	0.0	0.559524	0	C|0.995;T|0.005	0.005	strong	.	MAPK8IP3	164	.	NM_015133	exon28	c.C3456T	p.V1152V	GCTTGTCGCGGGC	.	PASS	Atlas-SNP
SLC23A2	9962	hgsc.bcm.edu	37	20	4855309	4855309	+	Silent	SNP	G	G	A	rs41282100	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	60.0	29.0	79.0	0.0	0.483333	0	G|0.990;A|0.010	0.010	strong	.	SLC23A2	62	.	NM_203327	exon10	c.C858T	p.Y286Y	TCTGGCGTATTGA	.	PASS	Atlas-SNP
SDCBP2	27111	hgsc.bcm.edu	37	20	1301053	1301053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	89.0	22.0	85.0	0.0	0.247191	0	.	.	none	.	SDCBP2	78	.	NM_080489	exon2	c.C8T	p.S3F	TACAGGGATGACA	.	PASS	Atlas-SNP
MYO19	80179	hgsc.bcm.edu	37	17	34854121	34854121	+	Missense_Mutation	SNP	C	C	T	rs139565052	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	28.0	10.0	20.0	0.0	0.357143	0	C|0.999;T|0.001	0.001	strong	.	MYO19	130	.	NM_001163735	exon26	c.G2746A	p.A916T	GCAGCGCTCGGAT	.	PASS	Atlas-SNP
SEMA3G	56920	hgsc.bcm.edu	37	3	52476899	52476899	+	Missense_Mutation	SNP	G	G	A	rs138988057	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	94.0	57.0	67.0	0.0	0.606383	0	G|0.998;A|0.002	0.002	strong	.	SEMA3G	58	.	NM_020163	exon2	c.C140T	p.A47V	AAGATGGCAGAGC	.	PASS	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	37	X	25014016	25014016	+	Silent	SNP	C	C	T	rs11573531	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	139.0	139.0	150.0	0.0	1	0	C|0.990;T|0.010	0.010	strong	.	POLA1	117	.	NM_016937	exon37	c.C4338T	p.Y1446Y	TGGCTACTCCGAA	.	PASS	Atlas-SNP
KIAA0319L	79932	hgsc.bcm.edu	37	1	35944609	35944609	+	Missense_Mutation	SNP	T	T	C	rs34372241	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	46.0	21.0	46.0	0.0	0.456522	0	T|0.994;C|0.006	0.006	strong	.	KIAA0319L	156	.	NM_024874	exon4	c.A871G	p.T291A	GGGGGGTAGGGGT	.	PASS	Atlas-SNP
VPS18	57617	hgsc.bcm.edu	37	15	41192540	41192540	+	Silent	SNP	C	C	T	rs79536497	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	23.0	61.0	0.0	0.425926	0	C|0.996;T|0.004	0.004	strong	.	VPS18	67	.	NM_020857	exon4	c.C1524T	p.G508G	GCAGGGCGACCCA	.	PASS	Atlas-SNP
DHRS4	10901	hgsc.bcm.edu	37	14	24435542	24435542	+	Missense_Mutation	SNP	G	G	T	rs11556285	bycluster;byhapmap	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	751.0	38.0	685.0	0.0	0.0505992	0	G|0.998;T|0.002	0.002	weak	.	DHRS4	22	.	NM_021004	exon6	c.G582T	p.K194N	GACCAAGACCCTG	.	PASS	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	37	1	200558420	200558420	+	Silent	SNP	C	C	T	rs77213709	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	303.0	175.0	216.0	0.0	0.577558	0	C|0.996;T|0.004	0.004	strong	.	KIF14	156	.	NM_014875	exon18	c.G3039A	p.K1013K	CTTTGCCTTTTCT	.	PASS	Atlas-SNP
ST5	6764	hgsc.bcm.edu	37	11	8724191	8724191	+	Missense_Mutation	SNP	A	A	G	rs113126215	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	17.0	37.0	0.0	0.485714	0	A|0.996;G|0.004	0.004	strong	.	ST5	85	.	NM_005418	exon17	c.T2648C	p.V883A	TGGCGCACACTGA	.	PASS	Atlas-SNP
ARAP1	116985	hgsc.bcm.edu	37	11	72421569	72421569	+	Missense_Mutation	SNP	C	C	T	rs369752678		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	22.0	57.0	0.0	0.458333	0	.	.	weak	.	ARAP1	168	.	NM_001040118	exon10	c.G1277A	p.R426Q	GAGAGCCGGGCCC	.	PASS	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33359950	33359950	+	Missense_Mutation	SNP	C	C	G	rs141655944	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	43.0	109.0	0.0	0.511905	0	C|0.993;G|0.007	0.007	strong	.	FMN1	174	.	NM_001103184	exon1	c.G136C	p.E46Q	CAGATTCTAATTT	.	PASS	Atlas-SNP
LZTR1	8216	hgsc.bcm.edu	37	22	21347142	21347142	+	Silent	SNP	C	C	T	rs145833752	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	116.0	64.0	93.0	0.0	0.551724	0	C|0.994;T|0.006	0.006	strong	.	LZTR1	99	.	NM_006767	exon11	c.C1209T	p.F403F	CATCTTCGGGGGC	.	PASS	Atlas-SNP
LRWD1	222229	hgsc.bcm.edu	37	7	102112914	102112914	+	Silent	SNP	C	C	T	rs184787600	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	23.0	10.0	22.0	0.0	0.434783	0	C|0.995;T|0.005	0.005	strong	LRWD1,colon,carcinoma,0,1	LRWD1	41	1	NM_152892	exon13	c.C1548T	p.S516S	GGGGAGCGGCCTG	.	PASS	Atlas-SNP
MLPH	79083	hgsc.bcm.edu	37	2	238434245	238434245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	104.0	51.0	74.0	0.0	0.490385	0	.	.	none	.	MLPH	41	.	NM_001042467	exon7	c.C677G	p.S226C	CTTAGTCCCTCAC	.	PASS	Atlas-SNP
CPN1	1369	hgsc.bcm.edu	37	10	101823428	101823428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	47.0	92.0	0.0	0.559524	0	.	.	none	.	CPN1	62	.	NM_001308	exon5	c.G814A	p.G272R	AATCTCCGCAGTT	.	PASS	Atlas-SNP
CRELD2	79174	hgsc.bcm.edu	37	22	50315382	50315382	+	Missense_Mutation	SNP	C	C	G	rs74510325	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	96.0	45.0	71.0	0.0	0.46875	0	C|0.978;G|0.022	0.022	strong	.	CRELD2	57	.	NM_024324	exon5	c.C565G	p.R189G	TCGCTCCGGAACG	.	PASS	Atlas-SNP
RSL1D1	26156	hgsc.bcm.edu	37	16	11935639	11935639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	44.0	74.0	0.0	0.478261	0	.	.	none	.	RSL1D1	40	.	NM_015659	exon7	c.G768T	p.E256D	CGATTTCTCAGTT	.	PASS	Atlas-SNP
HLA-DQB2	3120	hgsc.bcm.edu	37	6	32729618	32729618	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	89.0	39.0	86.0	0.0	0.438202	0	.	.	none	.	HLA-DQB2	22	.	NM_001198858	exon2	c.C183T	p.N61N	CTCGCGGTTATAG	.	PASS	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	37	12	998378	998378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	112.0	54.0	108.0	0.0	0.482143	0	.	.	none	.	WNK1	403	.	NM_001184985	exon21	c.T6217A	p.S2073T	GTGACTTCTGCGG	.	PASS	Atlas-SNP
DSG1	1828	hgsc.bcm.edu	37	18	28934274	28934274	+	Silent	SNP	C	C	T	rs146192657	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	135.0	87.0	112.0	0.0	0.644444	0	C|0.994;T|0.006	0.006	strong	.	DSG1	176	.	NM_001942	exon15	c.C2115T	p.Y705Y	TGCTTACGCAGAT	.	PASS	Atlas-SNP
SLC25A45	283130	hgsc.bcm.edu	37	11	65144331	65144331	+	Missense_Mutation	SNP	C	C	T	rs371949191		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	211.0	89.0	203.0	0.0	0.421801	0	.	.	weak	.	SLC25A45	23	.	NM_182556	exon6	c.G556A	p.E186K	GCCCTTCATAGGT	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113349030	113349030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	60.0	10.0	61.0	0.0	0.166667	0	.	.	none	.	CSMD3	2325	.	NM_198123	exon44	c.G6870T	p.M2290I	GCCATTCATTGCA	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228554725	228554725	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	106.0	46.0	105.0	0.0	0.433962	0	.	.	none	.	OBSCN	2142	.	NM_001271223	exon97	c.T22348G	p.L7450V	AAGATCTTGTGCG	.	PASS	Atlas-SNP
ABL1	25	hgsc.bcm.edu	37	9	133755528	133755528	+	Silent	SNP	A	A	G	rs2227985	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	66.0	29.0	79.0	0.0	0.439394	0	A|0.898;G|0.102	0.102	strong	.	ABL1	1632	.	NM_007313	exon9	c.A1554G	p.E518E	CCAGGAATCCAGT	.	PASS	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36223699	36223699	+	Silent	SNP	G	G	T	rs375564425	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	80.0	41.0	41.0	0.0	0.5125	0	.	.	weak	.	MLL4	229	.	NM_014727	exon28	c.G6249T	p.T2083T	GGGCACGCCTCCT	.	PASS	Atlas-SNP
CBFA2T3	863	hgsc.bcm.edu	37	16	88951466	88951466	+	Missense_Mutation	SNP	G	G	A	rs143614023	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	27.0	13.0	10.0	0.0	0.481481	0	G|1.000;A|0.000	0.000	strong	.	CBFA2T3	47	.	NM_005187	exon7	c.C1105T	p.H369Y	GCCGATGGCGCTC	.	PASS	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	37	7	70800578	70800578	+	Missense_Mutation	SNP	G	G	T	rs145721199	bycluster;byfrequency;alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	37.0	2.0	29.0	0.0	0.0540541	0	G|0.999;A|0.001	.	alt	WBSCR17,mouth,carcinoma,+1,1	WBSCR17	208	1	NM_022479	exon2	c.G281T	p.R94L	GTGGGCGGGGTAA	.	scavenged	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	37	5	33576803	33576803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	49.0	83.0	0.0	0.441441	0	.	.	none	.	ADAMTS12	464	.	NM_030955	exon19	c.G3328A	p.D1110N	CAGTATCTGAACT	.	PASS	Atlas-SNP
HPS1	3257	hgsc.bcm.edu	37	10	100185638	100185638	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	108.0	59.0	112.0	0.0	0.546296	0	.	.	none	.	HPS1	65	.	NM_000195	exon12	c.A1092G	p.L364L	GGGCACTAGGGGG	.	PASS	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	37	17	7796805	7796805	+	Silent	SNP	C	C	G	rs199898244	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	105.0	46.0	130.0	0.0	0.438095	0	C|0.999;G|0.001	0.001	strong	.	CHD3	169	.	NM_001005271	exon5	c.C888G	p.S296S	ACCCTCCGGACCC	.	PASS	Atlas-SNP
HSD17B1	3292	hgsc.bcm.edu	37	17	40706596	40706596	+	Missense_Mutation	SNP	C	C	T	rs147402365	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	28.0	24.0	0.0	0.651163	0	C|0.996;T|0.004	0.004	strong	.	HSD17B1	24	.	NM_000413	exon5	c.C713T	p.A238V	AGGTGGCGGAGGT	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84607492	84607492	+	Missense_Mutation	SNP	C	C	T	rs190878253	by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	272.0	62.0	227.0	0.0	0.227941	0	C|0.999;T|0.001	0.001	strong	.	.	.	.	NM_001001670	exon4	c.C2107T	p.P703S	GGCCTGCCCCGCA	.	PASS	Atlas-SNP
CBL	867	hgsc.bcm.edu	37	11	119168130	119168130	+	Silent	SNP	G	G	C	rs143840974	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	39.0	95.0	0.0	0.464286	0	G|0.997;C|0.003	0.003	strong	CBL,NS,haematopoietic_neoplasm,0,1	CBL	408	1	NM_005188	exon14	c.G2190C	p.T730T	CTGTACGTATGAA	.	PASS	Atlas-SNP
TCEA3	6920	hgsc.bcm.edu	37	1	23743859	23743859	+	Missense_Mutation	SNP	T	T	C	rs192746462	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	143.0	71.0	131.0	0.0	0.496504	0	T|0.998;C|0.002	0.002	strong	.	TCEA3	20	.	NM_003196	exon4	c.A263G	p.E88G	CCTTTTTCTCCTT	.	PASS	Atlas-SNP
ARFGEF1	10565	hgsc.bcm.edu	37	8	68130065	68130065	+	Missense_Mutation	SNP	T	T	C	rs200528352		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	133.0	65.0	114.0	0.0	0.488722	0	.	.	weak	.	ARFGEF1	196	.	NM_006421	exon32	c.A4565G	p.K1522R	CAAGTTTTATCCC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230399	23230399	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	108.0	35.0	124.0	0.0	0.324074	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.G166C	p.V56L	GCCTCAGTTGGAA	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2421857	2421857	+	Silent	SNP	C	C	T	rs72971482	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	38.0	64.0	0.0	0.469136	0	C|0.993;T|0.007	0.007	strong	.	TMPRSS9	79	.	NM_182973	exon13	c.C2058T	p.D686D	GGGTGACTCTGGG	.	PASS	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	37	9	5050706	5050706	+	Silent	SNP	C	C	T	rs2230722	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	34.0	64.0	0.0	0.53125	0	C|0.647;T|0.353	0.353	strong	.	JAK2	35466	.	NM_004972	exon6	c.C489T	p.H163H	TGTGCACGGATGG	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240256668	240256668	+	Missense_Mutation	SNP	A	A	C	rs146681532	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	122.0	55.0	108.0	0.0	0.45082	0	A|0.997;C|0.003	0.003	strong	.	FMN2	451	.	NM_020066	exon1	c.A1259C	p.K420T	ACATCAAGACCAC	.	PASS	Atlas-SNP
CCDC152	100129792	hgsc.bcm.edu	37	5	42759295	42759295	+	Silent	SNP	C	C	T	rs200364347	byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	136.0	65.0	160.0	0.0	0.477941	0	C|0.995;T|0.005	0.005	strong	CCDC152,NS,carcinoma,0,1	CCDC152	10	1	NM_001134848	exon2	c.C72T	p.F24F	TGACTTCTCACAG	.	PASS	Atlas-SNP
LDHA	3939	hgsc.bcm.edu	37	11	18427072	18427072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	4.0	71.0	0.0	0.043956	0	.	.	none	.	LDHA	118	.	NM_001165414	exon7	c.A874G	p.I292V	GAGAGTATAATGA	.	PASS	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	37	14	24534270	24534270	+	Missense_Mutation	SNP	C	C	T	rs117833529	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	41.0	19.0	21.0	0.0	0.463415	0	C|0.976;T|0.024	0.024	strong	.	LRRC16B	120	.	NM_138360	exon33	c.C3184T	p.R1062W	CGGCCCCGGAGCT	.	PASS	Atlas-SNP
NID2	22795	hgsc.bcm.edu	37	14	52509063	52509063	+	Missense_Mutation	SNP	G	G	A	rs17831525	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	46.0	27.0	64.0	0.0	0.586957	0	G|0.978;A|0.022	0.022	strong	.	NID2	201	.	NM_007361	exon7	c.C1585T	p.P529S	GGTGAGGTGCCCC	.	PASS	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	37	9	32542793	32542793	+	Missense_Mutation	SNP	G	G	T	rs79708790	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	168.0	77.0	137.0	0.0	0.458333	0	G|0.998;T|0.002	0.002	strong	.	TOPORS	127	.	NM_005802	exon3	c.C1730A	p.S577Y	CTTACAGATGAGT	.	PASS	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	37	2	11750985	11750985	+	Silent	SNP	C	C	T	rs374277928		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	46.0	60.0	0.0	0.582278	0	.	.	weak	.	GREB1	308	.	NM_014668	exon18	c.C2838T	p.H946H	CGGCCACGGGCTC	.	PASS	Atlas-SNP
SLC14A2	8170	hgsc.bcm.edu	37	18	43204739	43204739	+	Missense_Mutation	SNP	C	C	T	rs34461862	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	82.0	46.0	57.0	0.0	0.560976	0	C|0.973;T|0.027	0.027	strong	.	SLC14A2	121	.	NM_001242692	exon3	c.C110T	p.T37I	CGGATACTCACCC	.	PASS	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	37	21	47664746	47664746	+	Silent	SNP	C	C	A	rs17183255	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	20.0	46.0	0.0	0.37037	0	C|0.997;T|0.003	.	alt	.	MCM3AP	146	.	NM_003906	exon23	c.G5013T	p.P1671P	CATCTGCGGAAGC	.	PASS	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108339209	108339209	+	Missense_Mutation	SNP	T	T	C	rs187136160	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	33.0	16.0	62.0	0.0	0.484848	0	T|0.999;C|0.001	0.001	strong	SORCS1_ENST00000344440,NS,carcinoma,+2,4	SORCS1	534	4	NM_001206572	exon25	c.A3289G	p.T1097A	TGTGGGTTGGAGT	.	PASS	Atlas-SNP
TRMT2A	27037	hgsc.bcm.edu	37	22	20103264	20103264	+	Silent	SNP	C	C	T	rs9605068	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	203.0	98.0	191.0	0.0	0.482759	0	C|0.978;T|0.022	0.022	strong	.	TRMT2A	34	.	NM_001257994	exon3	c.G639A	p.L213L	CTCGAGCAGCCAG	.	PASS	Atlas-SNP
ALK	238	hgsc.bcm.edu	37	2	29416366	29416366	+	Missense_Mutation	SNP	G	G	C	rs1881421	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	269.0	127.0	271.0	1.0	0.472119	0.00369004	G|0.518;C|0.482	0.482	strong	.	ALK	533	.	NM_004304	exon29	c.C4587G	p.D1529E	ACCCCTGTCGTGT	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	37	11	5364476	5364476	+	Silent	SNP	C	C	T	rs61738485	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	25.0	9.0	32.0	0.0	0.36	0	C|0.885;T|0.115	0.115	strong	OR51B5,NS,carcinoma,-1,1	OR51B5	60	1	NM_001005567	exon5	c.G279A	p.A93A	GCAGGCCGCACTT	.	PASS	Atlas-SNP
SLC1A5	6510	hgsc.bcm.edu	37	19	47280587	47280587	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	34.0	80.0	0.0	0.377778	0	.	.	none	.	SLC1A5	31	.	NM_005628	exon6	c.C1134T	p.I378I	GGGCAGGATGAAA	.	PASS	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	37	2	196922836	196922836	+	Missense_Mutation	SNP	T	T	A	rs72917299	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	94.0	47.0	110.0	0.0	0.5	0	T|0.991;A|0.009	0.009	strong	.	DNAH7	512	.	NM_018897	exon2	c.A20T	p.K7I	GCCGATTTATCCT	.	PASS	Atlas-SNP
KLHL35	283212	hgsc.bcm.edu	37	11	75134832	75134832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	4.0	82.0	0.0	0.0493827	0	.	.	none	.	KLHL35	15	.	NM_001039548	exon5	c.C1467A	p.D489E	GATGGTGTCCTCA	.	PASS	Atlas-SNP
SGK223	0	hgsc.bcm.edu	37	8	8234526	8234526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	30.0	80.0	0.0	0.32967	0	.	.	none	.	.	.	.	NM_001080826	exon2	c.A1393T	p.T465S	GGGGAGTTGGGTC	.	PASS	Atlas-SNP
OR9K2	441639	hgsc.bcm.edu	37	12	55523833	55523833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	53.0	25.0	65.0	0.0	0.471698	0	.	.	none	.	OR9K2	63	.	NM_001005243	exon1	c.T281C	p.I94T	CCTTCATTGATCT	.	PASS	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	37	12	120593190	120593190	+	Missense_Mutation	SNP	G	G	A	rs183298599	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	36.0	36.0	41.0	0.0	1	0	G|0.998;A|0.002	0.002	strong	GCN1L1,NS,lymphoid_neoplasm,0,1	GCN1L1	207	1	NM_006836	exon30	c.C3485T	p.S1162F	AGCAAGGAGCAGA	.	PASS	Atlas-SNP
COL21A1	81578	hgsc.bcm.edu	37	6	55925801	55925801	+	Missense_Mutation	SNP	G	G	T	rs9464337	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	110.0	50.0	93.0	0.0	0.454545	0	G|0.960;T|0.040	0.040	strong	.	COL21A1	201	.	NM_030820	exon26	c.C2240A	p.A747D	CCAATGGCACCTC	.	PASS	Atlas-SNP
LSS	4047	hgsc.bcm.edu	37	21	47642626	47642626	+	Missense_Mutation	SNP	G	G	A	rs139003098	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	24.0	56.0	0.0	0.533333	0	G|0.998;A|0.002	0.002	strong	.	LSS	50	.	NM_001145436	exon4	c.C346T	p.R116C	GGATGCGTGCCAC	.	PASS	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	37	22	50217387	50217387	+	Silent	SNP	G	G	A	rs11912787	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	42.0	94.0	0.0	0.451613	0	G|0.899;A|0.101	0.101	strong	.	BRD1	144	.	NM_014577	exon1	c.C579T	p.F193F	CTTCTCGAAGCGG	.	PASS	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	37	12	1137145	1137145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	34.0	12.0	41.0	0.0	0.352941	0	.	.	none	.	ERC1	95	.	NM_178039	exon2	c.C76T	p.R26C	CTTCCACGTTCCC	.	PASS	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	37	3	183273248	183273248	+	Missense_Mutation	SNP	A	A	G	rs148924291		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	228.0	96.0	190.0	2.0	0.421053	0.0105263	A|1.000;G|0.000	0.000	weak	KLHL6,NS,lymphoid_neoplasm,-1,2	KLHL6	100	2	NM_130446	exon1	c.T194C	p.L65P	ATTCGCAGGGTTT	.	scavenged	Atlas-SNP
MORC1	27136	hgsc.bcm.edu	37	3	108723983	108723983	+	Missense_Mutation	SNP	C	C	T	rs35421732	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	18.0	58.0	0.0	0.227848	0	C|0.965;T|0.035	0.035	strong	.	MORC1	211	.	NM_014429	exon19	c.G1947A	p.M649I	AGAGTTCATTTTC	.	PASS	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	37	15	75981765	75981765	+	Missense_Mutation	SNP	G	G	T	rs149356457	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	100.0	41.0	69.0	0.0	0.41	0	G|0.998;T|0.002	0.002	strong	.	CSPG4	175	.	NM_001897	exon3	c.C1641A	p.N547K	GACAGGGTTGACC	.	PASS	Atlas-SNP
CTSH	1512	hgsc.bcm.edu	37	15	79224732	79224732	+	Silent	SNP	G	G	A	rs149231812	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	42.0	54.0	0.0	0.56	0	G|0.999;A|0.001	0.001	strong	.	CTSH	23	.	NM_004390	exon6	c.C474T	p.T158T	CTTTCCGGTTGCG	.	PASS	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	37	21	37710067	37710067	+	Missense_Mutation	SNP	G	G	A	rs370616843		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	86.0	38.0	108.0	0.0	0.44186	0	.	.	weak	.	MORC3	78	.	NM_015358	exon4	c.G283A	p.V95I	GGTCATGTCCCAG	.	PASS	Atlas-SNP
GCAT	23464	hgsc.bcm.edu	37	22	38211287	38211287	+	Missense_Mutation	SNP	G	G	A	rs200392738	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	62.0	94.0	0.0	0.681319	0	.	.	weak	.	GCAT	27	.	NM_001171690	exon5	c.G809A	p.R270Q	CAGGACGGTGGGA	.	PASS	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17084581	17084581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	317.0	42.0	270.0	0.0	0.132492	0	.	.	none	.	.	.	.	NM_001271733	exon12	c.A1517G	p.H506R	GGCATATGGCTGG	.	PASS	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	37	2	25991713	25991713	+	Missense_Mutation	SNP	T	T	G	rs190136878	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	54.0	120.0	0.0	0.486486	0	T|0.999;G|0.001	0.001	strong	.	ASXL2	217	.	NM_018263	exon6	c.A529C	p.K177Q	GCTGCTTCTTCTG	.	PASS	Atlas-SNP
CNNM1	26507	hgsc.bcm.edu	37	10	101090246	101090246	+	Missense_Mutation	SNP	G	G	A	rs144944413	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	36.0	45.0	0.0	0.654545	0	G|0.999;A|0.001	0.001	strong	.	CNNM1	101	.	NM_020348	exon1	c.G1102A	p.A368T	ATGGCAGCCGCCT	.	PASS	Atlas-SNP
TMEM63B	55362	hgsc.bcm.edu	37	6	44117619	44117619	+	Silent	SNP	C	C	T	rs75310630	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	107.0	42.0	126.0	0.0	0.392523	0	C|0.999;T|0.001	0.001	strong	.	TMEM63B	77	.	NM_018426	exon16	c.C1437T	p.F479F	GTTCTTCCCCACC	.	PASS	Atlas-SNP
BRF1	2972	hgsc.bcm.edu	37	14	105707747	105707747	+	Silent	SNP	C	C	T	rs144658695	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	22.0	10.0	50.0	0.0	0.454545	0	C|0.997;T|0.003	0.003	strong	.	BRF1	102	.	NM_001519	exon6	c.G549A	p.P183P	CAGGCACGGGTCT	.	PASS	Atlas-SNP
STK36	27148	hgsc.bcm.edu	37	2	219553423	219553423	+	Missense_Mutation	SNP	C	C	G	rs45586733	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	171.0	86.0	148.0	0.0	0.502924	0	C|0.990;G|0.010	0.010	strong	.	STK36	111	.	NM_015690	exon12	c.C1384G	p.L462V	CAGATCCTGAAAG	.	PASS	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	37	1	43909129	43909129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	33.0	93.0	0.0	0.407407	0	.	.	none	SZT2_ENST00000562955,NS,carcinoma,-1,3	SZT2	383	3	NM_015284	exon60	c.C8435T	p.S2812F	AGACCTCTGGACC	.	PASS	Atlas-SNP
ACACB	32	hgsc.bcm.edu	37	12	109665242	109665242	+	Missense_Mutation	SNP	G	G	A	rs60293430	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	38.0	67.0	0.0	0.520548	0	G|0.932;A|0.068	0.068	strong	.	ACACB	330	.	NM_001093	exon27	c.G3949A	p.G1317S	CCGGACGGCACCT	.	PASS	Atlas-SNP
AASDHPPT	60496	hgsc.bcm.edu	37	11	105962172	105962172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	29.0	101.0	0.0	0.318681	0	.	.	none	.	AASDHPPT	40	.	NM_015423	exon4	c.G661A	p.D221N	TTCCTGGATGGAG	.	PASS	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	37	6	43400050	43400050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	24.0	63.0	0.0	0.444444	0	.	.	none	.	ABCC10	118	.	NM_001198934	exon3	c.C332T	p.A111V	CTGTGGCCTGGAT	.	PASS	Atlas-SNP
CNOT6L	246175	hgsc.bcm.edu	37	4	78697538	78697538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	32.0	79.0	0.0	0.405063	0	.	.	none	.	CNOT6L	57	.	NM_144571	exon2	c.G14A	p.G5E	GGCATCCCTATTA	.	PASS	Atlas-SNP
SERPINI2	5276	hgsc.bcm.edu	37	3	167159968	167159968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	36.0	46.0	0.0	0.455696	0	.	.	none	.	SERPINI2	85	.	NM_001012303	exon10	c.A1177G	p.I393V	ACAGAATTGATTC	.	PASS	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	37	15	65688088	65688088	+	Missense_Mutation	SNP	C	C	A	rs201037111	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	17.0	26.0	0.0	0.485714	0	.	.	weak	.	IGDCC4	95	.	NM_020962	exon7	c.G1411T	p.G471C	ACGTACCCCGTGC	.	PASS	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	37	15	52635394	52635394	+	Missense_Mutation	SNP	T	T	A	rs61731219	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	70.0	36.0	67.0	0.0	0.514286	0	T|0.955;A|0.045	0.045	strong	.	MYO5A	145	.	NM_000259	exon31	c.A3960T	p.R1320S	AGATGATCTTCCA	.	PASS	Atlas-SNP
PBX4	80714	hgsc.bcm.edu	37	19	19680276	19680276	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	115.0	49.0	104.0	0.0	0.426087	0	.	.	none	.	PBX4	34	.	NM_025245	exon5	c.C750T	p.G250G	GAGGCCGCCCTTC	.	PASS	Atlas-SNP
C4orf21	55345	hgsc.bcm.edu	37	4	113553098	113553098	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	88.0	4.0	77.0	0.0	0.0454545	0	.	.	none	.	C4orf21	223	.	NM_018392	exon3	c.C90T	p.H30H	TCCTAAGTGAGTG	.	PASS	Atlas-SNP
POC5	134359	hgsc.bcm.edu	37	5	74998489	74998489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	99.0	4.0	120.0	0.0	0.040404	0	.	.	none	.	POC5	82	.	NM_001099271	exon5	c.T454C	p.S152P	CATCAGAAACAAG	.	PASS	Atlas-SNP
PLA2G4D	283748	hgsc.bcm.edu	37	15	42363433	42363433	+	Silent	SNP	T	T	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	28.0	36.0	0.0	0.636364	0	.	.	none	.	PLA2G4D	72	.	NM_178034	exon17	c.A1764T	p.A588A	TTTAAATGCCTGG	.	PASS	Atlas-SNP
OXLD1	339229	hgsc.bcm.edu	37	17	79632327	79632327	+	Silent	SNP	C	C	T	rs137928765	byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	96.0	40.0	101.0	0.0	0.416667	0	C|1.000;T|0.000	0.000	strong	.	.	.	.	NM_001039842	exon2	c.G348A	p.E116E	GGCCCGCTCCCCA	.	PASS	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	37	17	8413247	8413247	+	Silent	SNP	G	G	A	rs139264814		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	13.0	67.0	0.0	0.22807	0	G|1.000;A|0.000	0.000	weak	.	MYH10	148	.	NM_001256012	exon25	c.C2973T	p.D991D	CTCCTCGTCTAGC	.	PASS	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	37	22	50187853	50187853	+	Missense_Mutation	SNP	C	C	T	rs35331092	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	76.0	38.0	61.0	0.0	0.5	0	C|0.936;T|0.064	0.064	strong	.	BRD1	144	.	NM_014577	exon6	c.G2188A	p.A730T	TCATAGCGCAGGT	.	PASS	Atlas-SNP
SLC5A4	6527	hgsc.bcm.edu	37	22	32647802	32647802	+	Silent	SNP	C	C	T	rs144495809	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	46.0	22.0	42.0	0.0	0.478261	0	C|0.997;T|0.003	0.003	strong	.	SLC5A4	82	.	NM_014227	exon3	c.G267A	p.G89G	TCCTGTCCCAGCC	.	PASS	Atlas-SNP
DEFA5	1670	hgsc.bcm.edu	37	8	6914169	6914169	+	Silent	SNP	G	G	A	rs147432781	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	99.0	45.0	110.0	0.0	0.454545	0	G|0.993;A|0.007	0.007	strong	.	DEFA5	17	.	NM_021010	exon1	c.C51T	p.A17A	AGCCTGGGCCTGC	.	PASS	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	37	22	21064270	21064270	+	Silent	SNP	C	C	T	rs151214632	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	465.0	234.0	429.0	0.0	0.503226	0	C|0.998;T|0.002	0.002	strong	.	PI4KA	313	.	NM_058004	exon53	c.G6099A	p.A2033A	GACGACCGCGTCC	.	PASS	Atlas-SNP
ND6	0	hgsc.bcm.edu	37	MT	14470	14470	+	Silent	SNP	T	T	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	6.0	6.0	10.0	0.0	1	0	.	.	none	.	.	.	.	ENST00000361681	exon1	c.A204T	p.G68G	AGTATATCCAAAG	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	37	2	73829362	73829362	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	200.0	103.0	189.0	0.0	0.515	0	.	.	none	ALMS1,rectum,carcinoma,+2,1	ALMS1	384	1	NM_015120	exon20	c.G12162A	p.R4054R	GGAGCGGATAAAG	.	PASS	Atlas-SNP
XDH	7498	hgsc.bcm.edu	37	2	31593230	31593230	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	63.0	3.0	48.0	0.0	0.047619	0	.	.	none	XDH,colon,carcinoma,0,1	XDH	191	1	NM_000379	exon18	c.G1971A	p.A657A	ATCCTTCGCAAAG	.	scavenged	Atlas-SNP
GDPD4	220032	hgsc.bcm.edu	37	11	76944178	76944178	+	Silent	SNP	G	G	A	rs17751194	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	62.0	36.0	69.0	0.0	0.580645	0	G|0.988;A|0.012	0.012	strong	.	GDPD4	49	.	NM_182833	exon13	c.C1281T	p.T427T	ATTGACGGTGTAT	.	PASS	Atlas-SNP
ZNF77	58492	hgsc.bcm.edu	37	19	2934249	2934249	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	100.0	39.0	76.0	0.0	0.39	0	.	.	none	.	ZNF77	47	.	NM_021217	exon4	c.A876G	p.G292G	TTTCTCTCCAGTG	.	PASS	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	37	6	33133555	33133555	+	Silent	SNP	C	C	T	rs114580597	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	17.0	7.0	18.0	0.0	0.411765	0	C|0.998;T|0.002	0.002	strong	.	COL11A2	124	.	NM_080680	exon63	c.G4521A	p.Q1507Q	GGGCATCTGAATG	.	PASS	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	37	16	16259742	16259742	+	Missense_Mutation	SNP	C	C	T	rs373863345		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	40.0	69.0	0.0	0.547945	0	.	.	weak	.	ABCC6	110	.	NM_001171	exon23	c.G3044A	p.R1015Q	GATGCCCGGGCCC	.	PASS	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	37	12	121416622	121416622	+	Silent	SNP	C	C	G	rs1169289	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	135.0	72.0	134.0	1.0	0.533333	0.00746269	G|0.405;C|0.595	0.405	strong	HNF1A,NS,carcinoma,0,1	HNF1A	302	1	NM_000545	exon1	c.C51G	p.L17L	CCTGCTCGAGTCA	.	scavenged	Atlas-SNP
KIAA1586	57691	hgsc.bcm.edu	37	6	56918933	56918933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	4.0	88.0	0.0	0.0444444	0	.	.	none	.	KIAA1586	59	.	NM_020931	exon4	c.A1636G	p.R546G	CAGTCAAGATCAA	.	PASS	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	37	1	178442222	178442222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	168.0	105.0	126.0	0.0	0.625	0	.	.	none	.	RASAL2	334	.	NM_170692	exon18	c.G3691A	p.V1231M	CGGATCGTGTCCC	.	PASS	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	37	9	5081780	5081780	+	Silent	SNP	G	G	A	rs2230724	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	40.0	75.0	0.0	0.38835	0	G|0.386;A|0.614	0.614	strong	.	JAK2	35466	.	NM_004972	exon19	c.G2490A	p.L830L	TGCCCTGGGGTTT	.	PASS	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	37	2	212587119	212587119	+	Silent	SNP	T	T	C	rs77309171	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	61.0	132.0	0.0	0.559633	0	T|0.997;C|0.003	0.003	strong	.	ERBB4	480	.	NM_001042599	exon7	c.A882G	p.P294P	CTTACGTGGACAT	.	PASS	Atlas-SNP
LGI2	55203	hgsc.bcm.edu	37	4	25014048	25014048	+	Silent	SNP	G	G	A	rs34079294	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	151.0	67.0	110.0	0.0	0.443709	0	G|0.995;A|0.005	0.005	strong	.	LGI2	62	.	NM_018176	exon7	c.C729T	p.Y243Y	GGCCACGTACACA	.	PASS	Atlas-SNP
NOLC1	9221	hgsc.bcm.edu	37	10	103912218	103912218	+	Silent	SNP	C	C	A	rs117993238	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	47.0	19.0	55.0	0.0	0.404255	0	C|0.999;A|0.001	0.001	strong	.	NOLC1	61	.	NM_004741	exon1	c.C51A	p.L17L	TCCCCTCGTGCTC	.	PASS	Atlas-SNP
AKR1C1	1645	hgsc.bcm.edu	37	10	5011027	5011027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	136.0	34.0	171.0	0.0	0.25	0	.	.	none	.	AKR1C1	39	.	NM_001353	exon5	c.G461A	p.C154Y	AGAAGTGTAAAGA	.	PASS	Atlas-SNP
CD247	919	hgsc.bcm.edu	37	1	167407839	167407839	+	Missense_Mutation	SNP	G	G	A	rs148513413	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	95.0	4.0	87.0	0.0	0.0421053	0	G|1.000;A|0.000	0.000	strong	CD247,NS,carcinoma,+1,2	CD247	25	2	NM_198053	exon4	c.C268T	p.R90C	GGCCACGTCTCTT	.	PASS	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	37	5	140188353	140188353	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	66.0	20.0	112.0	0.0	0.30303	0	.	.	none	.	PCDHA4	419	.	NM_031500	exon1	c.G1581A	p.E527E	CGAGGAGCTAGAG	.	PASS	Atlas-SNP
MME	4311	hgsc.bcm.edu	37	3	154859862	154859862	+	Missense_Mutation	SNP	A	A	G	rs138218277	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	151.0	97.0	121.0	0.0	0.642384	0	A|0.999;G|0.001	0.001	strong	.	MME	133	.	NM_007287	exon11	c.A1040G	p.Y347C	TTGTTTATGCTCC	.	PASS	Atlas-SNP
TRAPPC9	83696	hgsc.bcm.edu	37	8	141461017	141461017	+	Silent	SNP	G	G	A	rs61740786	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	51.0	27.0	45.0	0.0	0.529412	0	G|0.989;A|0.011	0.011	strong	.	TRAPPC9	114	.	NM_031466	exon2	c.C750T	p.I250I	TGACTCGATGAAG	.	PASS	Atlas-SNP
NGFR	4804	hgsc.bcm.edu	37	17	47579567	47579567	+	Splice_Site	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	9.0	26.0	0.0	0.257143	0	.	.	none	.	NGFR	46	.	NM_002507	exon2	c.208+1G>A	.	TGGACAGTGAGTA	.	PASS	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	37	2	187605000	187605000	+	Missense_Mutation	SNP	G	G	A	rs73979354	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	107.0	55.0	136.0	0.0	0.514019	0	G|0.987;A|0.013	0.013	strong	.	FAM171B	146	.	NM_177454	exon2	c.G284A	p.R95H	TCAGTCGTCAGTA	.	PASS	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	37	5	141041735	141041735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	129.0	31.0	123.0	0.0	0.24031	0	.	.	none	.	ARAP3	139	.	NM_022481	exon20	c.C2888T	p.S963L	TTCACCGACCGGG	.	PASS	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207170242	207170242	+	Silent	SNP	T	T	C	rs112075178	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	25.0	74.0	0.0	0.520833	0	T|0.979;C|0.021	0.021	strong	.	ZDBF2	531	.	NM_020923	exon5	c.T990C	p.H330H	GAACCATGAGGAA	.	PASS	Atlas-SNP
PERP	64065	hgsc.bcm.edu	37	6	138428379	138428379	+	Silent	SNP	G	G	A	rs145663845	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	37.0	64.0	0.0	0.493333	0	G|0.993;A|0.007	0.007	strong	.	PERP	15	.	NM_022121	exon1	c.C99T	p.R33R	CCAGCCGCGGCCG	.	PASS	Atlas-SNP
LATS2	26524	hgsc.bcm.edu	37	13	21563311	21563311	+	Missense_Mutation	SNP	G	G	A	rs77919685	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	23.0	28.0	0.0	0.522727	0	G|0.986;A|0.014	0.014	strong	.	LATS2	176	.	NM_014572	exon4	c.C608T	p.A203V	TCCAGCGCCGTGG	.	PASS	Atlas-SNP
FAM151B	167555	hgsc.bcm.edu	37	5	79797690	79797690	+	Nonsense_Mutation	SNP	G	G	A	rs149355931	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	208.0	99.0	197.0	0.0	0.475962	0	G|1.000;A|0.000	0.000	strong	.	FAM151B	25	.	NM_205548	exon2	c.G105A	p.W35X	CACCTGGTATCAT	.	PASS	Atlas-SNP
MEGF11	84465	hgsc.bcm.edu	37	15	66206303	66206303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	56.0	25.0	64.0	0.0	0.446429	0	.	.	none	.	MEGF11	70	.	NM_032445	exon20	c.A2482G	p.M828V	CCATCATGAGGGC	.	PASS	Atlas-SNP
CCDC3	83643	hgsc.bcm.edu	37	10	12940631	12940631	+	Missense_Mutation	SNP	C	C	T	rs145872952	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	51.0	83.0	0.0	0.46789	0	C|1.000;T|0.000	0.000	strong	.	CCDC3	27	.	NM_031455	exon3	c.G598A	p.V200I	TCTTGACGTGGTC	.	PASS	Atlas-SNP
MMP27	64066	hgsc.bcm.edu	37	11	102567522	102567522	+	Silent	SNP	G	G	A	rs201248506	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	36.0	55.0	0.0	0.5	0	G|0.999;A|0.001	0.001	strong	.	MMP27	84	.	NM_022122	exon5	c.C664T	p.L222L	GCCCCAGTGCATG	.	PASS	Atlas-SNP
UNC5C	8633	hgsc.bcm.edu	37	4	96140151	96140151	+	Silent	SNP	C	C	T	rs61741188	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	89.0	37.0	91.0	0.0	0.41573	0	C|0.977;T|0.023	0.023	strong	.	UNC5C	141	.	NM_003728	exon9	c.G1614A	p.S538S	TCCCAGCGAGTTG	.	PASS	Atlas-SNP
AP4M1	9179	hgsc.bcm.edu	37	7	99704104	99704104	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	47.0	22.0	46.0	0.0	0.468085	0	.	.	none	.	AP4M1	39	.	NM_004722	exon14	c.G1104A	p.V368V	TCGGGTGCAAGGA	.	PASS	Atlas-SNP
PFAS	5198	hgsc.bcm.edu	37	17	8172506	8172506	+	Missense_Mutation	SNP	T	T	G	rs62637606	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	45.0	92.0	0.0	0.483871	0	T|0.957;G|0.043	0.043	strong	.	PFAS	91	.	NM_012393	exon28	c.T3941G	p.F1314C	CTCCATTTGATAC	.	PASS	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108432670	108432670	+	Missense_Mutation	SNP	G	G	A	rs143914023		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	26.0	67.0	0.0	0.361111	0	G|1.000;A|0.000	0.000	weak	.	SORCS1	534	.	NM_001206572	exon15	c.C2014T	p.R672W	CACACCGTCTATC	.	PASS	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	37	9	135771682	135771682	+	Silent	SNP	C	C	T	rs140352085	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	152.0	63.0	151.0	0.0	0.414474	0	C|1.000;T|0.000	0.000	strong	.	TSC1	167	.	NM_000368	exon23	c.G3435A	p.P1145P	ACTGTCCGGGGTC	.	PASS	Atlas-SNP
FASN	2194	hgsc.bcm.edu	37	17	80044214	80044214	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	4.0	71.0	0.0	0.0506329	0	.	.	none	.	FASN	154	.	NM_004104	exon22	c.C3648T	p.S1216S	GAGGCCGCTGAGC	.	PASS	Atlas-SNP
KLHL12	59349	hgsc.bcm.edu	37	1	202863792	202863792	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	192.0	71.0	144.0	0.0	0.369792	0	.	.	none	.	KLHL12	50	.	NM_021633	exon9	c.C1221T	p.S407S	CAGCATGCTCCAC	.	PASS	Atlas-SNP
GPR116	221395	hgsc.bcm.edu	37	6	46846060	46846060	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	208.0	54.0	219.0	0.0	0.259615	0	.	.	none	.	GPR116	133	.	NM_015234	exon10	c.G1119A	p.L373L	ATTTGCCAAAATT	.	PASS	Atlas-SNP
SIGLEC8	27181	hgsc.bcm.edu	37	19	51961519	51961519	+	Silent	SNP	C	C	A	rs140904107	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	196.0	89.0	178.0	0.0	0.454082	0	C|0.999;A|0.001	0.001	strong	SIGLEC8,NS,carcinoma,-2,1	SIGLEC8	130	1	NM_014442	exon1	c.G123T	p.L41L	GACACACAGGCCC	.	PASS	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	37	7	6550540	6550540	+	Silent	SNP	G	G	A	rs61732373	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	142.0	94.0	87.0	0.0	0.661972	0	G|0.984;A|0.016	0.016	strong	.	GRID2IP	82	.	NM_001145118	exon9	c.C1554T	p.C518C	CTTACCGCAGCTG	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	90079811	90079811	+	Silent	SNP	C	C	T	rs41311745	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	126.0	60.0	90.0	0.0	0.47619	0	A|0.001;C|0.992;T|0.006	0.006	strong	.	GPR98	605	.	NM_032119	exon67	c.C13590T	p.P4530P	TAATCCCAATTCC	.	PASS	Atlas-SNP
SLC6A2	6530	hgsc.bcm.edu	37	16	55690874	55690874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	42.0	20.0	67.0	0.0	0.47619	0	.	.	none	SLC6A2_ENST00000219833,colon,carcinoma,0,2	SLC6A2	189	2	NM_001172501	exon2	c.G268A	p.G90S	AAGAACGGCGGCG	.	PASS	Atlas-SNP
GPR113	165082	hgsc.bcm.edu	37	2	26533898	26533898	+	Missense_Mutation	SNP	C	C	T	rs72811754	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	66.0	40.0	65.0	0.0	0.606061	0	C|0.998;T|0.002	0.002	strong	.	GPR113	134	.	NM_001145168	exon11	c.G2698A	p.V900I	GGGTGACACCTGC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179611851	179611851	+	Silent	SNP	C	C	T	rs72648910	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	148.0	32.0	131.0	0.0	0.216216	0	C|0.965;T|0.035	0.035	strong	TTN_ENST00000360870,NS,carcinoma,-2,1	TTN	18412	1	NM_133379	exon46	c.G15276A	p.L5092L	TCTCTCCAGAGTC	.	PASS	Atlas-SNP
IL12RB2	3595	hgsc.bcm.edu	37	1	67833643	67833643	+	Missense_Mutation	SNP	G	G	A	rs2307153	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	80.0	34.0	89.0	0.0	0.425	0	G|0.986;A|0.014	0.014	strong	.	IL12RB2	94	.	NM_001559	exon10	c.G1394A	p.G465D	CAGGGGGTGACAC	.	PASS	Atlas-SNP
MASTL	84930	hgsc.bcm.edu	37	10	27458886	27458886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	59.0	20.0	73.0	0.0	0.338983	0	.	.	none	.	MASTL	81	.	NM_032844	exon8	c.C998T	p.A333V	ATGAAGCATTGGG	.	PASS	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38385707	38385707	+	Silent	SNP	G	G	A	rs189713744	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	29.0	57.0	0.0	0.453125	0	G|1.000;A|0.000	0.000	strong	.	WDR87	191	.	NM_031951	exon4	c.C519T	p.A173A	ACACAGGGCCAGG	.	PASS	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	37	12	50186585	50186585	+	Silent	SNP	T	T	C	rs138292278	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	78.0	34.0	54.0	0.0	0.435897	0	T|0.993;C|0.007	0.007	strong	.	NCKAP5L	142	.	NM_001037806	exon11	c.A3525G	p.T1175T	CTCCAGTGTGTGG	.	PASS	Atlas-SNP
ARHGEF35	445328	hgsc.bcm.edu	37	7	143884216	143884216	+	Missense_Mutation	SNP	G	G	C	rs200777966	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	458.0	88.0	294.0	0.0	0.19214	0	G|0.999;C|0.001	0.001	strong	.	ARHGEF35	11	.	NM_001003702	exon2	c.C1261G	p.L421V	GAAACAGGTCACA	.	PASS	Atlas-SNP
RASSF2	9770	hgsc.bcm.edu	37	20	4768282	4768282	+	Silent	SNP	G	G	A	rs6052876	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	98.0	36.0	114.0	0.0	0.367347	0	G|0.954;A|0.046	0.046	strong	.	RASSF2	75	.	NM_014737	exon10	c.C810T	p.Y270Y	CACGTCGTAGGTG	.	PASS	Atlas-SNP
CLIP1	6249	hgsc.bcm.edu	37	12	122825398	122825398	+	Missense_Mutation	SNP	C	C	T	rs61954403	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	174.0	93.0	175.0	0.0	0.534483	0	C|0.990;T|0.010	0.010	strong	.	CLIP1	126	.	NM_001247997	exon11	c.G2353A	p.E785K	TACCTTCGGAACT	.	PASS	Atlas-SNP
YARS	8565	hgsc.bcm.edu	37	1	33246709	33246709	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	62.0	31.0	53.0	0.0	0.5	0	.	.	none	.	YARS	34	.	NM_003680	exon10	c.A1080G	p.P360P	CTCCTCTGGTTCT	.	PASS	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	37	1	222712108	222712108	+	Missense_Mutation	SNP	G	G	T	rs116359984	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	118.0	63.0	119.0	0.0	0.533898	0	G|0.995;T|0.005	0.005	strong	.	HHIPL2	122	.	NM_024746	exon5	c.C1459A	p.L487M	TTGGCAGAACATC	.	PASS	Atlas-SNP
MRPL1	65008	hgsc.bcm.edu	37	4	78792906	78792906	+	Missense_Mutation	SNP	C	C	T	rs373565703		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	108.0	51.0	126.0	0.0	0.472222	0	.	.	weak	.	MRPL1	37	.	NM_020236	exon2	c.C40T	p.H14Y	TTGATACATCATC	.	PASS	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	37	13	38225406	38225406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	237.0	112.0	254.0	1.0	0.472574	0.00393701	.	.	none	.	TRPC4	389	.	NM_003306	exon8	c.T2075C	p.I692T	ACCCCTATTGTTC	.	PASS	Atlas-SNP
BIN1	274	hgsc.bcm.edu	37	2	127811561	127811561	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	162.0	67.0	173.0	0.0	0.41358	0	.	.	none	.	BIN1	85	.	NM_139343	exon13	c.C1159T	p.Q387X	TGGCCTGCTCCGA	.	PASS	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824953	20824953	+	Silent	SNP	G	G	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	9.0	9.0	2.0	0.0	1	0	.	.	none	.	SP8	43	.	NM_182700	exon2	c.C483G	p.G161G	GCCGCCGCCCCCG	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123917045	123917045	+	Missense_Mutation	SNP	A	A	G	rs149632088	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	39.0	56.0	0.0	0.6	0	A|0.999;G|0.001	0.001	strong	.	CNTRL	161	.	NM_007018	exon25	c.A4219G	p.I1407V	CTAGAAATAGAAA	.	PASS	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	37	2	128528508	128528508	+	Silent	SNP	C	C	T	rs55916728	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	149.0	75.0	121.0	0.0	0.503356	0	C|0.972;T|0.028	0.028	strong	.	WDR33	136	.	NM_001006623	exon2	c.G48A	p.R16R	CTGGAACCTTGGC	.	PASS	Atlas-SNP
TBX4	9496	hgsc.bcm.edu	37	17	59560751	59560751	+	Silent	SNP	G	G	A	rs117324438	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	53.0	94.0	0.0	0.514563	0	G|0.999;A|0.001	0.001	strong	.	TBX4	69	.	NM_018488	exon8	c.G1512A	p.K504K	GAGGAAGCCACCC	.	PASS	Atlas-SNP
RTN4RL1	146760	hgsc.bcm.edu	37	17	1840677	1840677	+	Missense_Mutation	SNP	C	C	T	rs181444163	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	63.0	35.0	70.0	0.0	0.555556	0	C|0.995;T|0.005	0.005	strong	RTN4RL1,NS,carcinoma,0,1	RTN4RL1	21	1	NM_178568	exon2	c.G439A	p.G147S	GCAGGCCGCCAAA	.	PASS	Atlas-SNP
AGPAT2	10555	hgsc.bcm.edu	37	9	139571430	139571430	+	Missense_Mutation	SNP	G	G	A	rs142993240	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	40.0	81.0	0.0	0.43956	0	G|0.997;A|0.003	0.003	strong	.	AGPAT2	17	.	NM_001012727	exon3	c.C475T	p.R159C	CCATGCGCTCGCC	.	PASS	Atlas-SNP
PEMT	10400	hgsc.bcm.edu	37	17	17409140	17409140	+	Missense_Mutation	SNP	G	G	A	rs140621950	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	151.0	64.0	152.0	0.0	0.423841	0	G|0.999;A|0.001	0.001	strong	.	PEMT	12	.	NM_148172	exon7	c.C676T	p.R226W	TCTGCCGGTAGAT	.	PASS	Atlas-SNP
ZNF645	158506	hgsc.bcm.edu	37	X	22291942	22291942	+	Silent	SNP	G	G	A	rs138094158	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	161.0	160.0	156.0	0.0	0.993789	0	G|0.997;A|0.003	0.003	strong	.	ZNF645	67	.	NM_152577	exon1	c.G834A	p.Q278Q	ACCTCAGAAACAG	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152722368	152722368	+	Missense_Mutation	SNP	A	A	G	rs138004884	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	156.0	63.0	159.0	0.0	0.403846	0	A|0.999;G|0.001	0.001	strong	.	SYNE1	3227	.	NM_033071	exon47	c.T6955C	p.F2319L	TAATAAACTTCTC	.	PASS	Atlas-SNP
BAGE3	85318	hgsc.bcm.edu	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	238.0	14.0	200.0	0.0	0.0588235	0	C|0.750;T|0.250	0.250	strong	.	.	.	.	NM_182481	exon3	c.G118A	p.D40N	GCACATCGCTGAA	.	PASS	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	37	12	56995907	56995907	+	Missense_Mutation	SNP	G	G	A	rs202169462	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	87.0	45.0	87.0	0.0	0.517241	0	G|0.999;A|0.001	0.001	strong	.	BAZ2A	263	.	NM_013449	exon20	c.C3500T	p.A1167V	AAGAGGGCAGGGT	.	PASS	Atlas-SNP
MEGF6	1953	hgsc.bcm.edu	37	1	3417545	3417545	+	Missense_Mutation	SNP	A	A	G	rs41303857	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	127.0	57.0	83.0	0.0	0.448819	0	A|0.998;G|0.002	0.002	strong	.	MEGF6	91	.	NM_001409	exon20	c.T2560C	p.F854L	AGCTAAAGCCGGT	.	PASS	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	372.0	85.0	275.0	1.0	0.228495	0.00363636	.	.	weak	PIK3CA_ENST00000263967,NS,carcinoma,0,745	PIK3CA	8460	745	NM_006218	exon10	c.G1624A	p.E542K	CTCTCTGAAATCA	.	scavenged	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	37	6	146977963	146977963	+	Silent	SNP	A	A	C	rs79354452	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	157.0	74.0	139.0	0.0	0.471338	0	A|0.992;C|0.008	0.008	strong	.	ADGB	93	.	NM_024694	exon5	c.A459C	p.G153G	TGGAGGAATTTTG	.	PASS	Atlas-SNP
SLC22A14	9389	hgsc.bcm.edu	37	3	38357067	38357067	+	Missense_Mutation	SNP	T	T	C	rs34256819	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	106.0	31.0	64.0	0.0	0.292453	0	T|0.997;C|0.003	0.003	strong	.	SLC22A14	64	.	NM_004803	exon8	c.T1397C	p.L466P	TCAGACTCAAGTG	.	PASS	Atlas-SNP
HK1	3098	hgsc.bcm.edu	37	10	71142492	71142492	+	Silent	SNP	C	C	T	rs140498607	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	49.0	17.0	51.0	0.0	0.346939	0	C|0.997;T|0.003	0.003	strong	.	HK1	170	.	NM_033498	exon13	c.C1527T	p.N509N	GCACAACAATGCC	.	PASS	Atlas-SNP
UBXN2B	137886	hgsc.bcm.edu	37	8	59329407	59329407	+	Splice_Site	SNP	A	A	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	33.0	10.0	54.0	0.0	0.30303	0	.	.	none	.	UBXN2B	36	.	NM_001077619	exon2	c.85-2A>T	.	TTATGTAGTTGGC	.	PASS	Atlas-SNP
ERCC1	2067	hgsc.bcm.edu	37	19	45923598	45923598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	59.0	38.0	68.0	0.0	0.644068	0	.	.	none	.	ERCC1	46	.	NM_001983	exon4	c.T409C	p.C137R	GGGCACAGGTGCT	.	PASS	Atlas-SNP
RABGAP1	23637	hgsc.bcm.edu	37	9	125748669	125748669	+	Silent	SNP	A	A	G	rs376096787		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	205.0	107.0	199.0	0.0	0.521951	0	.	.	weak	.	RABGAP1	164	.	NM_012197	exon4	c.A561G	p.S187S	CCTTTCAGTGCCG	.	PASS	Atlas-SNP
MFI2	4241	hgsc.bcm.edu	37	3	196742243	196742243	+	Missense_Mutation	SNP	C	C	T	rs45625439	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	107.0	66.0	91.0	0.0	0.616822	0	C|0.991;T|0.009	0.009	strong	.	MFI2	88	.	NM_005929	exon9	c.G1226A	p.R409Q	TGGATCCGCTCCA	.	PASS	Atlas-SNP
CLEC16A	23274	hgsc.bcm.edu	37	16	11272479	11272479	+	Missense_Mutation	SNP	G	G	A	rs74163631	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	26.0	13.0	10.0	0.0	0.5	0	.	.	weak	.	CLEC16A	101	.	NM_015226	exon23	c.G3094A	p.A1032T	CCGGCTGCCGCCT	.	PASS	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	37	8	141840574	141840574	+	Silent	SNP	G	G	A	rs148611560	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	165.0	82.0	160.0	0.0	0.49697	0	G|0.998;A|0.002	0.002	strong	.	PTK2	311	.	NM_005607	exon8	c.C711T	p.V237V	TACCTTGACAGAA	.	PASS	Atlas-SNP
CCDC60	160777	hgsc.bcm.edu	37	12	119961587	119961587	+	Missense_Mutation	SNP	G	G	A	rs78218795	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	60.0	32.0	68.0	0.0	0.533333	0	G|0.968;A|0.032	0.032	strong	.	CCDC60	84	.	NM_178499	exon11	c.G1193A	p.G398D	AGGCTGGCTTCTG	.	PASS	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	37	9	135804239	135804239	+	Silent	SNP	G	G	A	rs145987906	byfrequency;alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	82.0	52.0	84.0	0.0	0.634146	0	G|1.000;C|0.000	.	alt	.	TSC1	167	.	NM_000368	exon3	c.C21T	p.V7V	CTCCCCGACATTT	.	PASS	Atlas-SNP
GPER	2852	hgsc.bcm.edu	37	7	1132384	1132384	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	174.0	64.0	121.0	0.0	0.367816	0	.	.	none	.	GPER	25	.	NM_001505	exon2	c.G1020A	p.E340E	CATTGAGCAGAAA	.	PASS	Atlas-SNP
NSUN5	55695	hgsc.bcm.edu	37	7	72721583	72721583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	62.0	4.0	41.0	0.0	0.0645161	0	.	.	none	.	NSUN5	47	.	NM_148956	exon3	c.C388A	p.P130T	TACCTGGACCAGG	.	PASS	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	37	8	141685537	141685537	+	Missense_Mutation	SNP	G	G	A	rs191246950	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	132.0	54.0	105.0	0.0	0.409091	0	G|0.998;A|0.002	0.002	strong	.	PTK2	311	.	NM_001199649	exon28	c.C2624T	p.A875V	CTTTCCGCCCAAT	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84609249	84609249	+	Silent	SNP	A	A	T	rs116948895	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	70.0	29.0	65.0	0.0	0.414286	0	A|0.993;T|0.007	0.007	strong	.	.	.	.	NM_001001670	exon4	c.A3864T	p.P1288P	TTTCCCACCAGCT	.	PASS	Atlas-SNP
ACSS1	84532	hgsc.bcm.edu	37	20	25003705	25003705	+	Silent	SNP	A	A	C	rs41308619	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	16.0	46.0	0.0	0.355556	0	A|0.960;C|0.040	0.040	strong	.	ACSS1	46	.	NM_001252677	exon5	c.T831G	p.V277V	GGCGCAAACAGGG	.	PASS	Atlas-SNP
GSTA4	2941	hgsc.bcm.edu	37	6	52850270	52850270	+	Missense_Mutation	SNP	T	T	C	rs151284340	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	153.0	62.0	129.0	0.0	0.405229	0	T|0.999;C|0.001	0.001	strong	GSTA4,right_upper_lobe,carcinoma,+1,1	GSTA4	20	1	NM_001512	exon4	c.A251G	p.K84R	AGGTTCTTGCCAA	.	PASS	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	37	12	333267	333267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	42.0	79.0	0.0	0.5	0	.	.	none	.	SLC6A13	62	.	NM_016615	exon11	c.C1202T	p.A401V	ACCAGCGCTGTCA	.	PASS	Atlas-SNP
VPS9D1	9605	hgsc.bcm.edu	37	16	89774870	89774870	+	Silent	SNP	C	C	T	rs369209003		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	205.0	104.0	177.0	0.0	0.507317	0	.	.	weak	C16orf7,colon,carcinoma,-1,1	.	.	1	NM_004913	exon14	c.G1767A	p.S589S	GCACTCCGACACC	.	PASS	Atlas-SNP
GTF2F1	2962	hgsc.bcm.edu	37	19	6392906	6392906	+	Missense_Mutation	SNP	G	G	T	rs151336104	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	80.0	35.0	70.0	0.0	0.4375	0	G|0.999;T|0.001	0.001	strong	.	GTF2F1	39	.	NM_002096	exon2	c.C21A	p.S7R	CTGGCTGCTAGGG	.	PASS	Atlas-SNP
VPS36	51028	hgsc.bcm.edu	37	13	52997751	52997751	+	Silent	SNP	G	G	A	rs148697614	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	16.0	6.0	10.0	0.0	0.375	0	G|0.997;A|0.003	0.003	strong	.	VPS36	38	.	NM_016075	exon10	c.C798T	p.L266L	CTCCGTGAGTGAC	.	PASS	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	37	19	17212925	17212925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	33.0	14.0	40.0	0.0	0.424242	0	.	.	none	.	MYO9B	264	.	NM_001130065	exon2	c.G398A	p.R133Q	CCACCCGGCGCCT	.	PASS	Atlas-SNP
ARFRP1	10139	hgsc.bcm.edu	37	20	62333231	62333231	+	Missense_Mutation	SNP	G	G	A	rs139547982	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	123.0	59.0	120.0	0.0	0.479675	0	G|0.999;A|0.001	0.001	strong	ARFRP1,colon,carcinoma,+1,1	ARFRP1	17	1	NM_001134758	exon6	c.C368T	p.A123V	CACAGCGCCTCGC	.	PASS	Atlas-SNP
DCPS	28960	hgsc.bcm.edu	37	11	126213242	126213242	+	Missense_Mutation	SNP	G	G	A	rs35836343	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	37.0	19.0	36.0	0.0	0.513514	0	G|0.995;A|0.005	0.005	strong	.	DCPS	33	.	NM_014026	exon5	c.G677A	p.G226D	GCCGGGGCATCAG	.	PASS	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	37	1	10364260	10364260	+	Missense_Mutation	SNP	A	A	G	rs148481786	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	71.0	43.0	70.0	0.0	0.605634	0	A|0.994;G|0.006	0.006	strong	.	KIF1B	242	.	NM_183416	exon21	c.A3017G	p.E1006G	GCCAAGAAAAAGG	.	PASS	Atlas-SNP
OR10K2	391107	hgsc.bcm.edu	37	1	158390378	158390378	+	Silent	SNP	A	A	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	231.0	139.0	175.0	1.0	0.601732	0.00571429	.	.	none	OR10K2,rectum,carcinoma,-1,1	OR10K2	69	1	NM_001004476	exon1	c.T279A	p.S93S	CAGGAAAGAAATG	.	PASS	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	37	22	51160581	51160581	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	14.0	9.0	9.0	0.0	0.642857	0	.	.	none	.	SHANK3	96	.	NM_033517	exon21	c.C4278T	p.S1426S	GGACAGCGAGCTC	.	PASS	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	37	11	18318354	18318354	+	Missense_Mutation	SNP	C	C	T	rs143784823	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	178.0	81.0	145.0	0.0	0.455056	0	C|0.997;T|0.003	0.003	strong	.	HPS5	70	.	NM_181507	exon12	c.G1501A	p.G501R	CATTTCCGTGTGA	.	PASS	Atlas-SNP
SLITRK1	114798	hgsc.bcm.edu	37	13	84454391	84454391	+	Missense_Mutation	SNP	T	T	A	rs150504822	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	141.0	73.0	110.0	0.0	0.51773	0	T|0.999;A|0.001	0.001	strong	.	SLITRK1	196	.	NM_052910	exon1	c.A1252T	p.T418S	TGAAAGTGTTGTT	.	PASS	Atlas-SNP
MED24	9862	hgsc.bcm.edu	37	17	38178679	38178679	+	Missense_Mutation	SNP	G	G	A	rs149459087	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	60.0	97.0	0.0	0.550459	0	G|0.998;A|0.002	0.002	strong	.	MED24	89	.	NM_014815	exon22	c.C2491T	p.R831C	TCTGGCGGGTGGA	.	PASS	Atlas-SNP
URB2	9816	hgsc.bcm.edu	37	1	229787055	229787055	+	Missense_Mutation	SNP	G	G	A	rs41310553	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	101.0	40.0	130.0	0.0	0.39604	0	G|0.986;A|0.014	0.014	strong	.	URB2	152	.	NM_014777	exon8	c.G4223A	p.R1408Q	AAGGGCGGCAGAA	.	PASS	Atlas-SNP
APLP1	333	hgsc.bcm.edu	37	19	36370092	36370092	+	Silent	SNP	C	C	T	rs138562956	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	37.0	16.0	35.0	0.0	0.432432	0	C|0.999;T|0.001	0.001	strong	.	APLP1	77	.	NM_001024807	exon16	c.C1830T	p.Y610Y	GCCCTACGGGGCT	.	PASS	Atlas-SNP
CALHM3	119395	hgsc.bcm.edu	37	10	105238527	105238527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	61.0	33.0	66.0	0.0	0.540984	0	.	.	none	.	CALHM3	46	.	NM_001129742	exon1	c.G263A	p.R88Q	TTCCTCCGGTGCC	.	PASS	Atlas-SNP
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32549582	32549582	+	Missense_Mutation	SNP	G	G	T	rs200516145	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	172.0	22.0	145.0	0.0	0.127907	0	.	.	weak	.	HLA-DRB1	41	.	NM_002124	exon3	c.C404A	p.T135N	GGCTGGGTCTTTG	.	PASS	Atlas-SNP
CPO	130749	hgsc.bcm.edu	37	2	207834049	207834049	+	Silent	SNP	G	G	C	rs139758524	byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	119.0	59.0	119.0	0.0	0.495798	0	G|1.000;C|0.000	0.000	strong	.	CPO	42	.	NM_173077	exon9	c.G1014C	p.L338L	TGTGCTGTCAGTC	.	PASS	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	37	17	39595537	39595537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	89.0	5.0	63.0	0.0	0.0561798	0	.	.	none	.	KRT38	63	.	NM_006771	exon3	c.C650T	p.A217V	AGGGTCGCATCAT	.	PASS	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	37	12	51500329	51500329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	59.0	4.0	62.0	0.0	0.0677966	0	.	.	none	.	TFCP2	49	.	NM_001173452	exon8	c.G896A	p.S299N	AAACTGCTATGGG	.	PASS	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	37	1	247007232	247007232	+	Splice_Site	SNP	T	T	A	rs148600466	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	209.0	102.0	231.0	0.0	0.488038	0	T|0.992;A|0.008	0.008	strong	.	AHCTF1	187	.	NM_015446	exon35	c.6419-2A>T	.	TTTAGCTAAAAAA	.	PASS	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	37	9	16419519	16419519	+	Missense_Mutation	SNP	G	G	A	rs117452684	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	77.0	38.0	71.0	0.0	0.493506	0	G|0.979;A|0.021	0.021	strong	.	BNC2	166	.	NM_017637	exon7	c.C2768T	p.A923V	TGCTGGGCACCAT	.	PASS	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150947128	150947128	+	Silent	SNP	G	G	A	rs34166097	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	152.0	62.0	116.0	0.0	0.407895	0	G|0.970;A|0.030	0.030	strong	.	FAT2	465	.	NM_001447	exon1	c.C1365T	p.A455A	GAGGGGGGCATGG	.	PASS	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60899513	60899513	+	Missense_Mutation	SNP	C	C	A	rs148177752	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	48.0	89.0	0.0	0.533333	0	C|0.996;A|0.004	0.004	strong	.	LAMA5	268	.	NM_005560	exon42	c.G5627T	p.G1876V	CCAGAGCCAGGGA	.	PASS	Atlas-SNP
SYVN1	84447	hgsc.bcm.edu	37	11	64897292	64897292	+	Missense_Mutation	SNP	C	C	T	rs141712194	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	102.0	47.0	87.0	0.0	0.460784	0	C|0.999;T|0.001	0.001	strong	.	SYVN1	55	.	NM_172230	exon14	c.G1504A	p.A502T	GCCGGGCCTCCAG	.	PASS	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	37	18	2929103	2929103	+	Missense_Mutation	SNP	G	G	A	rs104895500	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	100.0	28.0	48.0	0.0	0.28	0	G|0.998;A|0.002	0.002	strong	.	LPIN2	75	.	NM_014646	exon10	c.C1510T	p.L504F	CTATAAGTCCAGG	.	PASS	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	37	15	55965666	55965666	+	Silent	SNP	A	A	G	rs75403514	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	154.0	72.0	176.0	0.0	0.467532	0	A|0.994;G|0.006	0.006	strong	.	PRTG	110	.	NM_173814	exon10	c.T1755C	p.S585S	GTAGACACTGTCA	.	PASS	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	37	15	41857307	41857307	+	Missense_Mutation	SNP	G	G	A	rs141641556	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	6.0	52.0	0.0	0.136364	0	G|0.992;A|0.008	0.008	strong	TYRO3_ENST00000263798,NS,haematopoietic_neoplasm,0,2	TYRO3	169	2	NM_006293	exon6	c.G751A	p.G251S	GCTGATGGCCGAG	.	scavenged	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	37	19	23927604	23927604	+	Missense_Mutation	SNP	T	T	C	rs147282314	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	38.0	61.0	0.0	0.506667	0	T|0.999;C|0.001	0.001	strong	.	ZNF681	76	.	NM_138286	exon4	c.A748G	p.R250G	TGTCTCTAGTATA	.	PASS	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	37	1	97547947	97547947	+	Missense_Mutation	SNP	T	T	A	rs67376798	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	128.0	62.0	141.0	0.0	0.484375	0	T|0.996;A|0.004	0.004	strong	.	DPYD	219	.	NM_000110	exon22	c.A2846T	p.D949V	TCTTCATCAATCA	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	37	12	104025446	104025446	+	Silent	SNP	G	G	A	rs147053330	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	126.0	58.0	137.0	0.0	0.460317	0	G|0.994;A|0.006	0.006	strong	.	STAB2	370	.	NM_017564	exon6	c.G558A	p.A186A	CTCTGCGTACACT	.	PASS	Atlas-SNP
FAM153B	202134	hgsc.bcm.edu	37	5	175530780	175530780	+	Missense_Mutation	SNP	C	C	T	rs200265244	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	923.0	206.0	913.0	1.0	0.223185	0.00109529	C|0.999;T|0.001	0.001	weak	.	FAM153B	28	.	NM_001265615	exon13	c.C526T	p.R176C	CCACAACGTGGTA	.	PASS	Atlas-SNP
GNL2	29889	hgsc.bcm.edu	37	1	38061396	38061396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	165.0	9.0	156.0	0.0	0.0545455	0	.	.	none	.	GNL2	58	.	NM_013285	exon1	c.A28G	p.S10G	TGGTGCTCCGTCC	.	PASS	Atlas-SNP
SLC25A12	8604	hgsc.bcm.edu	37	2	172671648	172671648	+	Missense_Mutation	SNP	A	A	C	rs200754828		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	215.0	95.0	189.0	0.0	0.44186	0	A|0.999;C|0.001	0.001	weak	.	SLC25A12	59	.	NM_003705	exon10	c.T995G	p.L332R	GAGCCCAGAGTGA	.	PASS	Atlas-SNP
SLC22A24	283238	hgsc.bcm.edu	37	11	62902146	62902146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	160.0	49.0	120.0	0.0	0.30625	0	.	.	none	.	SLC22A24	31	.	NM_001136506	exon2	c.T497C	p.L166P	TCTGAAAGATGGC	.	PASS	Atlas-SNP
CD300LG	146894	hgsc.bcm.edu	37	17	41926023	41926023	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	106.0	60.0	88.0	0.0	0.566038	0	.	.	none	.	CD300LG	46	.	NM_001168323	exon2	c.G141A	p.R47R	CCACCGGAAGTAC	.	PASS	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	37	3	58080639	58080639	+	Silent	SNP	C	C	T	rs141151998	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	123.0	43.0	78.0	0.0	0.349593	0	C|0.999;T|0.001	0.001	strong	FLNB_ENST00000490882,NS,carcinoma,0,2	FLNB	430	2	NM_001457	exon5	c.C864T	p.D288D	AGGAGACGTGATG	.	PASS	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	37	14	105352910	105352910	+	Silent	SNP	G	G	A	rs373896765		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	41.0	16.0	19.0	0.0	0.390244	0	.	.	weak	.	.	.	.	NM_001112726	exon12	c.G2334A	p.T778T	GCCCACGTGGAGC	.	PASS	Atlas-SNP
ABL1	25	hgsc.bcm.edu	37	9	133761001	133761001	+	Silent	SNP	A	A	G	rs1056171	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	112.0	58.0	108.0	2.0	0.517857	0.0185185	A|0.391;G|0.609	0.609	strong	ABL1,scalp,carcinoma,+2,1	ABL1	1632	1	NM_007313	exon11	c.A3381G	p.P1127P	TGGTCCAGCGGCC	.	scavenged	Atlas-SNP
ZNF230	7773	hgsc.bcm.edu	37	19	44515492	44515492	+	Missense_Mutation	SNP	T	T	A	rs6413542	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	31.0	41.0	0.0	0.563636	0	T|0.992;A|0.008	0.008	strong	.	ZNF230	44	.	NM_006300	exon5	c.T1301A	p.F434Y	GGTCTTTCTGTAA	.	PASS	Atlas-SNP
TRMT2A	27037	hgsc.bcm.edu	37	22	20103263	20103263	+	Missense_Mutation	SNP	G	G	T	rs9605067	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	201.0	97.0	189.0	0.0	0.482587	0	G|0.978;T|0.022	0.022	strong	.	TRMT2A	34	.	NM_001257994	exon3	c.C640A	p.L214I	GCTCGAGCAGCCA	.	PASS	Atlas-SNP
CSRP2BP	57325	hgsc.bcm.edu	37	20	18143261	18143261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	63.0	30.0	72.0	0.0	0.47619	0	.	.	none	.	CSRP2BP	80	.	NM_020536	exon6	c.A1343G	p.Q448R	AGCCTCAGCTGGA	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	8995959	8995959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	14.0	51.0	0.0	0.311111	0	.	.	none	.	MUC16	4315	.	NM_024690	exon62	c.C41282A	p.T13761N	CTGCTGGTGGTGG	.	PASS	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	37	2	207527656	207527656	+	Missense_Mutation	SNP	A	A	G	rs201792178	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	187.0	88.0	172.0	0.0	0.470588	0	A|0.999;G|0.001	0.001	strong	DYTN_ENST00000452335,colon,carcinoma,-1,1	DYTN	168	1	NM_001093730	exon11	c.T1604C	p.M535T	GCATCCATAAGTT	.	PASS	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	37	4	5642347	5642347	+	Missense_Mutation	SNP	G	G	C	rs141287105	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	151.0	66.0	149.0	0.0	0.437086	0	G|0.995;C|0.005	0.005	strong	.	EVC2	202	.	NM_147127	exon10	c.C1364G	p.T455R	TCAGCTGTCAATG	.	PASS	Atlas-SNP
EPHA2	1969	hgsc.bcm.edu	37	1	16458339	16458339	+	Silent	SNP	G	G	A	rs112285834	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	28.0	53.0	0.0	0.35443	0	G|0.990;A|0.010	0.010	strong	.	EPHA2	102	.	NM_004431	exon14	c.C2352T	p.T784T	CGGGGCGGTCCAG	.	PASS	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	37	19	17945696	17945696	+	Missense_Mutation	SNP	C	C	T	rs3213409	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	51.0	72.0	0.0	0.566667	0	C|0.991;T|0.009	0.009	strong	JAK3,NS,haematopoietic_neoplasm,0,2	JAK3	341	2	NM_000215	exon16	c.G2164A	p.V722I	TGGTGACGCCACT	.	PASS	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	37	2	168099555	168099555	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	71.0	21.0	85.0	0.0	0.295775	0	.	.	none	.	XIRP2	914	.	NM_152381	exon9	c.C1653T	p.D551D	AAATGACAGTTCT	.	PASS	Atlas-SNP
KIAA1598	57698	hgsc.bcm.edu	37	10	118713596	118713596	+	Silent	SNP	G	G	A	rs117277365	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	76.0	21.0	80.0	0.0	0.276316	0	G|0.999;A|0.001	0.001	strong	.	KIAA1598	74	.	NM_001258299	exon5	c.C393T	p.A131A	CTCGGCGGCACCG	.	PASS	Atlas-SNP
JUP	3728	hgsc.bcm.edu	37	17	39925713	39925713	+	Missense_Mutation	SNP	C	C	T	rs41283425	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	110.0	48.0	95.0	0.0	0.436364	0	C|0.962;T|0.038	0.038	strong	.	JUP	64	.	NM_021991	exon3	c.G425A	p.R142H	AGGGCGCGAGTGG	.	PASS	Atlas-SNP
CUL3	8452	hgsc.bcm.edu	37	2	225365109	225365109	+	Silent	SNP	T	T	A	rs41373148	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	87.0	41.0	96.0	0.0	0.471264	0	T|0.987;A|0.013	0.013	strong	.	CUL3	96	.	NM_001257198	exon11	c.A1599T	p.A533A	TCTTGGTGCTGGT	.	PASS	Atlas-SNP
DHX38	9785	hgsc.bcm.edu	37	16	72132832	72132832	+	Silent	SNP	G	G	A	rs150221434	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	128.0	61.0	113.0	0.0	0.476562	0	G|0.999;A|0.001	0.001	strong	.	DHX38	91	.	NM_014003	exon6	c.G771A	p.V257V	GTCTGTGAGGGGC	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	37	2	170060670	170060670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	153.0	48.0	126.0	0.0	0.313726	0	.	.	none	.	LRP2	751	.	NM_004525	exon42	c.C7827G	p.D2609E	GTACAAGTCAGTC	.	PASS	Atlas-SNP
CDH13	1012	hgsc.bcm.edu	37	16	83636136	83636136	+	Silent	SNP	G	G	A	rs371581191		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	78.0	42.0	101.0	0.0	0.538462	0	.	.	weak	.	CDH13	97	.	NM_001220488	exon9	c.G1179A	p.T393T	AGGCACGGCCACA	.	PASS	Atlas-SNP
ETFB	2109	hgsc.bcm.edu	37	19	51856469	51856469	+	Missense_Mutation	SNP	G	G	A	rs147353781	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	49.0	28.0	44.0	0.0	0.571429	0	G|0.999;A|0.001	0.001	strong	ETFB_ENST00000309244,NS,carcinoma,0,2	ETFB	46	2	NM_001014763	exon2	c.C565T	p.R189C	CCAAGCGTTCTGC	.	PASS	Atlas-SNP
AKT1	207	hgsc.bcm.edu	37	14	105239894	105239894	+	Silent	SNP	C	C	T	rs1130233	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	89.0	114.0	0.0	0.988889	0	C|0.769;T|0.231	0.231	strong	.	AKT1	379	.	NM_005163	exon9	c.G726A	p.E242E	CACACGCTCCCGG	.	PASS	Atlas-SNP
MIB2	142678	hgsc.bcm.edu	37	1	1564064	1564064	+	Missense_Mutation	SNP	G	G	A	rs201947158	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	136.0	66.0	102.0	0.0	0.485294	0	.	.	weak	.	MIB2	62	.	NM_080875	exon16	c.G2509A	p.A837T	GATGGGGCCGGGG	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228495867	228495867	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	118.0	53.0	113.0	0.0	0.449153	0	.	.	none	.	OBSCN	2142	.	NM_001271223	exon58	c.G15393A	p.E5131E	CGATGAGGATGTT	.	PASS	Atlas-SNP
SCAF8	22828	hgsc.bcm.edu	37	6	155123273	155123273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	85.0	4.0	67.0	0.0	0.0470588	0	.	.	none	.	SCAF8	122	.	NM_014892	exon7	c.T775C	p.F259L	GTCTCCTTTAACA	.	PASS	Atlas-SNP
GAB2	9846	hgsc.bcm.edu	37	11	77930447	77930447	+	Silent	SNP	G	G	A	rs61749244	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	95.0	52.0	107.0	0.0	0.547368	0	G|0.983;A|0.017	0.017	strong	GAB2,rectum,carcinoma,-2,4	GAB2	63	4	NM_080491	exon10	c.C1902T	p.S634S	GGTGACGGATGAA	.	PASS	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	37	5	16877739	16877739	+	Silent	SNP	G	G	A	rs185323430	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	60.0	34.0	63.0	0.0	0.566667	0	G|0.999;A|0.001	0.001	strong	.	MYO10	198	.	NM_012334	exon2	c.C99T	p.V33V	CCGGAAGACGACG	.	PASS	Atlas-SNP
ALG1	56052	hgsc.bcm.edu	37	16	5127460	5127460	+	Missense_Mutation	SNP	T	T	G	rs112668461	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	61.0	27.0	62.0	0.0	0.442623	0	T|0.982;G|0.018	0.018	strong	.	ALG1	35	.	NM_019109	exon5	c.T554G	p.F185C	AGTTCTTTGGGCG	.	PASS	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	37	16	31382470	31382470	+	Silent	SNP	A	A	G	rs138137251	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	25.0	55.0	0.0	0.520833	0	A|0.991;G|0.009	0.009	strong	.	ITGAX	198	.	NM_000887	exon15	c.A1776G	p.Q592Q	GGGTCAAGACCTC	.	PASS	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	37	9	131768786	131768786	+	Silent	SNP	G	G	A	rs150379581	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	53.0	108.0	0.0	0.486239	0	G|0.990;A|0.010	0.010	strong	.	NUP188	140	.	NM_015354	exon44	c.G5079A	p.T1693T	GAGCACGCTGCTG	.	PASS	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	37	2	189859312	189859312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	122.0	36.0	110.0	0.0	0.295082	0	.	.	none	COL3A1,NS,malignant_melanoma,-1,1	COL3A1	292	1	NM_000090	exon19	c.G1339A	p.G447S	CCACGTGGTGAAC	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112162854	112162854	+	Silent	SNP	T	T	C	rs2229992	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	119.0	119.0	98.0	0.0	1	0	A|0.002;C|0.475	0.475	strong	APC,colon,carcinoma,0,1	APC	4158	1	NM_001127510	exon13	c.T1458C	p.Y486Y	AATGTATGGGCTT	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9015351	9015351	+	Missense_Mutation	SNP	G	G	A	rs201449501	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	112.0	18.0	119.0	0.0	0.160714	0	G|0.998;A|0.002	0.002	weak	.	MUC16	4315	.	NM_024690	exon30	c.C38237T	p.P12746L	TACAGAGGGCCAA	.	PASS	Atlas-SNP
SPA17	53340	hgsc.bcm.edu	37	11	124564252	124564252	+	Silent	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	99.0	46.0	112.0	0.0	0.464646	0	.	.	none	SPA17,NS,malignant_melanoma,+2,1	SPA17	16	1	NM_017425	exon5	c.A366G	p.Q122Q	AATCCAAGCTGCC	.	PASS	Atlas-SNP
SEMA6B	10501	hgsc.bcm.edu	37	19	4550183	4550183	+	Missense_Mutation	SNP	G	G	A	rs142864702	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	131.0	66.0	117.0	0.0	0.503817	0	G|0.999;A|0.001	0.001	strong	SEMA6B,NS,carcinoma,+1,1	SEMA6B	51	1	NM_032108	exon12	c.C1223T	p.A408V	GGCACCGCCTCGT	.	PASS	Atlas-SNP
SPATA25	128497	hgsc.bcm.edu	37	20	44515322	44515322	+	Missense_Mutation	SNP	C	C	T	rs76638086	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	42.0	110.0	0.0	0.451613	0	C|0.997;T|0.003	0.003	strong	.	.	.	.	NM_080608	exon2	c.G518A	p.R173Q	TCTTCCCGAACTC	.	PASS	Atlas-SNP
HLA-DQB2	3120	hgsc.bcm.edu	37	6	32726756	32726756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	14.0	116.0	0.0	0.126126	0	.	.	none	.	HLA-DQB2	22	.	NM_001198858	exon3	c.T517C	p.S173P	TGAGGGAGGTGGA	.	PASS	Atlas-SNP
PRR5	55615	hgsc.bcm.edu	37	22	45075741	45075741	+	Missense_Mutation	SNP	C	C	T	rs74960825	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	101.0	47.0	105.0	0.0	0.465347	0	C|0.996;T|0.004	0.004	strong	.	PRR5	75	.	NM_001198721	exon2	c.C62T	p.P21L	AGATGCCGGCGCA	.	PASS	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	37	11	6559961	6559961	+	Silent	SNP	G	G	A	rs118078642	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	67.0	44.0	71.0	0.0	0.656716	0	G|0.997;A|0.003	0.003	strong	.	DNHD1	198	.	NM_144666	exon16	c.G3246A	p.E1082E	GGGGGAGTTTCGC	.	PASS	Atlas-SNP
HIST1H2AL	8332	hgsc.bcm.edu	37	6	27833378	27833378	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	101.0	49.0	108.0	0.0	0.485149	0	.	.	none	.	HIST1H2AL	14	.	NM_003511	exon1	c.C246T	p.R82R	CCCGCGCCACTTG	.	PASS	Atlas-SNP
SDHA	6389	hgsc.bcm.edu	37	5	256508	256508	+	Silent	SNP	C	C	T	rs3211499		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	102.0	7.0	93.0	0.0	0.0686275	0	.	.	weak	SDHA,NS,carcinoma,+2,1	SDHA	80	1	NM_004168	exon15	c.C1968T	p.T656T	TGCCACCGTCCCG	.	scavenged	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	37	18	60027236	60027236	+	Silent	SNP	C	C	T	rs12721430	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	160.0	114.0	145.0	0.0	0.7125	0	C|0.997;T|0.003	0.003	strong	.	TNFRSF11A	51	.	NM_001270951	exon6	c.C570T	p.S190S	GAAATCCGATGCG	.	PASS	Atlas-SNP
MRGPRX1	259249	hgsc.bcm.edu	37	11	18955515	18955515	+	Missense_Mutation	SNP	A	A	G	rs138263314	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	85.0	29.0	61.0	1.0	0.341176	0.0163934	A|0.980;G|0.020	0.020	strong	MRGPRX1,NS,carcinoma,+1,1	MRGPRX1	84	1	NM_147199	exon1	c.T817C	p.F273L	CGAAGAAGTAAAT	.	scavenged	Atlas-SNP
CCND1	595	hgsc.bcm.edu	37	11	69462802	69462802	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	35.0	73.0	0.0	0.486111	0	.	.	none	CCND1,NS,carcinoma,0,1	CCND1	107	1	NM_053056	exon4	c.G615A	p.A205A	GGCAGCGGGGAGC	.	PASS	Atlas-SNP
DNAJB6	10049	hgsc.bcm.edu	37	7	157202683	157202683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	28.0	13.0	17.0	0.0	0.464286	0	.	.	none	.	DNAJB6	39	.	NM_058246	exon9	c.G886A	p.A296T	CCCCTCGCGTCCG	.	PASS	Atlas-SNP
SLC12A9	56996	hgsc.bcm.edu	37	7	100454796	100454796	+	Missense_Mutation	SNP	G	G	A	rs143666254	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	21.0	36.0	0.0	0.477273	0	G|0.996;A|0.004	0.004	strong	.	SLC12A9	81	.	NM_001267812	exon5	c.G755A	p.G252D	ACTTGGGCGGTGA	.	PASS	Atlas-SNP
SEC14L5	9717	hgsc.bcm.edu	37	16	5061113	5061113	+	Silent	SNP	G	G	A	rs116849014	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	26.0	65.0	0.0	0.472727	0	G|0.990;A|0.010	0.010	strong	.	SEC14L5	79	.	NM_014692	exon15	c.G1818A	p.R606R	GACCCGGTGGCCC	.	PASS	Atlas-SNP
SPATA21	374955	hgsc.bcm.edu	37	1	16736327	16736327	+	Missense_Mutation	SNP	G	G	A	rs41269197	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	36.0	48.0	0.0	0.428571	0	G|0.960;A|0.040	0.040	strong	.	SPATA21	47	.	NM_198546	exon6	c.C356T	p.P119L	GGCACCGGGGTCA	.	PASS	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207170026	207170026	+	Silent	SNP	T	T	C	rs77622365	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	148.0	67.0	160.0	0.0	0.452703	0	T|0.979;C|0.021	0.021	strong	.	ZDBF2	531	.	NM_020923	exon5	c.T774C	p.N258N	ATCAAATAGGAAA	.	PASS	Atlas-SNP
DOLK	22845	hgsc.bcm.edu	37	9	131708710	131708710	+	Silent	SNP	G	G	A	rs148646968	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	74.0	36.0	70.0	0.0	0.486486	0	G|1.000;A|0.000	0.000	strong	DOLK,colon,carcinoma,-2,1	DOLK	39	1	NM_014908	exon1	c.C873T	p.L291L	CTGGAAGAGAAAC	.	PASS	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	37	5	127680130	127680130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	31.0	86.0	0.0	0.430556	0	.	.	none	.	FBN2	858	.	NM_001999	exon25	c.A3290C	p.K1097T	CGGCATTTGAAGC	.	PASS	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	37	12	936230	936230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	17.0	87.0	0.0	0.182796	0	.	.	none	.	WNK1	403	.	NM_001184985	exon3	c.A955T	p.M319L	AAAGTGATGAAGA	.	PASS	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	37	9	19352096	19352096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	94.0	19.0	79.0	0.0	0.202128	0	.	.	none	.	DENND4C	120	.	NM_017925	exon24	c.G4374A	p.M1458I	AGGCATGAAAGGG	.	PASS	Atlas-SNP
NFYC	4802	hgsc.bcm.edu	37	1	41232588	41232588	+	Splice_Site	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	69.0	5.0	63.0	0.0	0.0724638	0	.	.	none	.	NFYC	39	.	NM_001142588	exon9	c.829-2A>G	.	TTCTCAAGGGGCA	.	PASS	Atlas-SNP
NUDT9	53343	hgsc.bcm.edu	37	4	88344154	88344154	+	Missense_Mutation	SNP	C	C	A	rs146952902	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	40.0	11.0	40.0	0.0	0.275	0	C|0.997;A|0.003	0.003	strong	.	NUDT9	21	.	NM_001248011	exon1	c.C97A	p.Q33K	GGCATCCAGGCGT	.	PASS	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	37	4	85612823	85612823	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	25.0	69.0	0.0	0.342466	0	.	.	none	.	WDFY3	314	.	NM_014991	exon60	c.A9165G	p.A3055A	GAGGTCTGCATAG	.	PASS	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	37	2	29225463	29225463	+	Silent	SNP	C	C	T	rs370488483		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	78.0	32.0	80.0	0.0	0.410256	0	.	.	weak	.	FAM179A	106	.	NM_199280	exon5	c.C489T	p.A163A	CCGAGCCACCTCT	.	PASS	Atlas-SNP
SERPINB10	5273	hgsc.bcm.edu	37	18	61584726	61584726	+	Missense_Mutation	SNP	G	G	T	rs143009235	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	34.0	77.0	0.0	0.330097	0	G|0.993;T|0.007	0.007	strong	.	SERPINB10	53	.	NM_005024	exon2	c.G205T	p.D69Y	AAATGTGACCCTG	.	PASS	Atlas-SNP
ZBTB39	9880	hgsc.bcm.edu	37	12	57397250	57397250	+	Silent	SNP	G	G	C	rs145214115	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	44.0	104.0	0.0	0.473118	0	G|0.999;C|0.001	0.001	strong	.	ZBTB39	58	.	NM_014830	exon2	c.C1452G	p.V484V	GTCGCAGACACTG	.	PASS	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	37	3	50147061	50147061	+	Silent	SNP	G	G	A	rs116604207	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	193.0	69.0	167.0	0.0	0.357513	0	G|0.998;A|0.002	0.002	strong	.	RBM5	76	.	NM_005778	exon15	c.G1218A	p.A406A	CTCAGCGGCTGTA	.	PASS	Atlas-SNP
MCCC2	64087	hgsc.bcm.edu	37	5	70888804	70888804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	256.0	137.0	245.0	0.0	0.535156	0	.	.	none	.	MCCC2	47	.	NM_022132	exon2	c.G181A	p.E61K	CGAGTGGAGCATA	.	PASS	Atlas-SNP
TBX6	6911	hgsc.bcm.edu	37	16	30100401	30100401	+	Missense_Mutation	SNP	C	C	T	rs56098093	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	46.0	48.0	0.0	0.582278	0	C|0.997;T|0.003	0.003	strong	.	TBX6	29	.	NM_004608	exon4	c.G484A	p.G162S	CCTTGCCGCTGGG	.	PASS	Atlas-SNP
SLC22A18	5002	hgsc.bcm.edu	37	11	2929502	2929502	+	Missense_Mutation	SNP	G	G	A	rs143044180	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	21.0	59.0	0.0	0.388889	0	G|0.998;T|0.002	.	alt	SLC22A18,NS,carcinoma,0,1	SLC22A18	20	1	NM_002555	exon3	c.G184A	p.G62S	GCCTTCGGCTACC	.	PASS	Atlas-SNP
FCRLB	127943	hgsc.bcm.edu	37	1	161697068	161697068	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	4.0	60.0	0.0	0.0615385	0	.	.	none	.	FCRLB	35	.	NM_001002901	exon6	c.C897T	p.A299A	CACCGCCCCAGCT	.	PASS	Atlas-SNP
TIAF1	9220	hgsc.bcm.edu	37	17	27401176	27401176	+	Silent	SNP	G	G	C	rs1049848	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	27.0	48.0	0.0	0.490909	0	G|0.988;C|0.012	0.012	strong	.	TIAF1	9	.	NM_004740	exon1	c.C42G	p.L14L	TGCACAGAGAAAG	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	37	14	20871901	20871901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	34.0	64.0	0.0	0.618182	0	.	.	none	TEP1,NS,carcinoma,-1,1	TEP1	224	1	NM_007110	exon6	c.G1175A	p.R392H	GGCCGGCGGGGGT	.	PASS	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	37	11	8671296	8671296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	37.0	18.0	51.0	0.0	0.486486	0	.	.	none	.	TRIM66	45	.	NM_014818	exon3	c.G148A	p.G50R	GAGATCCCTTCTG	.	PASS	Atlas-SNP
STAT3	6774	hgsc.bcm.edu	37	17	40498635	40498635	+	Silent	SNP	C	C	T	rs146184566	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	100.0	42.0	128.0	0.0	0.42	0	C|0.999;T|0.001	0.001	strong	STAT3,NS,carcinoma,0,1	STAT3	268	1	NM_003150	exon3	c.G225A	p.S75S	AACATTCGACTCT	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	37	20	62193733	62193733	+	Missense_Mutation	SNP	C	C	T	rs370768380		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	23.0	53.0	0.0	0.479167	0	.	.	weak	PRIC285,colon,carcinoma,0,1	.	.	1	NM_001037335	exon10	c.G6305A	p.R2102H	TCCTTGCGGCTGG	.	PASS	Atlas-SNP
DLX5	1749	hgsc.bcm.edu	37	7	96653684	96653684	+	Silent	SNP	G	G	C	rs61753628	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	119.0	61.0	120.0	1.0	0.512605	0.00833333	G|0.994;C|0.006	0.006	strong	DLX5,caecum,carcinoma,0,1	DLX5	52	1	NM_005221	exon1	c.C252G	p.A84A	GCTCCCGGCGGAG	.	scavenged	Atlas-SNP
TMC7	79905	hgsc.bcm.edu	37	16	19056695	19056695	+	Silent	SNP	C	C	T	rs137989665	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	156.0	69.0	172.0	0.0	0.442308	0	C|1.000;T|0.000	0.000	strong	.	TMC7	75	.	NM_024847	exon11	c.C1488T	p.Y496Y	AATGTACAAGCTG	.	PASS	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	37	4	8229378	8229378	+	Silent	SNP	C	C	A	rs139890356	bycluster;by1000genomes;alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	38.0	21.0	24.0	0.0	0.552632	0	C|0.996;T|0.004	.	alt	.	SH3TC1	105	.	NM_018986	exon12	c.C1957A	p.R653R	GCGCTGCGGCGGG	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112176559	112176559	+	Silent	SNP	T	T	G	rs866006	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	111.0	95.0	0.0	1	0	T|0.384;G|0.616	0.616	strong	.	APC	4158	.	NM_001127510	exon17	c.T5268G	p.S1756S	TGCGTCTTCTTCT	.	PASS	Atlas-SNP
ADCY6	112	hgsc.bcm.edu	37	12	49162439	49162439	+	Missense_Mutation	SNP	C	C	G	rs200204618	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	96.0	51.0	92.0	0.0	0.53125	0	.	.	weak	.	ADCY6	81	.	NM_015270	exon21	c.G3442C	p.V1148L	TGACCACCCCTCG	.	PASS	Atlas-SNP
NOD2	64127	hgsc.bcm.edu	37	16	50753892	50753892	+	Missense_Mutation	SNP	G	G	A	rs201831159	by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	67.0	41.0	51.0	0.0	0.61194	0	G|1.000;A|0.000	0.000	strong	.	NOD2	118	.	NM_022162	exon7	c.G2687A	p.R896Q	GGCTCCGAGGCAA	.	PASS	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134340444	134340444	+	Missense_Mutation	SNP	A	A	G	rs201633009	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	70.0	37.0	63.0	0.0	0.528571	0	A|0.994;G|0.006	0.006	strong	.	PRRC2B	266	.	NM_013318	exon11	c.A1699G	p.N567D	CAGGAAAACGGCC	.	PASS	Atlas-SNP
SPPL2A	84888	hgsc.bcm.edu	37	15	51041909	51041909	+	Missense_Mutation	SNP	C	C	T	rs145832874	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	88.0	46.0	73.0	0.0	0.522727	0	C|0.998;T|0.002	0.002	strong	.	SPPL2A	26	.	NM_032802	exon2	c.G101A	p.G34E	CCATTTCCAGACG	.	PASS	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	37	1	218520315	218520315	+	Missense_Mutation	SNP	G	G	A	rs10482721	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	116.0	56.0	99.0	0.0	0.482759	0	G|0.996;A|0.004	0.004	strong	.	TGFB2	102	.	NM_003238	exon1	c.G272A	p.R91H	GCGAGCGCGAGAG	.	PASS	Atlas-SNP
BRAF	673	hgsc.bcm.edu	37	7	140449150	140449150	+	Silent	SNP	T	T	C	rs9648696	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	141.0	84.0	121.0	0.0	0.595745	0	T|0.696;C|0.304	0.304	strong	.	BRAF	36346	.	NM_004333	exon16	c.A1929G	p.G643G	AACAATTCCAAAT	.	PASS	Atlas-SNP
ZNF324	25799	hgsc.bcm.edu	37	19	58983321	58983321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	36.0	14.0	27.0	0.0	0.388889	0	.	.	none	ZNF324,NS,carcinoma,-2,1	ZNF324	46	1	NM_014347	exon4	c.C1462T	p.R488C	TGTGGCCGCGCCT	.	PASS	Atlas-SNP
SDR42E1	93517	hgsc.bcm.edu	37	16	82033022	82033022	+	Silent	SNP	A	A	G	rs11861598	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	51.0	31.0	56.0	0.0	0.607843	0	A|0.956;G|0.044	0.044	strong	.	SDR42E1	26	.	NM_145168	exon3	c.T876C	p.F292F	TGTTAGAAAAGCA	.	PASS	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	37	19	55451256	55451256	+	Missense_Mutation	SNP	G	G	T	rs79513034	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	37.0	92.0	0.0	0.402174	0	G|0.989;T|0.011	0.011	strong	.	NLRP7	411	.	NM_001127255	exon4	c.C931A	p.L311I	CCAGGAGCTGGAG	.	PASS	Atlas-SNP
TCEA3	6920	hgsc.bcm.edu	37	1	23720501	23720501	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	26.0	92.0	0.0	0.238532	0	.	.	none	.	TCEA3	20	.	NM_003196	exon8	c.G690A	p.T230T	CATGTCCGTGCTC	.	PASS	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	37	21	47537804	47537804	+	Missense_Mutation	SNP	C	C	G	rs199929757	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	31.0	48.0	0.0	0.688889	0	C|0.996;G|0.005	0.005	strong	.	COL6A2	351	.	NM_058175	exon12	c.C1070G	p.P357R	GTTACCCGGGGGA	.	PASS	Atlas-SNP
PPIE	10450	hgsc.bcm.edu	37	1	40207580	40207580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	182.0	81.0	149.0	0.0	0.445055	0	.	.	none	.	PPIE	33	.	NM_006112	exon4	c.C188T	p.A63V	CAGCAGCTATCGA	.	PASS	Atlas-SNP
SPATA25	128497	hgsc.bcm.edu	37	20	44515244	44515244	+	Missense_Mutation	SNP	C	C	T	rs146744825	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	41.0	72.0	0.0	0.488095	0	C|0.994;T|0.006	0.006	strong	.	.	.	.	NM_080608	exon2	c.G596A	p.R199Q	TCCCACCGCGCCC	.	PASS	Atlas-SNP
SLC30A4	7782	hgsc.bcm.edu	37	15	45778828	45778828	+	Silent	SNP	G	G	A	rs145466606	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	25.0	58.0	0.0	0.454545	0	G|0.999;A|0.001	0.001	strong	.	SLC30A4	25	.	NM_013309	exon7	c.C1116T	p.A372A	AACTATGGCAGTA	.	PASS	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	37	15	72170400	72170400	+	Missense_Mutation	SNP	G	G	A	rs148435644	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	118.0	47.0	141.0	0.0	0.398305	0	G|0.977;A|0.023	0.023	strong	.	MYO9A	203	.	NM_006901	exon31	c.C5912T	p.S1971L	CAATCTGAAGTCT	.	PASS	Atlas-SNP
BEND7	222389	hgsc.bcm.edu	37	10	13481466	13481466	+	Silent	SNP	C	C	T	rs76298779	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	66.0	30.0	60.0	0.0	0.454545	0	C|0.965;T|0.035	0.035	strong	.	BEND7	85	.	NM_152751	exon9	c.G1113A	p.P371P	CCCACCCGGCAGA	.	PASS	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49689642	49689642	+	Missense_Mutation	SNP	C	C	T	rs150021639	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	154.0	87.0	105.0	0.0	0.564935	0	C|0.987;T|0.013	0.013	strong	.	BSN	272	.	NM_003458	exon5	c.C2653T	p.P885S	CCTGAGCCTAGCC	.	PASS	Atlas-SNP
POMC	5443	hgsc.bcm.edu	37	2	25384113	25384113	+	Missense_Mutation	SNP	T	T	C	rs80326661	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	58.0	29.0	25.0	1.0	0.5	0.04	T|0.996;C|0.004	0.004	strong	POMC,colon,carcinoma,-1,1	POMC	33	1	NM_001035256	exon4	c.A641G	p.E214G	TTCTTCTCGGCCG	.	scavenged	Atlas-SNP
FLNA	2316	hgsc.bcm.edu	37	X	153594535	153594535	+	Missense_Mutation	SNP	G	G	A	rs36051194	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	56.0	52.0	52.0	0.0	0.928571	0	G|0.995;A|0.005	0.005	strong	.	FLNA	373	.	NM_001456	exon9	c.C1286T	p.T429M	TCTACCGTGCCCT	.	PASS	Atlas-SNP
KY	339855	hgsc.bcm.edu	37	3	134369767	134369767	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	190.0	37.0	107.0	0.0	0.194737	0	.	.	none	.	KY	92	.	NM_178554	exon1	c.C36T	p.I12I	CATGTCGATAGAT	.	PASS	Atlas-SNP
USP4	7375	hgsc.bcm.edu	37	3	49321424	49321424	+	Missense_Mutation	SNP	T	T	C	rs41290700	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	147.0	54.0	114.0	0.0	0.367347	0	T|0.995;C|0.005	0.005	strong	.	USP4	72	.	NM_003363	exon19	c.A2536G	p.I846V	ACCTGATTGGGAA	.	PASS	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	37	5	26885964	26885964	+	Silent	SNP	T	T	G	rs35328154	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	60.0	26.0	72.0	0.0	0.433333	0	T|0.992;G|0.008	0.008	strong	.	CDH9	305	.	NM_016279	exon11	c.A1641C	p.A547A	GATTCCTGCTGTA	.	PASS	Atlas-SNP
UGT2B17	7367	hgsc.bcm.edu	37	4	69433479	69433479	+	Missense_Mutation	SNP	C	C	G	rs145791375	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	127.0	59.0	0.0	0.0	0.464567	.	C|0.999;G|0.001	0.001	strong	.	UGT2B17	34	.	NM_001077	exon1	c.G724C	p.G242R	ACTTACCTAGAAC	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112176756	112176756	+	Missense_Mutation	SNP	T	T	A	rs459552	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	86.0	84.0	71.0	0.0	0.976744	0	T|0.151;A|0.849	0.849	strong	.	APC	4158	.	NM_001127510	exon17	c.T5465A	p.V1822D	CCAAGGTCTTCAA	.	PASS	Atlas-SNP
POLR1B	84172	hgsc.bcm.edu	37	2	113333238	113333238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	77.0	4.0	79.0	0.0	0.0519481	0	.	.	none	.	POLR1B	95	.	NM_019014	exon15	c.T3340C	p.Y1114H	GTGCCTTATGTTT	.	PASS	Atlas-SNP
LCP2	3937	hgsc.bcm.edu	37	5	169675739	169675739	+	Missense_Mutation	SNP	A	A	G	rs187889192	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	159.0	83.0	157.0	0.0	0.522013	0	A|0.999;G|0.001	0.001	strong	.	LCP2	133	.	NM_005565	exon21	c.T1564C	p.Y522H	ACTGGTATCTGGA	.	PASS	Atlas-SNP
GPD1L	23171	hgsc.bcm.edu	37	3	32181723	32181723	+	Missense_Mutation	SNP	A	A	G	rs72552293	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	110.0	42.0	92.0	0.0	0.381818	0	A|0.998;G|0.002	0.002	strong	.	GPD1L	25	.	NM_015141	exon4	c.A370G	p.I124V	TAGGGCATAGACG	.	PASS	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	37	10	69902800	69902800	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	33.0	58.0	0.0	0.515625	0	.	.	none	.	MYPN	189	.	NM_032578	exon3	c.A1006T	p.T336S	GAGGACACAGGAC	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241702599	241702599	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	52.0	16.0	37.0	0.0	0.307692	0	.	.	none	.	KIF1A	152	.	NM_001244008	exon21	c.C1933T	p.Q645X	TCTCCTGCTTCAT	.	PASS	Atlas-SNP
PAK6	56924	hgsc.bcm.edu	37	15	40564441	40564441	+	Missense_Mutation	SNP	G	G	A	rs150100570	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	39.0	64.0	0.0	0.481481	0	G|0.999;A|0.001	0.001	strong	PAK6,NS,adenocarcinoma,+1,1	PAK6	49	1	NM_001128629	exon5	c.G875A	p.R292Q	CTTTCCGACCGCC	.	PASS	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	37	6	35048829	35048829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	100.0	27.0	80.0	0.0	0.27	0	.	.	none	.	ANKS1A	123	.	NM_015245	exon17	c.G2603A	p.G868E	GCACTGGGCGGTC	.	PASS	Atlas-SNP
DISP2	85455	hgsc.bcm.edu	37	15	40656724	40656724	+	Silent	SNP	C	C	T	rs72733418	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	70.0	43.0	40.0	0.0	0.614286	0	C|0.987;T|0.013	0.013	strong	.	DISP2	86	.	NM_033510	exon4	c.C582T	p.P194P	GCTGCCCGACTTC	.	PASS	Atlas-SNP
SLC7A5	8140	hgsc.bcm.edu	37	16	87885369	87885369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	171.0	48.0	175.0	0.0	0.280702	0	.	.	none	.	SLC7A5	28	.	NM_003486	exon2	c.G625A	p.A209T	TCAGGGCCAGGGC	.	PASS	Atlas-SNP
DCPS	28960	hgsc.bcm.edu	37	11	126215507	126215507	+	Silent	SNP	G	G	A	rs139354381	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	21.0	10.0	23.0	0.0	0.47619	0	G|0.995;A|0.005	0.005	strong	.	DCPS	33	.	NM_014026	exon6	c.G1013A	p.X338X	AAAGCTGAATTAA	.	PASS	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	37	X	10085227	10085227	+	Silent	SNP	T	T	C	rs7058143	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	39.0	39.0	49.0	0.0	1	0	0|0.004;C|0.221	0.221	strong	.	WWC3	142	.	NM_015691	exon11	c.T1128C	p.R376R	CAGCCGTGGGTCT	.	PASS	Atlas-SNP
TPO	7173	hgsc.bcm.edu	37	2	1426844	1426844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	58.0	37.0	75.0	0.0	0.637931	0	.	.	none	.	TPO	224	.	NM_175719	exon3	c.G122T	p.S41I	TCTCTAGCGTCTT	.	PASS	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	37	8	123964819	123964819	+	Missense_Mutation	SNP	G	G	A	rs9649951	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	83.0	36.0	69.0	0.0	0.433735	0	G|0.974;A|0.026	0.026	strong	.	ZHX2	106	.	NM_014943	exon3	c.G1069A	p.V357M	ACAAAGGTGACGC	.	PASS	Atlas-SNP
PSMD7	5713	hgsc.bcm.edu	37	16	74334016	74334016	+	Silent	SNP	C	C	T	rs140080000	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	37.0	84.0	0.0	0.45679	0	C|0.999;T|0.001	0.001	strong	.	PSMD7	29	.	NM_002811	exon2	c.C78T	p.I26I	CAGAATCGGCAAG	.	PASS	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	37	9	134501410	134501410	+	Missense_Mutation	SNP	C	C	T	rs200547421	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	48.0	118.0	0.0	0.432432	0	C|0.993;T|0.007	0.007	strong	.	RAPGEF1	126	.	NM_198679	exon10	c.G1604A	p.G535D	GAGGAACCTCCAT	.	PASS	Atlas-SNP
FOXP1	27086	hgsc.bcm.edu	37	3	71096114	71096114	+	Missense_Mutation	SNP	G	G	C	rs146606219	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	161.0	90.0	124.0	0.0	0.559006	0	G|0.998;C|0.002	0.002	strong	FOXP1,NS,carcinoma,0,1	FOXP1	104	1	NM_001244815	exon5	c.C649G	p.P217A	GAAGGGGAAGGGC	.	PASS	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	37	14	76232469	76232469	+	Silent	SNP	C	C	T	rs61741261	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	47.0	22.0	61.0	0.0	0.468085	0	C|0.998;T|0.002	0.002	strong	.	TTLL5	102	.	NM_015072	exon20	c.C1773T	p.V591V	AGAAGTCGCATTA	.	PASS	Atlas-SNP
LZIC	84328	hgsc.bcm.edu	37	1	9995633	9995633	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	98.0	5.0	100.0	0.0	0.0510204	0	.	.	none	.	LZIC	11	.	NM_032368	exon3	c.C154T	p.Q52X	TTAGTTGCTCCAG	.	PASS	Atlas-SNP
TAF6	6878	hgsc.bcm.edu	37	7	99711386	99711386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	52.0	8.0	52.0	0.0	0.153846	0	.	.	none	.	TAF6	55	.	NM_001190415	exon4	c.T361G	p.Y121D	AGCCATAGAGTGG	.	PASS	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2983886	2983886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	251.0	36.0	178.0	0.0	0.143426	0	.	.	none	CARD11,colon,carcinoma,-1,6	CARD11	339	6	NM_032415	exon5	c.A644C	p.K215T	ATGTTCTTCTCCT	.	PASS	Atlas-SNP
THOC1	9984	hgsc.bcm.edu	37	18	264039	264039	+	Silent	SNP	C	C	A	rs376944925		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	179.0	62.0	162.0	0.0	0.346369	0	.	.	weak	.	THOC1	43	.	NM_005131	exon4	c.G243T	p.G81G	TACTCCCCCAATA	.	PASS	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	37	19	31039256	31039256	+	Silent	SNP	C	C	T	rs111707808	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	28.0	43.0	1.0	0.636364	0.0232558	C|0.970;T|0.030	0.030	strong	ZNF536,colon,carcinoma,+1,1	ZNF536	424	1	NM_014717	exon4	c.C2730T	p.N910N	GAGCAACGGTGTG	.	scavenged	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22214040	22214040	+	Silent	SNP	G	G	A	rs41310388	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	129.0	58.0	145.0	0.0	0.449612	0	G|0.989;A|0.011	0.011	strong	HSPG2,NS,carcinoma,0,1	HSPG2	311	1	NM_005529	exon8	c.C831T	p.P277P	GGAACCGGGAAGC	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	37	18	21496533	21496533	+	Silent	SNP	C	C	T	rs61751706	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	59.0	63.0	0.0	0.572816	0	C|0.995;T|0.005	0.005	strong	.	LAMA3	397	.	NM_198129	exon60	c.C7797T	p.D2599D	GTCAGACAAAAAT	.	PASS	Atlas-SNP
GSG2	83903	hgsc.bcm.edu	37	17	3628759	3628759	+	Missense_Mutation	SNP	A	A	G	rs146480185		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	137.0	65.0	90.0	0.0	0.474453	0	A|1.000;G|0.000	0.000	weak	.	GSG2	48	.	NM_031965	exon1	c.A1530G	p.I510M	AGCCATAAAAATC	.	PASS	Atlas-SNP
FDFT1	2222	hgsc.bcm.edu	37	8	11667253	11667253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	123.0	55.0	99.0	0.0	0.447154	0	.	.	none	.	FDFT1	25	.	NM_004462	exon3	c.A275G	p.K92R	TGGAAAAGAAGGT	.	PASS	Atlas-SNP
TRMT1	55621	hgsc.bcm.edu	37	19	13218417	13218417	+	Silent	SNP	T	T	C	rs148858467	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	21.0	75.0	0.0	0.328125	0	T|0.995;C|0.005	0.005	strong	.	TRMT1	31	.	NM_001136035	exon14	c.A1554G	p.P518P	GAACGCTGGGCTA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179455352	179455352	+	Missense_Mutation	SNP	C	C	T	rs141973925	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	344.0	179.0	330.0	0.0	0.520349	0	C|0.999;T|0.001	0.001	strong	TTN_ENST00000359218,NS,carcinoma,+1,5	TTN	18412	5	NM_001267550	exon304	c.G61100A	p.R20367Q	ATGGGCCGGCAAG	.	PASS	Atlas-SNP
ZNF268	10795	hgsc.bcm.edu	37	12	133778887	133778887	+	Missense_Mutation	SNP	G	G	A	rs75772856	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	18.0	86.0	0.0	0.333333	0	G|0.988;A|0.012	0.012	strong	.	ZNF268	71	.	NM_001165885	exon5	c.G488A	p.R163H	TGGCACGCATGGA	.	PASS	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	37	5	55251889	55251889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	141.0	61.0	119.0	0.0	0.432624	0	.	.	none	.	IL6ST	75	.	NM_002184	exon10	c.G1231A	p.A411T	CAGCTGCATCTGA	.	PASS	Atlas-SNP
ATM	472	hgsc.bcm.edu	37	11	108163487	108163487	+	Silent	SNP	C	C	T	rs1800889	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	139.0	69.0	122.0	0.0	0.496403	0	C|0.972;T|0.028	0.028	strong	.	ATM	1657	.	NM_000051	exon30	c.C4578T	p.P1526P	TATACCCCTTGTG	.	PASS	Atlas-SNP
TTC39C	125488	hgsc.bcm.edu	37	18	21662974	21662974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	163.0	34.0	135.0	0.0	0.208589	0	.	.	none	.	TTC39C	83	.	NM_001135993	exon6	c.C913T	p.L305F	ATTCTCCTTAAAA	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57579390	57579390	+	Silent	SNP	C	C	T	rs149556819	byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	50.0	30.0	24.0	0.0	0.6	0	C|0.999;T|0.001	0.001	strong	.	LRP1	428	.	NM_002332	exon41	c.C6540T	p.C2180C	GGCCTGCGCCTGT	.	PASS	Atlas-SNP
LRRFIP1	9208	hgsc.bcm.edu	37	2	238662005	238662005	+	Silent	SNP	T	T	C	rs200278632	by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	45.0	12.0	50.0	0.0	0.266667	0	T|1.000;C|0.000	0.000	strong	.	LRRFIP1	171	.	NM_001137550	exon15	c.T921C	p.A307A	CAATGCTCAGCTA	.	PASS	Atlas-SNP
PHYHIPL	84457	hgsc.bcm.edu	37	10	61005204	61005204	+	Silent	SNP	C	C	T	rs138490289	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	44.0	99.0	0.0	0.40367	0	C|0.998;T|0.002	0.002	strong	.	PHYHIPL	44	.	NM_032439	exon5	c.C984T	p.V328V	GGATGTCATTTTA	.	PASS	Atlas-SNP
SPDYE1	285955	hgsc.bcm.edu	37	7	44046900	44046900	+	Silent	SNP	G	G	A	rs147853765	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	235.0	55.0	144.0	0.0	0.234043	0	G|0.984;A|0.016	0.016	strong	.	SPDYE1	29	.	NM_175064	exon5	c.G666A	p.E222E	CGACGAGGACTCC	.	PASS	Atlas-SNP
FAM219A	203259	hgsc.bcm.edu	37	9	34401049	34401049	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	4.0	37.0	0.0	0.0833333	0	.	.	none	.	FAM219A	3	.	NM_001184940	exon6	c.G471A	p.E157E	TAGGTCCTCGTCG	.	PASS	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	37	2	207564562	207564562	+	Missense_Mutation	SNP	T	T	A	rs112735024	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	166.0	81.0	139.0	0.0	0.487952	0	T|0.997;A|0.003	0.003	strong	.	DYTN	168	.	NM_001093730	exon7	c.A608T	p.E203V	GGAGGCTCAGATT	.	PASS	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	37	19	16973724	16973724	+	Silent	SNP	G	G	A	rs143287291	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	188.0	87.0	157.0	0.0	0.462766	0	G|0.992;A|0.008	0.008	strong	SIN3B,NS,malignant_melanoma,+1,1	SIN3B	90	1	NM_015260	exon10	c.G1296A	p.S432S	GGGTTCGTGGACA	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49445949	49445949	+	Missense_Mutation	SNP	G	G	T	rs367925817		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	97.0	49.0	86.0	0.0	0.505155	0	.	.	weak	.	MLL2	1173	.	NM_003482	exon10	c.C1517A	p.P506Q	TCAGGTGGGGGAG	.	PASS	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	37	19	52000192	52000192	+	Missense_Mutation	SNP	A	A	G	rs144032115	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	132.0	15.0	95.0	0.0	0.113636	0	A|1.000;G|0.000	0.000	strong	SIGLEC12,NS,haematopoietic_neoplasm,0,1	SIGLEC12	243	1	NM_053003	exon7	c.T1541C	p.V514A	ACGCCCACTGCTG	.	PASS	Atlas-SNP
SCUBE2	57758	hgsc.bcm.edu	37	11	9082068	9082068	+	Missense_Mutation	SNP	G	G	A	rs72547298	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	52.0	26.0	41.0	0.0	0.5	0	G|0.994;A|0.006	0.006	strong	.	SCUBE2	102	.	NM_001170690	exon8	c.C854T	p.T285M	GCACACGTTTCTG	.	PASS	Atlas-SNP
NAA25	80018	hgsc.bcm.edu	37	12	112486213	112486213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	4.0	49.0	0.0	0.0701754	0	.	.	none	.	NAA25	105	.	NM_024953	exon16	c.G1763A	p.G588D	AATGCACCATATT	.	PASS	Atlas-SNP
OTUD7A	161725	hgsc.bcm.edu	37	15	31776837	31776837	+	Missense_Mutation	SNP	C	C	G	rs76704217	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	46.0	81.0	0.0	0.547619	0	C|0.970;G|0.030	0.030	strong	.	OTUD7A	89	.	NM_130901	exon11	c.G1441C	p.V481L	TGCACACCGAATC	.	PASS	Atlas-SNP
KIAA1958	158405	hgsc.bcm.edu	37	9	115337154	115337154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	102.0	5.0	99.0	0.0	0.0490196	0	.	.	none	KIAA1958_ENST00000374244,NS,carcinoma,+1,3	KIAA1958	52	3	NM_133465	exon2	c.A794G	p.D265G	AGCTAGACCCACA	.	PASS	Atlas-SNP
KCNIP4	80333	hgsc.bcm.edu	37	4	20751343	20751343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	4.0	53.0	0.0	0.0833333	0	.	.	none	.	KCNIP4	85	.	NM_025221	exon4	c.A311G	p.Y104C	TGTGCATATGTTG	.	PASS	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	37	12	119568596	119568596	+	Missense_Mutation	SNP	G	G	A	rs7297606	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	26.0	14.0	18.0	0.0	0.538462	0	G|0.908;A|0.092	0.092	strong	.	SRRM4	131	.	NM_194286	exon8	c.G728A	p.S243N	CGCCCAGTCAACC	.	PASS	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	37	4	184207192	184207192	+	Missense_Mutation	SNP	C	C	T	rs148189381		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	80.0	40.0	52.0	0.0	0.5	0	C|1.000;T|0.000	0.000	weak	.	WWC2	78	.	NM_024949	exon20	c.C3121T	p.R1041C	GAACGCCGCAGTT	.	PASS	Atlas-SNP
GRAP2	9402	hgsc.bcm.edu	37	22	40366924	40366924	+	Missense_Mutation	SNP	C	C	T	rs149718626	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	39.0	18.0	61.0	0.0	0.461538	0	C|1.000;T|0.000	0.000	strong	.	GRAP2	29	.	NM_004810	exon8	c.C829T	p.R277W	TGGGCCCGGGCGC	.	PASS	Atlas-SNP
PDCD4	27250	hgsc.bcm.edu	37	10	112654238	112654238	+	Silent	SNP	C	C	T	rs41292602	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	30.0	15.0	31.0	0.0	0.5	0	C|0.997;T|0.003	0.003	strong	.	PDCD4	39	.	NM_014456	exon10	c.C1167T	p.S389S	AAAGTCCCTTTGG	.	PASS	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	37	17	18907198	18907198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	116.0	60.0	110.0	0.0	0.517241	0	.	.	none	.	FAM83G	51	.	NM_001039999	exon2	c.G157A	p.E53K	TGTTCTCCCGCTT	.	PASS	Atlas-SNP
HBP1	26959	hgsc.bcm.edu	37	7	106836344	106836344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	109.0	55.0	102.0	0.0	0.504587	0	.	.	none	.	HBP1	31	.	NM_001244262	exon9	c.G1163A	p.R388H	AGCGTCGTGCATC	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112176325	112176325	+	Silent	SNP	G	G	A	rs42427	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	80.0	80.0	107.0	0.0	1	0	G|0.379;A|0.621	0.621	strong	.	APC	4158	.	NM_001127510	exon17	c.G5034A	p.G1678G	AGGAGGGGCACAG	.	PASS	Atlas-SNP
NEK3	4752	hgsc.bcm.edu	37	13	52707924	52707924	+	Missense_Mutation	SNP	A	A	C	rs200805375	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	30.0	104.0	0.0	0.416667	0	A|0.999;C|0.001	0.001	weak	.	NEK3	41	.	NM_002498	exon15	c.T1337G	p.L446R	TCAGACAGGGGGC	.	PASS	Atlas-SNP
CDC45	8318	hgsc.bcm.edu	37	22	19482035	19482035	+	Missense_Mutation	SNP	C	C	G	rs151216373	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	32.0	10.0	49.0	0.0	0.3125	0	C|0.993;G|0.007	0.007	strong	.	CDC45	48	.	NM_001178010	exon7	c.C548G	p.S183C	GTGGCTCTGGGAG	.	PASS	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	37	8	9584176	9584176	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	41.0	71.0	0.0	0.488095	0	.	.	none	.	TNKS	198	.	NM_003747	exon13	c.T1947C	p.D649D	TTCTGATGTTGAT	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179453429	179453429	+	Missense_Mutation	SNP	G	G	A	rs72646850	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	208.0	119.0	195.0	0.0	0.572115	0	G|0.988;A|0.012	0.012	strong	.	TTN	18412	.	NM_001267550	exon304	c.C63023T	p.T21008I	CATCGTGTTGAAT	.	PASS	Atlas-SNP
TSPYL6	388951	hgsc.bcm.edu	37	2	54482271	54482271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	47.0	106.0	0.0	0.51087	0	.	.	none	.	TSPYL6	54	.	NM_001003937	exon1	c.A1018G	p.I340V	TATGAATGAAGGA	.	PASS	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	37	19	55451258	55451258	+	Missense_Mutation	SNP	T	T	C	rs77812009	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	92.0	38.0	92.0	0.0	0.413043	0	T|0.989;C|0.011	0.011	strong	NLRP7_ENST00000328092,NS,lymphoid_neoplasm,+1,2	NLRP7	411	2	NM_001127255	exon4	c.A929G	p.Q310R	AGGAGCTGGAGGT	.	PASS	Atlas-SNP
C5AR2	27202	hgsc.bcm.edu	37	19	47844383	47844383	+	Silent	SNP	G	G	T	rs373920189	alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	33.0	17.0	26.0	0.0	0.515152	0	.	.	alt	.	.	.	.	NM_001271750	exon2	c.G327T	p.A109A	TCGGGCGCTGCCC	.	PASS	Atlas-SNP
FHDC1	85462	hgsc.bcm.edu	37	4	153886104	153886104	+	Silent	SNP	G	G	A	rs2018007	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	330.0	166.0	383.0	1.0	0.50303	0.00261097	G|0.973;A|0.027	0.027	strong	.	FHDC1	102	.	NM_033393	exon8	c.G1077A	p.L359L	AAAATTGCATCAT	.	PASS	Atlas-SNP
KDM2B	84678	hgsc.bcm.edu	37	12	121877738	121877738	+	Missense_Mutation	SNP	C	C	T	rs200642027	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	33.0	67.0	0.0	0.452055	0	.	.	weak	.	KDM2B	218	.	NM_032590	exon22	c.G3751A	p.V1251I	CGGTGACGTGGTT	.	PASS	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	37	6	33391270	33391270	+	Silent	SNP	T	T	C	rs142359891	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	104.0	52.0	89.0	0.0	0.5	0	T|0.993;C|0.007	0.007	strong	.	SYNGAP1	202	.	NM_006772	exon2	c.T84C	p.S28S	ACCCTCTATGCAC	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	37	11	5364295	5364295	+	Missense_Mutation	SNP	C	C	T	rs12273630	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	25.0	49.0	0.0	0.581395	0	C|0.888;T|0.112	0.112	strong	.	OR51B5	60	.	NM_001005567	exon5	c.G460A	p.V154I	GAACAACGGATAC	.	PASS	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	37	14	102916966	102916966	+	Missense_Mutation	SNP	C	C	A	rs139247564	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	170.0	72.0	169.0	0.0	0.423529	0	C|0.999;A|0.001	0.001	weak	.	TECPR2	114	.	NM_001172631	exon15	c.C3386A	p.S1129Y	TGGCTTCTGCAGC	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57592067	57592067	+	Silent	SNP	G	G	A	rs143423493	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	26.0	47.0	1.0	0.472727	0.0212766	G|0.996;A|0.004	0.004	strong	LRP1,colon,carcinoma,+2,1	LRP1	428	1	NM_002332	exon59	c.G9411A	p.T3137T	TCGGACGGTGCTG	.	scavenged	Atlas-SNP
CNR1	1268	hgsc.bcm.edu	37	6	88854166	88854166	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	68.0	34.0	64.0	0.0	0.5	0	.	.	none	.	CNR1	91	.	NM_001160258	exon4	c.G828A	p.L276L	GAACATCAGGTAG	.	PASS	Atlas-SNP
WDR41	55255	hgsc.bcm.edu	37	5	76728996	76728996	+	Silent	SNP	T	T	C	rs72769029	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	201.0	101.0	135.0	0.0	0.502488	0	T|0.979;C|0.021	0.021	strong	.	WDR41	29	.	NM_018268	exon13	c.A1344G	p.K448K	CTCTAATTTTTGA	.	PASS	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	37	6	106554343	106554343	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	13.0	54.0	0.0	0.22807	0	.	.	none	.	PRDM1	195	.	NM_001198	exon6	c.T1871A	p.V624E	ACCTGGTACACAC	.	PASS	Atlas-SNP
ACTN2	88	hgsc.bcm.edu	37	1	236908053	236908053	+	Silent	SNP	C	C	T	rs34827377	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	110.0	59.0	100.0	0.0	0.536364	0	C|0.998;T|0.002	0.002	strong	.	ACTN2	191	.	NM_001103	exon12	c.C1383T	p.I461I	GCAGATCGCAGCC	.	PASS	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	37	2	11758536	11758536	+	Missense_Mutation	SNP	C	C	A	rs61741332	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	86.0	43.0	84.0	0.0	0.5	0	C|0.989;A|0.011	0.011	strong	.	GREB1	308	.	NM_014668	exon22	c.C3535A	p.P1179T	CAGAGGCCCCGGG	.	PASS	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824956	20824956	+	Silent	SNP	C	C	G	rs201180283		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	7.0	7.0	2.0	0.0	1	0	.	.	weak	.	SP8	43	.	NM_182700	exon2	c.G480C	p.G160G	GCCGCCCCCGCCG	.	PASS	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53103370	53103370	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	53.0	59.0	0.0	0.736111	0	.	.	none	.	POM121L12	146	.	NM_182595	exon1	c.C6T	p.G2G	CATGGGCGCTGCA	.	PASS	Atlas-SNP
KRTAP10-9	386676	hgsc.bcm.edu	37	21	46047105	46047105	+	Missense_Mutation	SNP	T	T	C	rs200504844	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	47.0	91.0	0.0	0.522222	0	T|0.999;C|0.001	0.001	weak	.	KRTAP10-9	24	.	NM_198690	exon1	c.T17C	p.M6T	CCACCATGTCCAT	.	PASS	Atlas-SNP
GTF2F1	2962	hgsc.bcm.edu	37	19	6392908	6392908	+	Missense_Mutation	SNP	T	T	C	rs140541374	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	80.0	37.0	70.0	0.0	0.4625	0	T|0.999;C|0.001	0.001	strong	.	GTF2F1	39	.	NM_002096	exon2	c.A19G	p.S7G	GGCTGCTAGGGCC	.	PASS	Atlas-SNP
CNDP1	84735	hgsc.bcm.edu	37	18	72228154	72228154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	113.0	34.0	87.0	0.0	0.300885	0	.	.	none	CNDP1,NS,carcinoma,-1,1	CNDP1	98	1	NM_032649	exon4	c.A367C	p.T123P	GATCCCACGAAAG	.	PASS	Atlas-SNP
ABCF2	10061	hgsc.bcm.edu	37	7	150920891	150920891	+	Silent	SNP	G	G	A	rs41273648	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	25.0	67.0	0.0	0.462963	0	G|0.985;A|0.015	0.015	strong	.	ABCF2	54	.	NM_007189	exon5	c.C595T	p.L199L	CATCCAGCTCCTC	.	PASS	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	37	5	118454599	118454599	+	Missense_Mutation	SNP	T	T	C	rs200933738	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	125.0	54.0	95.0	0.0	0.432	0	T|0.999;C|0.001	0.001	weak	.	DMXL1	268	.	NM_005509	exon8	c.T833C	p.L278P	GTTTGCTATACGG	.	PASS	Atlas-SNP
LY75	4065	hgsc.bcm.edu	37	2	160661704	160661704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	99.0	16.0	117.0	0.0	0.161616	0	.	.	none	.	LY75	151	.	NM_002349	exon35	c.G5020A	p.V1674I	TGGCAACTATGAT	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	37	4	48542671	48542671	+	Silent	SNP	G	G	A	rs373260615		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	117.0	57.0	132.0	0.0	0.487179	0	.	.	weak	.	FRYL	242	.	NM_015030	exon46	c.C5994T	p.N1998N	CATCAAGTTGGTA	.	PASS	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	37	1	108417534	108417534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	190.0	92.0	151.0	0.0	0.484211	0	.	.	none	.	VAV3	176	.	NM_006113	exon2	c.G310A	p.D104N	CAAAGTCACGAAC	.	PASS	Atlas-SNP
TGM2	7052	hgsc.bcm.edu	37	20	36766591	36766591	+	Silent	SNP	G	G	A	rs140171902	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	154.0	75.0	127.0	0.0	0.487013	0	G|1.000;A|0.000	0.000	strong	.	TGM2	88	.	NM_198951	exon10	c.C1539T	p.T513T	GCTGACGGTGCGG	.	PASS	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	37	8	144810346	144810346	+	Missense_Mutation	SNP	C	C	A	rs144418186	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	24.0	13.0	11.0	0.0	0.541667	0	C|0.991;A|0.009	0.009	strong	.	FAM83H	68	.	NM_198488	exon5	c.G1285T	p.V429L	GCGACACCTGCCG	.	PASS	Atlas-SNP
PROC	5624	hgsc.bcm.edu	37	2	128186156	128186156	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	99.0	42.0	84.0	0.0	0.424242	0	.	.	none	.	PROC	31	.	NM_000312	exon9	c.G1020A	p.T340T	CGTGACGGGCTGG	.	PASS	Atlas-SNP
FAM126A	84668	hgsc.bcm.edu	37	7	23030692	23030692	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	139.0	106.0	71.0	0.0	0.76259	0	.	.	none	.	FAM126A	53	.	NM_032581	exon2	c.G39A	p.L13L	CTCTGACAACCAT	.	PASS	Atlas-SNP
ZADH2	284273	hgsc.bcm.edu	37	18	72913920	72913920	+	Silent	SNP	C	C	T	rs61910717	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	84.0	59.0	76.0	0.0	0.702381	0	C|0.973;T|0.027	0.027	strong	.	ZADH2	25	.	NM_175907	exon2	c.G585A	p.K195K	CTTTGCCTTCTTT	.	PASS	Atlas-SNP
GATA6	2627	hgsc.bcm.edu	37	18	19762989	19762989	+	Silent	SNP	A	A	G	rs117646477	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	160.0	97.0	134.0	0.0	0.60625	0	A|0.999;G|0.001	0.001	strong	.	GATA6	35	.	NM_005257	exon6	c.A1605G	p.Q535Q	AACACAACCTACA	.	PASS	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	37	5	161117243	161117243	+	Missense_Mutation	SNP	A	A	G	rs76773579	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	131.0	65.0	112.0	0.0	0.496183	0	A|0.997;G|0.003	0.003	strong	.	GABRA6	139	.	NM_000811	exon7	c.A710G	p.Q237R	ACTTGCAAAGGAA	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112177171	112177171	+	Silent	SNP	G	G	A	rs465899	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	141.0	139.0	119.0	0.0	0.985816	0	G|0.332;A|0.668	0.668	strong	.	APC	4158	.	NM_001127510	exon17	c.G5880A	p.P1960P	TACTCCGGTTTGC	.	PASS	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	37	4	169227551	169227551	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	38.0	4.0	61.0	0.0	0.105263	0	.	.	none	.	DDX60	304	.	NM_017631	exon5	c.A585G	p.R195R	CTGGTGTCTGTAC	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	37	7	116435768	116435768	+	Silent	SNP	C	C	T	rs41736	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	123.0	122.0	123.0	1.0	0.99187	0.00813008	C|0.624;T|0.376	0.376	strong	MET,NS,carcinoma,0,1	MET	412	1	NM_001127500	exon20	c.C3912T	p.D1304D	TCCTGACGTAAAC	.	PASS	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	37	18	43523997	43523997	+	Missense_Mutation	SNP	T	T	C	rs61734402	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	42.0	75.0	0.0	0.466667	0	T|0.994;C|0.006	0.006	strong	.	EPG5	199	.	NM_020964	exon8	c.A1766G	p.Q589R	AGATGCTGAAAGA	.	PASS	Atlas-SNP
THOC1	9984	hgsc.bcm.edu	37	18	264030	264030	+	Silent	SNP	A	A	G	rs371643145		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	182.0	61.0	162.0	0.0	0.335165	0	.	.	weak	.	THOC1	43	.	NM_005131	exon4	c.T252C	p.T84T	ACCTTCAGTTACT	.	PASS	Atlas-SNP
GSTZ1	2954	hgsc.bcm.edu	37	14	77793237	77793237	+	Missense_Mutation	SNP	G	G	A	rs7972	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	54.0	22.0	38.0	0.0	0.407407	0	G|0.949;A|0.051	0.051	strong	.	GSTZ1	35	.	NM_145871	exon3	c.G124A	p.G42R	AAGGATGGGGGCC	.	PASS	Atlas-SNP
SLC12A9	56996	hgsc.bcm.edu	37	7	100463492	100463492	+	Silent	SNP	G	G	A	rs34433055	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	98.0	41.0	100.0	0.0	0.418367	0	G|0.991;A|0.009	0.009	strong	.	SLC12A9	81	.	NM_020246	exon14	c.G2010A	p.R670R	TCCCCGGGCTCCT	.	PASS	Atlas-SNP
VSX1	30813	hgsc.bcm.edu	37	20	25060143	25060143	+	Missense_Mutation	SNP	G	G	C	rs140122268	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	39.0	20.0	29.0	0.0	0.512821	0	G|0.997;C|0.003	0.003	strong	.	VSX1	20	.	NM_014588	exon2	c.C432G	p.D144E	CTGGCTGTCCTCA	.	PASS	Atlas-SNP
TSPYL4	23270	hgsc.bcm.edu	37	6	116574977	116574977	+	Missense_Mutation	SNP	A	A	C	rs187133419	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	15.0	34.0	0.0	0.428571	0	A|0.998;C|0.002	0.002	strong	.	TSPYL4	18	.	NM_021648	exon1	c.T195G	p.D65E	GACAGGATCCTGG	.	PASS	Atlas-SNP
FAM3D	131177	hgsc.bcm.edu	37	3	58639418	58639418	+	Missense_Mutation	SNP	C	C	T	rs13097314	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	39.0	17.0	35.0	0.0	0.435897	0	C|0.994;T|0.006	0.006	strong	FAM3D,colon,carcinoma,-1,1	FAM3D	29	1	NM_138805	exon3	c.G104A	p.R35H	GGCAGACGGATGG	.	PASS	Atlas-SNP
TRIM22	10346	hgsc.bcm.edu	37	11	5730343	5730343	+	Missense_Mutation	SNP	G	G	A	rs12364019	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	98.0	40.0	75.0	0.0	0.408163	0	G|0.976;A|0.024	0.024	strong	.	TRIM22	66	.	NM_006074	exon8	c.G962A	p.R321K	ATCAGAGACAAGT	.	PASS	Atlas-SNP
MPZL2	10205	hgsc.bcm.edu	37	11	118134830	118134830	+	Silent	SNP	G	G	A	rs36040758	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	33.0	38.0	0.0	0.458333	0	G|0.993;A|0.007	0.007	strong	.	MPZL2	20	.	NM_005797	exon1	c.C39T	p.L13L	GCCAAGGAGAAGA	.	PASS	Atlas-SNP
ALS2CL	259173	hgsc.bcm.edu	37	3	46717175	46717175	+	Missense_Mutation	SNP	C	C	T	rs142971127	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	15.0	33.0	0.0	0.340909	0	C|0.993;T|0.007	0.007	strong	.	ALS2CL	78	.	NM_001190707	exon20	c.G2188A	p.G730S	GCAGACCCCTGTG	.	PASS	Atlas-SNP
TNFSF13B	10673	hgsc.bcm.edu	37	13	108955609	108955609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	46.0	11.0	74.0	0.0	0.23913	0	.	.	none	.	TNFSF13B	25	.	NM_006573	exon4	c.A490G	p.T164A	TCTTACACATTTG	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51771044	51771044	+	Silent	SNP	G	G	A	rs140065359	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	20.0	7.0	36.0	0.0	0.35	0	G|0.996;A|0.004	0.004	strong	PKHD1_ENST00000340994,NS,carcinoma,0,2	PKHD1	927	2	NM_170724	exon41	c.C6777T	p.F2259F	ATTGTAGAATACA	.	PASS	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	37	20	57478807	57478807	+	Silent	SNP	C	C	T	rs7121	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	209.0	94.0	194.0	0.0	0.449761	0	C|0.395;T|0.605	0.605	strong	.	GNAS	867	.	NM_080425	exon5	c.C2322T	p.I774I	CTACATCCTGAGT	.	PASS	Atlas-SNP
ZNF718	255403	hgsc.bcm.edu	37	4	155411	155411	+	Silent	SNP	A	A	T	rs142742436	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	21.0	9.0	28.0	0.0	0.428571	0	A|0.992;T|0.008	0.008	strong	.	.	.	.	NM_001039127	exon4	c.A936T	p.S312S	CTTCTCATGCGAA	.	PASS	Atlas-SNP
PCDHA5	56143	hgsc.bcm.edu	37	5	140203463	140203463	+	Silent	SNP	C	C	A	rs142924665	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	159.0	76.0	154.0	0.0	0.477987	0	C|0.997;A|0.003	0.003	strong	.	PCDHA5	361	.	NM_018908	exon1	c.C2103A	p.I701I	GATCATCGCCATC	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1256127	1256127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	49.0	12.0	54.0	0.0	0.244898	0	.	.	none	.	CACNA1H	317	.	NM_021098	exon12	c.C2627T	p.A876V	GGCAGGCGGACGG	.	PASS	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	37	7	5396866	5396866	+	Missense_Mutation	SNP	C	C	G	rs200950320	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	124.0	47.0	65.0	0.0	0.379032	0	.	.	weak	.	TNRC18	311	.	NM_001080495	exon16	c.G4875C	p.Q1625H	TGCCAACTGCTCC	.	PASS	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	37	19	56029621	56029621	+	Silent	SNP	A	A	C	rs202012508	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	6.0	47.0	0.0	0.09375	0	.	.	weak	.	SSC5D	65	.	NM_001144950	exon14	c.A3978C	p.T1326T	CCCCACAACTCCT	.	PASS	Atlas-SNP
CCDC57	284001	hgsc.bcm.edu	37	17	80146154	80146154	+	Silent	SNP	G	G	C	rs201504809	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	23.0	50.0	0.0	0.418182	0	G|0.994;C|0.006	0.006	weak	.	CCDC57	102	.	NM_198082	exon7	c.C993G	p.L331L	CCTGCGGAGCTGC	.	PASS	Atlas-SNP
FAM172A	83989	hgsc.bcm.edu	37	5	93159971	93159971	+	Silent	SNP	T	T	C	rs141777861	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	128.0	66.0	162.0	0.0	0.515625	0	T|0.986;C|0.015	0.015	strong	.	FAM172A	38	.	NM_032042	exon8	c.A789G	p.E263E	ACCATTTTCCTAT	.	PASS	Atlas-SNP
ANKS4B	257629	hgsc.bcm.edu	37	16	21261302	21261302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	91.0	49.0	80.0	0.0	0.538462	0	.	.	none	.	ANKS4B	43	.	NM_145865	exon2	c.G415A	p.A139T	GAGCAGGCTCAGA	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	37	14	91681784	91681784	+	Missense_Mutation	SNP	G	G	A	rs115874122	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	56.0	27.0	61.0	0.0	0.482143	0	G|0.998;A|0.002	0.002	strong	.	C14orf159	57	.	NM_001102368	exon13	c.G1600A	p.A534T	GCCTGCGCACTCT	.	PASS	Atlas-SNP
ALPP	250	hgsc.bcm.edu	37	2	233245982	233245982	+	Missense_Mutation	SNP	G	G	A	rs143205011	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	393.0	121.0	342.0	0.0	0.307888	0	G|0.999;A|0.001	0.001	strong	.	ALPP	53	.	NM_001632	exon10	c.G1214A	p.R405Q	AGGCCCGGGACAG	.	PASS	Atlas-SNP
SPACA3	124912	hgsc.bcm.edu	37	17	31323886	31323886	+	Silent	SNP	C	C	T	rs200596990	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	59.0	37.0	56.0	0.0	0.627119	0	C|0.998;T|0.002	0.002	strong	SPACA3,NS,carcinoma,+1,1	SPACA3	35	1	NM_173847	exon3	c.C369T	p.S123S	CACAAGCGGTTTC	.	PASS	Atlas-SNP
PRDM15	63977	hgsc.bcm.edu	37	21	43230669	43230669	+	Silent	SNP	C	C	T	rs146699277	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	52.0	19.0	41.0	0.0	0.365385	0	C|0.999;T|0.001	0.001	strong	.	PRDM15	110	.	NM_022115	exon28	c.G3591A	p.T1197T	GGAGCACGTCCAC	.	PASS	Atlas-SNP
ARHGEF19	128272	hgsc.bcm.edu	37	1	16535487	16535487	+	Missense_Mutation	SNP	G	G	C	rs143314517	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	35.0	62.0	0.0	0.486111	0	G|0.993;C|0.007	0.007	strong	.	ARHGEF19	49	.	NM_153213	exon2	c.C63G	p.H21Q	AGGGTGGTGGGCA	.	PASS	Atlas-SNP
ZNF486	90649	hgsc.bcm.edu	37	19	20308207	20308207	+	Missense_Mutation	SNP	A	A	T	rs148497901	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	36.0	27.0	25.0	0.0	0.75	0	A|0.986;T|0.014	0.014	strong	.	ZNF486	74	.	NM_052852	exon4	c.A688T	p.I230L	CATAAGATAACTC	.	PASS	Atlas-SNP
SLC2A4	6517	hgsc.bcm.edu	37	17	7188459	7188459	+	Missense_Mutation	SNP	C	C	T	rs8192702	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	31.0	36.0	0.0	0.54386	0	C|0.996;T|0.004	0.004	strong	.	SLC2A4	44	.	NM_001042	exon9	c.C1073T	p.A358V	GCCTGGCGGGCAT	.	PASS	Atlas-SNP
NUP37	79023	hgsc.bcm.edu	37	12	102494849	102494849	+	Silent	SNP	T	T	C	rs17438178	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	130.0	66.0	164.0	0.0	0.507692	0	T|0.976;C|0.024	0.024	strong	.	NUP37	26	.	NM_024057	exon3	c.A315G	p.R105R	AAATAATCTAATT	.	PASS	Atlas-SNP
SYTL2	54843	hgsc.bcm.edu	37	11	85445365	85445365	+	Missense_Mutation	SNP	G	G	C	rs74718633	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	102.0	51.0	116.0	0.0	0.5	0	G|0.993;C|0.007	0.007	strong	.	SYTL2	231	.	NM_001162953	exon6	c.C1007G	p.S336C	ACTGCAGAGAATC	.	PASS	Atlas-SNP
BIN1	274	hgsc.bcm.edu	37	2	127809840	127809840	+	Silent	SNP	C	C	A	rs61748155	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	67.0	35.0	64.0	1.0	0.522388	0.015625	C|0.990;A|0.010	0.010	strong	BIN1,brain,glioma,0,1	BIN1	85	1	NM_139343	exon15	c.G1362T	p.G454G	GGCAGGCCCCGGC	.	scavenged	Atlas-SNP
SFXN1	94081	hgsc.bcm.edu	37	5	174936102	174936102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	204.0	9.0	166.0	0.0	0.0441176	0	.	.	none	.	SFXN1	23	.	NM_022754	exon3	c.G232T	p.A78S	GATTCAGCTTTTC	.	PASS	Atlas-SNP
C16orf55	124045	hgsc.bcm.edu	37	16	89724755	89724755	+	Missense_Mutation	SNP	C	C	T	rs13329897	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	69.0	28.0	64.0	0.0	0.405797	0	C|0.987;T|0.013	0.013	strong	.	C16orf55	6	.	NM_001271910	exon2	c.C137T	p.S46L	GGGAGTCGGAGAA	.	PASS	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	37	19	55451613	55451613	+	Missense_Mutation	SNP	T	T	G	rs104895529	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	108.0	56.0	125.0	0.0	0.518519	0	T|0.998;G|0.002	0.002	strong	.	NLRP7	411	.	NM_001127255	exon4	c.A574C	p.M192L	CCAGCATACACTT	.	PASS	Atlas-SNP
PRSS45	377047	hgsc.bcm.edu	37	3	46784532	46784532	+	Silent	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	78.0	45.0	60.0	0.0	0.576923	0	.	.	none	.	PRSS45	12	.	NM_199183	exon3	c.G324A	p.E108E	CTCAGCCTCCTGC	.	PASS	Atlas-SNP
TBX2	6909	hgsc.bcm.edu	37	17	59480547	59480547	+	Silent	SNP	C	C	T	rs140013823	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	44.0	24.0	38.0	0.0	0.545455	0	C|0.999;T|0.001	0.001	strong	.	TBX2	30	.	NM_005994	exon3	c.C789T	p.V263V	CGCCGTCACTGCC	.	PASS	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	37	16	81209325	81209325	+	Missense_Mutation	SNP	G	G	A	rs145948343	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	73.0	36.0	89.0	0.0	0.493151	0	G|0.999;A|0.001	0.001	strong	.	PKD1L2	361	.	NM_001076780	exon15	c.C2468T	p.A823V	GGGAGGGCAGGTT	.	PASS	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	37	5	16701796	16701796	+	Missense_Mutation	SNP	A	A	G	rs112696559	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	133.0	62.0	131.0	0.0	0.466165	0	A|0.994;G|0.006;T|0.000	0.006	strong	.	MYO10	198	.	NM_012334	exon25	c.T2708C	p.M903T	TCCTTCATGCGCT	.	PASS	Atlas-SNP
KDM6B	23135	hgsc.bcm.edu	37	17	7749972	7749972	+	Missense_Mutation	SNP	G	G	T	rs148641957	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	68.0	28.0	62.0	0.0	0.411765	0	G|0.997;T|0.003	0.003	strong	.	KDM6B	95	.	NM_001080424	exon8	c.G625T	p.V209L	CAGCCTGTGCCTC	.	PASS	Atlas-SNP
AMOT	154796	hgsc.bcm.edu	37	X	112053138	112053138	+	Silent	SNP	C	C	T	rs57201849	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	31.0	31.0	36.0	0.0	1	0	C|0.980;T|0.020	0.020	strong	.	AMOT	204	.	NM_001113490	exon4	c.G1614A	p.S538S	GAGCTGCGAGATG	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	7010233	7010233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	254.0	52.0	211.0	0.0	0.204724	0	.	.	none	.	LAMA1	458	.	NM_005559	exon26	c.G3839A	p.G1280E	CTCACTCCATTCT	.	PASS	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99126513	99126513	+	Silent	SNP	C	C	T	rs45527941	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	37.0	18.0	43.0	0.0	0.486486	0	C|0.962;T|0.038	0.038	strong	.	RRP12	97	.	NM_015179	exon27	c.G3201A	p.Q1067Q	TTTGCCCTGGGCG	.	PASS	Atlas-SNP
DDOST	1650	hgsc.bcm.edu	37	1	20980799	20980799	+	Silent	SNP	G	G	A	rs34189097	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	106.0	31.0	104.0	0.0	0.292453	0	G|0.999;A|0.001	0.001	strong	DDOST,caecum,carcinoma,-1,1	DDOST	30	1	NM_005216	exon7	c.C762T	p.R254R	GATGACGCGGGCA	.	PASS	Atlas-SNP
DNM2	1785	hgsc.bcm.edu	37	19	10939884	10939884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	44.0	76.0	0.0	0.556962	0	.	.	none	.	DNM2	175	.	NM_001005361	exon19	c.T2231C	p.V744A	GCACTGTGTCCAC	.	PASS	Atlas-SNP
TBCD	6904	hgsc.bcm.edu	37	17	80899349	80899349	+	Missense_Mutation	SNP	T	T	C	rs2292969	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	25.0	12.0	31.0	0.0	0.48	0	T|0.994;C|0.006	0.006	strong	.	TBCD	94	.	NM_005993	exon38	c.T3554C	p.L1185P	CCCAGCTGGTGCC	.	PASS	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	37	5	140237158	140237158	+	Missense_Mutation	SNP	G	G	A	rs142356019	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	160.0	79.0	73.0	0.0	0.49375	0	G|0.957;A|0.043	0.043	strong	.	PCDHA10	358	.	NM_031859	exon1	c.G1525A	p.V509M	GTGTCGGTGCACG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179611809	179611809	+	Silent	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	164.0	12.0	168.0	0.0	0.0731707	0	.	.	none	.	TTN	18412	.	NM_133379	exon46	c.T15318C	p.Y5106Y	TGTGGAATATCGC	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124157798	124157798	+	Silent	SNP	C	C	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	131.0	72.0	95.0	0.0	0.549618	0	.	.	none	KALRN_ENST00000360013,caecum,carcinoma,0,2	KALRN	556	2	NM_003947	exon18	c.C3106A	p.R1036R	GGTGGACGAGATA	.	PASS	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88789709	88789709	+	Missense_Mutation	SNP	C	C	T	rs191656121	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	38.0	18.0	19.0	0.0	0.473684	0	C|0.999;T|0.001	0.001	strong	.	PIEZO1	79	.	NM_001142864	exon32	c.G4363A	p.A1455T	CCTGGGCGTTGGT	.	PASS	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	37	2	207564537	207564537	+	Silent	SNP	C	C	T	rs113447424	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	146.0	71.0	125.0	1.0	0.486301	0.008	C|0.997;T|0.003	0.003	strong	DYTN,medulla,primitive_neuroectodermal_tumour-medulloblastoma,-1,1	DYTN	168	1	NM_001093730	exon7	c.G633A	p.P211P	GCAGGTCGGGAGC	.	scavenged	Atlas-SNP
KCNK17	89822	hgsc.bcm.edu	37	6	39267230	39267230	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	43.0	82.0	0.0	0.597222	0	.	.	none	.	KCNK17	61	.	NM_031460	exon5	c.C972T	p.H324H	TGCAGCGTGAGCA	.	PASS	Atlas-SNP
HEXDC	284004	hgsc.bcm.edu	37	17	80393704	80393704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	42.0	15.0	30.0	0.0	0.357143	0	.	.	none	.	HEXDC	43	.	NM_173620	exon6	c.T587C	p.V196A	CCCTGGTGTGGGA	.	PASS	Atlas-SNP
HTR3C	170572	hgsc.bcm.edu	37	3	183777328	183777328	+	Silent	SNP	C	C	T	rs138181384	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	134.0	44.0	122.0	0.0	0.328358	0	C|0.999;T|0.001	0.001	strong	.	HTR3C	65	.	NM_130770	exon7	c.C825T	p.S275S	AGAGAGCGAGAAT	.	PASS	Atlas-SNP
ZBTB7B	51043	hgsc.bcm.edu	37	1	154987363	154987363	+	Missense_Mutation	SNP	G	G	T	rs145349387	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	77.0	30.0	50.0	0.0	0.38961	0	G|0.999;T|0.001	0.001	strong	.	ZBTB7B	69	.	NM_001252406	exon4	c.G329T	p.G110V	CCGGGGGTAGCGG	.	PASS	Atlas-SNP
DDX58	23586	hgsc.bcm.edu	37	9	32481339	32481339	+	Missense_Mutation	SNP	C	C	T	rs61752945	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	78.0	38.0	88.0	1.0	0.487179	0.0113636	C|0.987;T|0.013	0.013	strong	DDX58,colon,carcinoma,-1,1	DDX58	82	1	NM_014314	exon11	c.G1637A	p.R546Q	CGTACCCGCAAAT	.	scavenged	Atlas-SNP
JAG2	3714	hgsc.bcm.edu	37	14	105615514	105615514	+	Silent	SNP	G	G	A	rs368778866		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	103.0	53.0	52.0	0.0	0.514563	0	.	.	weak	.	JAG2	69	.	NM_002226	exon13	c.C1746T	p.A582A	TCTGCAGGCCCCG	.	PASS	Atlas-SNP
KCNK12	56660	hgsc.bcm.edu	37	2	47748388	47748388	+	Silent	SNP	G	G	A	rs115862926	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	19.0	12.0	16.0	0.0	0.631579	0	G|0.998;A|0.002	0.002	strong	.	KCNK12	11	.	NM_022055	exon2	c.C951T	p.C317C	CGCGCAGCAGCGG	.	PASS	Atlas-SNP
PRRG2	5639	hgsc.bcm.edu	37	19	50091763	50091763	+	Missense_Mutation	SNP	G	G	A	rs117225796	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	62.0	37.0	58.0	0.0	0.596774	0	G|0.995;A|0.005	0.005	strong	.	PRRG2	13	.	NM_000951	exon5	c.G311A	p.R104Q	GTGGACGAGTGGA	.	PASS	Atlas-SNP
KRT16	3868	hgsc.bcm.edu	37	17	39767731	39767731	+	Missense_Mutation	SNP	G	G	A	rs148173278	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	147.0	70.0	128.0	0.0	0.47619	0	G|0.997;A|0.003	0.003	strong	.	KRT16	45	.	NM_005557	exon3	c.C637T	p.R213W	TCTGCCGCAGGGC	.	PASS	Atlas-SNP
MED22	6837	hgsc.bcm.edu	37	9	136208442	136208442	+	Silent	SNP	C	C	T	rs78711238	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	133.0	62.0	120.0	0.0	0.466165	0	C|0.988;T|0.012	0.012	strong	.	MED22	13	.	NM_133640	exon5	c.G516A	p.A172A	CGGGGACGCCAGC	.	PASS	Atlas-SNP
EP300	2033	hgsc.bcm.edu	37	22	41574383	41574383	+	Missense_Mutation	SNP	A	A	C	rs1046088	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	108.0	43.0	91.0	0.0	0.398148	0	A|0.977;C|0.023	0.023	strong	.	EP300	367	.	NM_001429	exon31	c.A6668C	p.Q2223P	CACAGCAGCAGCA	.	PASS	Atlas-SNP
ANGPTL4	51129	hgsc.bcm.edu	37	19	8431131	8431131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	25.0	77.0	0.0	0.390625	0	.	.	none	.	ANGPTL4	21	.	NM_001039667	exon3	c.C475G	p.P159A	GCCAAGCCTGCCC	.	PASS	Atlas-SNP
NFATC2	4773	hgsc.bcm.edu	37	20	50092193	50092193	+	Missense_Mutation	SNP	T	T	C	rs12479626	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	124.0	53.0	129.0	1.0	0.427419	0.00775194	T|0.992;C|0.008	0.008	strong	NFATC2,NS,carcinoma,0,1	NFATC2	112	1	NM_012340	exon4	c.A1337G	p.H446R	TAGCCATGGAGCT	.	scavenged	Atlas-SNP
AHRR	57491	hgsc.bcm.edu	37	5	434546	434546	+	Missense_Mutation	SNP	C	C	T	rs61757546	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	43.0	19.0	44.0	0.0	0.44186	0	C|0.996;T|0.004	0.004	strong	.	AHRR	67	.	NM_020731	exon12	c.C1757T	p.A586V	ACCCAGCCACCTT	.	PASS	Atlas-SNP
HFE	3077	hgsc.bcm.edu	37	6	26093141	26093141	+	Missense_Mutation	SNP	G	G	A	rs1800562	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	138.0	77.0	152.0	0.0	0.557971	0	G|0.966;A|0.034	0.034	strong	.	HFE	37	.	NM_000410	exon4	c.G845A	p.C282Y	ATACGTGCCAGGT	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112164561	112164561	+	Silent	SNP	G	G	A	rs351771	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	111.0	134.0	0.0	1	0	G|0.388;A|0.612	0.612	strong	.	APC	4158	.	NM_001127510	exon15	c.G1635A	p.A545A	TATTGCGAGTGTT	.	PASS	Atlas-SNP
DDX55	57696	hgsc.bcm.edu	37	12	124086736	124086736	+	Missense_Mutation	SNP	T	T	G	rs141195308	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	48.0	21.0	45.0	1.0	0.4375	0.0222222	T|0.998;G|0.002	0.002	strong	DDX55,NS,lymphoid_neoplasm,0,1	DDX55	51	1	NM_020936	exon1	c.T41G	p.V14G	TGCCTGTGCCGCT	.	scavenged	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	37	19	48183748	48183748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	22.0	12.0	14.0	0.0	0.545455	0	.	.	none	.	GLTSCR1	79	.	NM_015711	exon6	c.G1321A	p.G441R	CCCCCCGGGGCCC	.	PASS	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	37	7	127999459	127999459	+	Missense_Mutation	SNP	G	G	A	rs145413607	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	56.0	30.0	69.0	0.0	0.535714	0	G|0.991;A|0.009	0.009	strong	PRRT4,NS,carcinoma,0,1	PRRT4	31	1	NM_001174164	exon3	c.C587T	p.T196M	GGCAGCGTTCGAT	.	PASS	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	37	22	36681272	36681272	+	Missense_Mutation	SNP	T	T	C	rs141440715	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	122.0	60.0	97.0	0.0	0.491803	0	T|1.000;C|0.000	0.000	strong	.	MYH9	225	.	NM_002473	exon38	c.A5378G	p.K1793R	TGCAGCTTGACCT	.	PASS	Atlas-SNP
OGDH	4967	hgsc.bcm.edu	37	7	44715599	44715599	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	130.0	85.0	78.0	0.0	0.653846	0	.	.	none	.	OGDH	145	.	NM_002541	exon9	c.A1057T	p.M353L	CTGGGCATGTATC	.	PASS	Atlas-SNP
TMED8	283578	hgsc.bcm.edu	37	14	77810133	77810133	+	Missense_Mutation	SNP	C	C	T	rs142882254	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	85.0	37.0	101.0	0.0	0.435294	0	C|0.996;T|0.004	0.004	strong	.	TMED8	27	.	NM_213601	exon4	c.G361A	p.D121N	CGATGTCCCCAGA	.	PASS	Atlas-SNP
FNDC4	64838	hgsc.bcm.edu	37	2	27716823	27716823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	76.0	24.0	73.0	0.0	0.315789	0	.	.	none	FNDC4,NS,carcinoma,-1,1	FNDC4	21	1	NM_022823	exon4	c.G428A	p.R143Q	GGTAGCCGGTCAG	.	PASS	Atlas-SNP
FOXN2	3344	hgsc.bcm.edu	37	2	48573875	48573875	+	Silent	SNP	A	A	G	rs35742253	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	21.0	11.0	30.0	0.0	0.52381	0	A|0.992;G|0.008	0.008	strong	.	FOXN2	39	.	NM_002158	exon3	c.A522G	p.E174E	AGTGGAAAGAAGC	.	PASS	Atlas-SNP
XKR8	55113	hgsc.bcm.edu	37	1	28290132	28290132	+	Silent	SNP	T	T	C	rs61743136	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	106.0	45.0	100.0	0.0	0.424528	0	T|0.987;C|0.013	0.013	strong	.	XKR8	15	.	NM_018053	exon2	c.T418C	p.L140L	ACCTTCTTGGAGA	.	PASS	Atlas-SNP
NTN3	4917	hgsc.bcm.edu	37	16	2522536	2522536	+	Silent	SNP	T	T	C	rs148996457		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	33.0	17.0	31.0	0.0	0.515152	0	T|1.000;C|0.000	0.000	weak	.	NTN3	28	.	NM_006181	exon1	c.T834C	p.H278H	TCGGCATGGCACC	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1274209	1274209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	100.0	44.0	70.0	0.0	0.44	0	.	.	none	.	MUC5B	473	.	NM_002458	exon33	c.G15216T	p.E5072D	GTGCGAGTGTGAG	.	PASS	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	37	22	50217300	50217300	+	Silent	SNP	G	G	A	rs374070979		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	57.0	33.0	46.0	0.0	0.578947	0	.	.	weak	.	BRD1	144	.	NM_014577	exon1	c.C666T	p.D222D	CTCCCCGTCCATG	.	PASS	Atlas-SNP
COBLL1	22837	hgsc.bcm.edu	37	2	165578602	165578602	+	Missense_Mutation	SNP	C	C	T	rs74459242	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	102.0	58.0	81.0	0.0	0.568627	0	C|0.971;T|0.029	0.029	strong	.	COBLL1	122	.	NM_014900	exon6	c.G979A	p.V327M	CATCCACGCTCAT	.	PASS	Atlas-SNP
ZBTB16	7704	hgsc.bcm.edu	37	11	114121182	114121182	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	38.0	2.0	59.0	0.0	0.0526316	0	.	.	none	ZBTB16_ENST00000335953,NS,carcinoma,0,1	ZBTB16	101	1	NM_006006	exon7	c.T1927A	p.S643T	AGCCTCTCCTCCA	.	scavenged	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	37	1	18807523	18807523	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	218.0	113.0	236.0	1.0	0.518349	0.00423729	.	.	none	.	KLHDC7A	60	.	NM_152375	exon1	c.G48A	p.Q16Q	TATGCAGCTGACC	.	PASS	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	37	5	140188354	140188354	+	Missense_Mutation	SNP	C	C	G	rs142480630	bycluster	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	65.0	20.0	110.0	0.0	0.307692	0	C|0.999;G|0.001	0.001	weak	PCDHA4_ENST00000530339,NS,carcinoma,0,8	PCDHA4	419	8	NM_031500	exon1	c.C1582G	p.L528V	GAGGAGCTAGAGC	.	PASS	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	37	5	169267839	169267839	+	Missense_Mutation	SNP	C	C	T	rs200070944	alternate_allele	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	42.0	91.0	0.0	0.56	0	C|0.999;A|0.001	.	alt	.	DOCK2	389	.	NM_004946	exon27	c.C2782T	p.R928W	ATGGGCCGGGATC	.	PASS	Atlas-SNP
UGT1A10	54575	hgsc.bcm.edu	37	2	234545932	234545932	+	Missense_Mutation	SNP	C	C	T	rs45574333	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	153.0	71.0	133.0	0.0	0.464052	0	C|0.999;T|0.001	0.001	strong	.	UGT1A10	71	.	NM_019075	exon1	c.C764T	p.T255M	TGCGAACGGACTT	.	PASS	Atlas-SNP
IDH1	3417	hgsc.bcm.edu	37	2	209108317	209108317	+	Missense_Mutation	SNP	C	C	T	rs34218846	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	66.0	33.0	70.0	0.0	0.5	0	C|0.946;T|0.054	0.054	strong	IDH1,colon,carcinoma,0,9	IDH1	6310	9	NM_005896	exon6	c.G532A	p.V178I	TGGCAACACCACC	.	PASS	Atlas-SNP
GTF2F1	2962	hgsc.bcm.edu	37	19	6392910	6392910	+	Missense_Mutation	SNP	G	G	A	rs150462935	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	79.0	35.0	71.0	0.0	0.443038	0	G|0.999;A|0.001	0.001	strong	.	GTF2F1	39	.	NM_002096	exon2	c.C17T	p.P6L	CTGCTAGGGCCCT	.	PASS	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	37	1	6188596	6188596	+	Silent	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	75.0	41.0	75.0	0.0	0.546667	0	.	.	none	.	CHD5	267	.	NM_015557	exon24	c.C3693T	p.A1231A	ACTGGCGGCCAAG	.	PASS	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	37	18	22804942	22804942	+	Silent	SNP	C	C	T	rs187705938	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	81.0	28.0	68.0	0.0	0.345679	0	C|0.999;T|0.001	0.001	strong	ZNF521,NS,carcinoma,-1,1	ZNF521	269	1	NM_015461	exon4	c.G2940A	p.T980T	ACTATGCGTGACT	.	PASS	Atlas-SNP
PDIA6	10130	hgsc.bcm.edu	37	2	10929938	10929938	+	Silent	SNP	G	G	A	rs138712410	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	77.0	39.0	68.0	0.0	0.506494	0	G|0.994;A|0.006	0.006	strong	PDIA6,NS,carcinoma,0,1	PDIA6	31	1	NM_005742	exon8	c.C777T	p.S259S	GATGTCGGATCTT	.	PASS	Atlas-SNP
PAXBP1	94104	hgsc.bcm.edu	37	21	34132288	34132288	+	Silent	SNP	G	G	A	rs149224793	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	96.0	43.0	104.0	0.0	0.447917	0	G|0.999;A|0.001	0.001	strong	.	.	.	.	NM_013329	exon6	c.C993T	p.P331P	TTCTGCGGGTTGA	.	PASS	Atlas-SNP
CMTM2	146225	hgsc.bcm.edu	37	16	66613725	66613725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	80.0	40.0	69.0	0.0	0.5	0	.	.	none	.	CMTM2	33	.	NM_001199317	exon1	c.G215A	p.R72Q	GCTACCGGTGGGA	.	PASS	Atlas-SNP
TAF1A	9015	hgsc.bcm.edu	37	1	222732051	222732051	+	Missense_Mutation	SNP	C	C	T	rs143557200	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	90.0	43.0	90.0	0.0	0.477778	0	C|0.994;T|0.006	0.006	strong	TAF1A,NS,carcinoma,0,1	TAF1A	35	1	NM_001201536	exon11	c.G1304A	p.R435Q	TTCATCCGCTTAA	.	PASS	Atlas-SNP
LIG1	3978	hgsc.bcm.edu	37	19	48664687	48664687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	38.0	24.0	55.0	0.0	0.631579	0	.	.	none	.	LIG1	151	.	NM_000234	exon4	c.G185A	p.R62Q	AGGACCCGGGCCG	.	PASS	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	37	2	71778829	71778829	+	Silent	SNP	G	G	A	rs35984374	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	47.0	26.0	42.0	0.0	0.553191	0	G|0.987;A|0.013	0.013	strong	.	DYSF	536	.	NM_001130982	exon20	c.G1827A	p.A609A	TCCTGCGGATGAC	.	PASS	Atlas-SNP
SLC2A14	144195	hgsc.bcm.edu	37	12	7985318	7985318	+	Silent	SNP	C	C	A	rs10846018	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	50.0	97.0	0.0	0.537634	0	C|0.979;A|0.021	0.021	strong	.	SLC2A14	78	.	NM_153449	exon4	c.G180T	p.T60T	ACTCACCGTCTCA	.	PASS	Atlas-SNP
ARPP21	10777	hgsc.bcm.edu	37	3	35780947	35780947	+	Missense_Mutation	SNP	G	G	A	rs151173813	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	135.0	76.0	108.0	0.0	0.562963	0	G|0.997;A|0.003	0.003	strong	ARPP21,NS,NS,0,1	ARPP21	153	1	NM_001267619	exon16	c.G1786A	p.A596T	GTAATCGCCTCTA	.	PASS	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	37	6	146993392	146993392	+	Silent	SNP	A	A	G	rs77104188	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	118.0	51.0	118.0	0.0	0.432203	0	A|0.976;G|0.024	0.024	strong	.	ADGB	93	.	NM_024694	exon8	c.A876G	p.K292K	CCTGAAAGAAATA	.	PASS	Atlas-SNP
TFIP11	24144	hgsc.bcm.edu	37	22	26899695	26899695	+	Silent	SNP	G	G	A	rs74334826	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	88.0	44.0	74.0	0.0	0.5	0	G|0.991;A|0.009	0.009	strong	.	TFIP11	72	.	NM_001008697	exon8	c.C585T	p.S195S	GCGCTCGGATCCA	.	PASS	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	37	12	122404946	122404946	+	Missense_Mutation	SNP	C	C	T	rs146415200	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	83.0	42.0	82.0	0.0	0.506024	0	C|0.995;T|0.005	0.005	strong	WDR66,NS,carcinoma,-1,1	WDR66	143	1	NM_001178003	exon16	c.C2578T	p.R860C	CAGAAACGCTACT	.	PASS	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	37	16	15127249	15127249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	46.0	62.0	0.0	0.638889	0	.	.	none	.	PDXDC1	59	.	NM_015027	exon19	c.A1805G	p.N602S	AGGAGAACTCGAG	.	PASS	Atlas-SNP
MARK3	4140	hgsc.bcm.edu	37	14	103941454	103941454	+	Silent	SNP	G	G	A	rs56126530	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	105.0	51.0	95.0	0.0	0.485714	0	G|0.989;A|0.011	0.011	strong	.	MARK3	86	.	NM_001128919	exon13	c.G1389A	p.K463K	AGGAAAGGGAATT	.	PASS	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	37	2	98797660	98797660	+	Silent	SNP	C	C	T	rs375244468		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	168.0	68.0	154.0	0.0	0.404762	0	.	.	weak	.	VWA3B	138	.	NM_144992	exon9	c.C1296T	p.S432S	TGAGTCCGTGCAG	.	PASS	Atlas-SNP
CASP8AP2	9994	hgsc.bcm.edu	37	6	90577650	90577650	+	Silent	SNP	T	T	G	rs200433993	bycluster;byfrequency	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	96.0	37.0	89.0	0.0	0.385417	0	T|0.996;G|0.004	0.004	strong	CASP8AP2,caecum,carcinoma,+2,1	CASP8AP2	108	1	NM_001137667	exon8	c.T4641G	p.R1547R	ACGACGTGCAACA	.	PASS	Atlas-SNP
ZNF100	163227	hgsc.bcm.edu	37	19	21910621	21910621	+	Silent	SNP	A	A	G	rs11556742	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	111.0	48.0	95.0	0.0	0.432432	0	A|0.980;G|0.020	0.020	strong	.	ZNF100	62	.	NM_173531	exon5	c.T493C	p.L165L	GGTTTAATTTGTT	.	PASS	Atlas-SNP
FOXRED2	80020	hgsc.bcm.edu	37	22	36886112	36886112	+	Silent	SNP	G	G	A	rs34949308	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	64.0	24.0	63.0	0.0	0.375	0	G|0.991;A|0.009	0.009	strong	.	FOXRED2	48	.	NM_001102371	exon9	c.C1998T	p.S666S	CAGGGGGGAACCT	.	PASS	Atlas-SNP
BBOX1	8424	hgsc.bcm.edu	37	11	27148847	27148847	+	Silent	SNP	G	G	A	rs77035197	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	55.0	30.0	67.0	0.0	0.545455	0	G|0.968;A|0.032	0.032	strong	.	BBOX1	46	.	NM_003986	exon9	c.G1011A	p.V337V	TGATGTGATTACT	.	PASS	Atlas-SNP
RECQL5	9400	hgsc.bcm.edu	37	17	73624466	73624466	+	Silent	SNP	G	G	A	rs140010427	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	67.0	30.0	87.0	0.0	0.447761	0	G|0.997;A|0.003	0.003	strong	.	RECQL5	77	.	NM_004259	exon18	c.C2637T	p.V879V	AGCTACGACGGAG	.	PASS	Atlas-SNP
PPP3CA	5530	hgsc.bcm.edu	37	4	101984390	101984390	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	124.0	26.0	146.0	0.0	0.209677	0	.	.	none	.	PPP3CA	51	.	NM_000944	exon9	c.A1080G	p.K360K	CATACCTTTTTCC	.	PASS	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	37	12	124856830	124856830	+	Missense_Mutation	SNP	C	C	T	rs142292731	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	62.0	23.0	32.0	0.0	0.370968	0	C|0.988;T|0.012	0.012	strong	.	NCOR2	475	.	NM_006312	exon22	c.G2545A	p.E849K	GCTCCTCAGCCGC	.	PASS	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	37	17	62049749	62049749	+	Missense_Mutation	SNP	C	C	T	rs41280110	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	146.0	85.0	119.0	0.0	0.582192	0	C|0.998;T|0.002	0.002	strong	SCN4A,NS,carcinoma,+1,1	SCN4A	205	1	NM_000334	exon2	c.G355A	p.V119I	TGACTACGCTGAA	.	PASS	Atlas-SNP
FAM194A	131831	hgsc.bcm.edu	37	3	150398311	150398311	+	Missense_Mutation	SNP	C	C	A	rs144597450	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	112.0	47.0	95.0	0.0	0.419643	0	C|0.990;A|0.010	0.010	strong	.	FAM194A	91	.	NM_152394	exon9	c.G1055T	p.R352L	GCCATTCGTTGCT	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	37	7	116436097	116436097	+	Silent	SNP	G	G	A	rs41737	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	148.0	148.0	126.0	0.0	1	0	G|0.615;A|0.385	0.385	strong	MET,NS,carcinoma,0,1	MET	412	1	NM_001127500	exon21	c.G4146A	p.P1382P	CGCTCCGTATCCT	.	PASS	Atlas-SNP
RLBP1	6017	hgsc.bcm.edu	37	15	89753546	89753546	+	Silent	SNP	G	G	C	rs144615495	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	35.0	19.0	44.0	0.0	0.542857	0	G|0.999;C|0.001	0.001	strong	.	RLBP1	34	.	NM_000326	exon9	c.C924G	p.P308P	GGCCTGGGGGCCA	.	PASS	Atlas-SNP
PPFIA1	8500	hgsc.bcm.edu	37	11	70189892	70189892	+	Missense_Mutation	SNP	A	A	G	rs146858711	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	36.0	76.0	0.0	0.5	0	A|0.998;G|0.002	0.002	strong	.	PPFIA1	114	.	NM_177423	exon15	c.A1825G	p.T609A	AGGGACACTCTCC	.	PASS	Atlas-SNP
TRIM50	135892	hgsc.bcm.edu	37	7	72738638	72738638	+	Missense_Mutation	SNP	C	C	T	rs138877207	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	150.0	82.0	156.0	0.0	0.546667	0	A|0.000;C|1.000;T|0.000	0.000	strong	.	TRIM50	78	.	NM_178125	exon2	c.G148A	p.E50K	GCAGCTCGGCATC	.	PASS	Atlas-SNP
NPHP3	27031	hgsc.bcm.edu	37	3	132441143	132441143	+	Silent	SNP	C	C	G	rs192633696	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	19.0	8.0	7.0	0.0	0.421053	0	C|0.991;G|0.009	0.009	strong	.	NPHP3	110	.	NM_153240	exon1	c.G57C	p.T19T	CCCGTACGTGTCC	.	PASS	Atlas-SNP
SPATA21	374955	hgsc.bcm.edu	37	1	16748432	16748432	+	Silent	SNP	C	C	T	rs114456729	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	93.0	46.0	109.0	0.0	0.494624	0	C|0.954;T|0.046	0.046	strong	SPATA21,NS,carcinoma,-1,2	SPATA21	47	2	NM_198546	exon4	c.G69A	p.T23T	TCCAGGCGTGGAT	.	PASS	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	37	2	242380734	242380734	+	Missense_Mutation	SNP	G	G	A	rs146443541	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	74.0	25.0	74.0	0.0	0.337838	0	G|0.999;A|0.001	0.001	strong	.	FARP2	92	.	NM_014808	exon13	c.G1174A	p.E392K	TTCCCCGAGGGAT	.	PASS	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	37	17	26961735	26961735	+	Missense_Mutation	SNP	G	G	A	rs118181996	bycluster;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	72.0	22.0	66.0	0.0	0.305556	0	G|0.999;A|0.001	0.001	strong	.	KIAA0100	175	.	NM_014680	exon16	c.C2870T	p.T957I	ATGGGTGTGTTGC	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	37	11	5364431	5364431	+	Silent	SNP	G	G	A	rs58233587	bycluster;byfrequency;by1000genomes	TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	23.0	9.0	27.0	0.0	0.391304	0	G|0.886;A|0.114	0.114	strong	OR51B5,NS,carcinoma,-1,1	OR51B5	60	1	NM_001005567	exon5	c.C324T	p.L108L	AGACTCGAGAAAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179611884	179611884	+	Silent	SNP	T	T	C	novel		TCGA-G8-6914-01A-11D-2210-10	TCGA-G8-6914-14A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	16ea266a-69ef-42a9-81c7-affe59adb1ce	366ac237-58d3-45ae-bf82-9f85fc562612	165.0	17.0	137.0	0.0	0.10303	0	.	.	none	.	TTN	18412	.	NM_133379	exon46	c.A15243G	p.L5081L	TCTCTCTAGAGTC	.	PASS	Atlas-SNP