Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TTotCov TVarCov NTotCov NVarCov TVarRat NVarRat dbSNP_AF dbSNP_PopFreq dbSNP_Strength COSMIC_Codon COSMIC_Gene COSMIC_Gene_Freq COSMIC_Site_Freq Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target Confidence Algorithm PARP9 83666 hgsc.bcm.edu 37 3 122247338 122247343 + In_Frame_Del DEL GCCTGC GCCTGC - novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 GCCTGC GCCTGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 115.0 26.0 149.0 0.0 0.226087 0 . . none . PARP9 72 . NM_001146102 exon11 c.2434_2439del p.812_813del . . PASS Atlas-Indel PARP9 83666 hgsc.bcm.edu 37 3 122247346 122247346 + Frame_Shift_Del DEL G G - novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 120.0 28.0 144.0 0.0 0.233333 0 . . none . PARP9 72 . NM_001146102 exon11 c.2431delA p.M811fs . . PASS Atlas-Indel DLG5 9231 hgsc.bcm.edu 37 10 79565519 79565520 + Frame_Shift_Ins INS - - A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 17.0 17.0 0.0 0.0 1.000 . . . none . DLG5 154 . NM_004747 exon27 c.5068_5069insT p.R1690fs . . PASS Pindel,Atlas-Indel ANKRD23 200539 hgsc.bcm.edu 37 2 97507820 97507821 + Frame_Shift_Ins INS - - G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 20.0 20.0 0.0 0.0 1.000 . . . none . ANKRD23 28 . NM_144994 exon3 c.277_278insC p.R93fs . . PASS Pindel,Atlas-Indel PARP9 83666 hgsc.bcm.edu 37 3 122247336 122247347 + In_Frame_Del DEL TAGCCTGCATGC TAGCCTGCATGC - novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 TAGCCTGCATGC TAGCCTGCATGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 26.0 26.0 0.0 0.0 1.000 . . . none . PARP9 72 . NM_001146102 exon11 c.2430_2441del p.810_814del . . PASS Pindel B3GALTL 145173 hgsc.bcm.edu 37 13 31891810 31891810 + Missense_Mutation SNP C C T rs144117014 TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 39.0 14.0 63.0 0.0 0.358974 0 C|1.000;T|0.000 0.000 weak . B3GALTL 48 . NM_194318 exon13 c.C1172T p.T391M ACATCACGGGAGG . PASS Atlas-SNP MFSD6 54842 hgsc.bcm.edu 37 2 191300917 191300917 + Silent SNP A A C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 188.0 84.0 168.0 0.0 0.446809 0 . . none . MFSD6 58 . NM_017694 exon3 c.A162C p.I54I GGAAATAGACTGG . PASS Atlas-SNP SMYD1 150572 hgsc.bcm.edu 37 2 88387391 88387391 + Missense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 142.0 48.0 148.0 0.0 0.338028 0 . . none . SMYD1 95 . NM_198274 exon3 c.C325T p.R109C GCGGCGCGCATCA . PASS Atlas-SNP SOCS3 9021 hgsc.bcm.edu 37 17 76354835 76354835 + Silent SNP C C A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 64.0 34.0 79.0 0.0 0.53125 0 . . none . SOCS3 16 . NM_003955 exon2 c.G342T p.V114V GCGGGGCACGGGC . PASS Atlas-SNP ZCWPW2 152098 hgsc.bcm.edu 37 3 28476649 28476649 + Silent SNP T T G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 363.0 129.0 364.0 1.0 0.355372 0.00274725 . . none . ZCWPW2 49 . NM_001040432 exon3 c.T381G p.T127T TGTAACTTATGAC . PASS Atlas-SNP DMBT1 1755 hgsc.bcm.edu 37 10 124352028 124352028 + Missense_Mutation SNP A A G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 15.0 14.0 25.0 0.0 0.933333 0 . . none . DMBT1 677 . NM_007329 exon20 c.A2417G p.E806G GACACGAGTCCTA . PASS Atlas-SNP DSCAM 1826 hgsc.bcm.edu 37 21 41414420 41414420 + Missense_Mutation SNP G G A rs200410460 bycluster TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 81.0 31.0 67.0 0.0 0.382716 0 . . weak . DSCAM 347 . NM_001271534 exon32 c.C5564T p.T1855M CTGTCCGTGTACT . PASS Atlas-SNP ZNF782 158431 hgsc.bcm.edu 37 9 99581542 99581542 + Missense_Mutation SNP T T C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 79.0 22.0 67.0 0.0 0.278481 0 . . none . ZNF782 64 . NM_001001662 exon6 c.A763G p.K255E TTGATTTATCATA . PASS Atlas-SNP MUC16 94025 hgsc.bcm.edu 37 19 9047271 9047271 + Missense_Mutation SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 81.0 31.0 76.0 0.0 0.382716 0 . . none . MUC16 4315 . NM_024690 exon5 c.C34360T p.P11454S CACCAGGGGAGAC . PASS Atlas-SNP VPS13D 55187 hgsc.bcm.edu 37 1 12387807 12387807 + Missense_Mutation SNP C C T rs143572864 bycluster TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 120.0 51.0 127.0 0.0 0.425 0 C|1.000;T|0.000 0.000 weak VPS13D,NS,carcinoma,+1,1 VPS13D 316 1 NM_015378 exon36 c.C8093T p.A2698V TGGCAGCGCCATT . PASS Atlas-SNP PSG3 5671 hgsc.bcm.edu 37 19 43234049 43234049 + Missense_Mutation SNP A A T rs28698193 bycluster;byfrequency;by1000genomes TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 53.0 5.0 54.0 0.0 0.0943396 0 A|0.879;T|0.121 0.121 strong . PSG3 82 . NM_021016 exon4 c.T869A p.I290N TTTTCAATGGGTC . PASS Atlas-SNP ADCYAP1R1 117 hgsc.bcm.edu 37 7 31132339 31132339 + Missense_Mutation SNP A A G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 41.0 27.0 49.0 0.0 0.658537 0 . . none . ADCYAP1R1 78 . NM_001118 exon13 c.A1036G p.S346G GAGTCCAGCATCT . PASS Atlas-SNP ABCC6 368 hgsc.bcm.edu 37 16 16248757 16248757 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 93.0 33.0 98.0 0.0 0.354839 0 . . none . ABCC6 110 . NM_001171 exon28 c.G4014A p.L1338L GGAGCGCAGTGTG . PASS Atlas-SNP MOCS3 27304 hgsc.bcm.edu 37 20 49575721 49575721 + Silent SNP T T C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 52.0 17.0 59.0 0.0 0.326923 0 . . none . MOCS3 44 . NM_014484 exon1 c.T342C p.Y114Y GGACTATGACGTG . PASS Atlas-SNP CYP26C1 340665 hgsc.bcm.edu 37 10 94824263 94824263 + Silent SNP G G T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 97.0 5.0 129.0 0.0 0.0515464 0 . . none . CYP26C1 25 . NM_183374 exon4 c.G831T p.L277L GGAGCTGGGCCAT . PASS Atlas-SNP ME3 10873 hgsc.bcm.edu 37 11 86198437 86198437 + Missense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 92.0 58.0 82.0 0.0 0.630435 0 . . none . ME3 70 . NM_006680 exon7 c.G751A p.V251M CGTGCACGCGCTG . PASS Atlas-SNP CSGALNACT2 55454 hgsc.bcm.edu 37 10 43659419 43659419 + Missense_Mutation SNP G G T rs79064394 bycluster TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 126.0 6.0 162.0 1.0 0.047619 0.00617284 . . weak CSGALNACT2,NS,carcinoma,0,5 CSGALNACT2 67 5 NM_018590 exon5 c.G1086T p.L362F GGTCTTGATGTTT . scavenged Atlas-SNP KCNH1 3756 hgsc.bcm.edu 37 1 211256200 211256200 + Missense_Mutation SNP G G T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 43.0 18.0 49.0 0.0 0.418605 0 . . none KCNH1,NS,carcinoma,0,1 KCNH1 199 1 NM_172362 exon5 c.C480A p.S160R CCTGCTGCTTGTC . PASS Atlas-SNP GPR156 165829 hgsc.bcm.edu 37 3 119892302 119892302 + Missense_Mutation SNP C C A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 109.0 36.0 119.0 0.0 0.330275 0 . . none GPR156,rectum,carcinoma,0,1 GPR156 85 1 NM_153002 exon8 c.G949T p.A317S CAAATGCCTTCCA . PASS Atlas-SNP CSNK2B 1460 hgsc.bcm.edu 37 6 31637636 31637636 + Missense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 23.0 11.0 38.0 0.0 0.478261 0 . . none . CSNK2B 15 . NM_001320 exon7 c.C581T p.P194L TCCATCCGATGGC . PASS Atlas-SNP BBS12 166379 hgsc.bcm.edu 37 4 123664881 123664881 + Nonsense_Mutation SNP G G T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 91.0 5.0 94.0 0.0 0.0549451 0 . . none . BBS12 63 . NM_001178007 exon3 c.G1834T p.E612X TCATCAGAATTTG . PASS Atlas-SNP C10orf90 118611 hgsc.bcm.edu 37 10 128193433 128193433 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 98.0 39.0 115.0 0.0 0.397959 0 . . none C10orf90,NS,carcinoma,-1,1 C10orf90 121 1 NM_001004298 exon3 c.G336A p.P112P ATCTGACGGTGCC . PASS Atlas-SNP CACNA2D1 781 hgsc.bcm.edu 37 7 81601100 81601100 + Missense_Mutation SNP T T C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 330.0 70.0 259.0 0.0 0.212121 0 . . none . CACNA2D1 191 . NM_000722 exon26 c.A2134G p.K712E TATTTTTCTGCTT . PASS Atlas-SNP GBA 2629 hgsc.bcm.edu 37 1 155207245 155207245 + Nonsense_Mutation SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 160.0 49.0 221.0 0.0 0.30625 0 . . none GBA,NS,carcinoma,+1,1 GBA 46 1 NM_001005742 exon8 c.C886T p.R296X AGTCTCGCTGATG . PASS Atlas-SNP ADCYAP1R1 117 hgsc.bcm.edu 37 7 31132340 31132340 + Missense_Mutation SNP G G C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 40.0 27.0 48.0 0.0 0.675 0 . . none . ADCYAP1R1 78 . NM_001118 exon13 c.G1037C p.S346T AGTCCAGCATCTA . PASS Atlas-SNP BCL11B 64919 hgsc.bcm.edu 37 14 99642463 99642463 + Missense_Mutation SNP A A G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 43.0 14.0 35.0 0.0 0.325581 0 . . none . BCL11B 108 . NM_138576 exon4 c.T710C p.L237P TGCTGCAGCAGGA . PASS Atlas-SNP ZNF503 84858 hgsc.bcm.edu 37 10 77161102 77161102 + Missense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 18.0 9.0 31.0 0.0 0.5 0 . . none . ZNF503 25 . NM_032772 exon1 c.G76A p.G26S CACCGCCGCCTCC . PASS Atlas-SNP SLC22A23 63027 hgsc.bcm.edu 37 6 3284179 3284179 + Missense_Mutation SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 83.0 37.0 96.0 1.0 0.445783 0.0104167 . . none SLC22A23_ENST00000406686,NS,carcinoma,-1,2 SLC22A23 89 2 NM_015482 exon9 c.C1610T p.S537F GCGATGGAAAATT . scavenged Atlas-SNP SARDH 1757 hgsc.bcm.edu 37 9 136577806 136577806 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 24.0 11.0 34.0 0.0 0.458333 0 . . none . SARDH 112 . NM_007101 exon10 c.G1263A p.G421G CTCCTGCCCACAG . PASS Atlas-SNP PRR23C 389152 hgsc.bcm.edu 37 3 138762875 138762875 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 94.0 39.0 111.0 0.0 0.414894 0 . . none . PRR23C 31 . NM_001134657 exon1 c.G588A p.G196G ACAGGGCCCTCGG . PASS Atlas-SNP VCAN 1462 hgsc.bcm.edu 37 5 82834316 82834316 + Missense_Mutation SNP T T C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 89.0 34.0 122.0 0.0 0.382022 0 . . none . VCAN 498 . NM_004385 exon8 c.T5494C p.F1832L TCTGTCTTTATGG . PASS Atlas-SNP TLR2 7097 hgsc.bcm.edu 37 4 154625039 154625039 + Missense_Mutation SNP A A T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 109.0 41.0 99.0 0.0 0.376147 0 . . none TLR2,NS,lymphoid_neoplasm,0,3 TLR2 84 3 NM_003264 exon3 c.A980T p.D327V TTTATGATCTGAG . PASS Atlas-SNP RABL5 64792 hgsc.bcm.edu 37 7 100958542 100958542 + Missense_Mutation SNP T T G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 99.0 36.0 90.0 0.0 0.363636 0 . . none . RABL5 15 . NM_022777 exon5 c.A431C p.K144T ACCAGCTTCAGCT . PASS Atlas-SNP LPPR1 0 hgsc.bcm.edu 37 9 104079734 104079734 + Missense_Mutation SNP G G T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 134.0 41.0 108.0 0.0 0.30597 0 . . none . . . . NM_207299 exon7 c.G901T p.A301S CTAATGGCTTTCC . PASS Atlas-SNP AATK 9625 hgsc.bcm.edu 37 17 79098602 79098602 + Nonsense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 92.0 5.0 146.0 0.0 0.0543478 0 . . none . AATK 102 . NM_001080395 exon9 c.G887A p.W296X GCGATCCAGCGCA . PASS Atlas-SNP RPAP1 26015 hgsc.bcm.edu 37 15 41826971 41826971 + Missense_Mutation SNP A A G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 43.0 15.0 58.0 0.0 0.348837 0 . . none . RPAP1 111 . NM_015540 exon6 c.T704C p.L235P GCCTGCAGTCTTG . PASS Atlas-SNP MYC 4609 hgsc.bcm.edu 37 8 128750844 128750844 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 90.0 36.0 118.0 0.0 0.4 0 . . none . MYC 168 . NM_002467 exon2 c.C381T p.N127N GGTGAACCAGAGT . PASS Atlas-SNP C5orf47 133491 hgsc.bcm.edu 37 5 173416306 173416306 + Missense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 77.0 29.0 67.0 0.0 0.376623 0 . . none . C5orf47 14 . NM_001144954 exon1 c.C40T p.R14C TCGGCGCGCTTCG . PASS Atlas-SNP RECQL5 9400 hgsc.bcm.edu 37 17 73654377 73654377 + Splice_Site SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 55.0 18.0 60.0 0.0 0.327273 0 . . none . RECQL5 77 . NM_004259 exon8 c.1149+1G>A . GCCTTACCTGGAG . PASS Atlas-SNP NCOA3 8202 hgsc.bcm.edu 37 20 46279884 46279884 + Silent SNP A A G rs112355546 TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 61.0 4.0 68.0 0.0 0.0655738 0 A|0.500;G|0.500 0.500 weak . NCOA3 156 . NM_181659 exon20 c.A3810G p.Q1270Q ACAGCAACAGCAG . PASS Atlas-SNP AHNAK2 113146 hgsc.bcm.edu 37 14 105412163 105412163 + Missense_Mutation SNP C C G rs201181175 bycluster TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 105.0 6.0 134.0 2.0 0.0571429 0.0149254 . . weak AHNAK2_ENST00000333244,NS,carcinoma,0,1 AHNAK2 719 1 NM_138420 exon7 c.G9625C p.V3209L GCTTCACGTCCAC . scavenged Atlas-SNP TTN 7273 hgsc.bcm.edu 37 2 179400129 179400129 + Missense_Mutation SNP C C T rs192391568 by1000genomes TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 69.0 38.0 67.0 0.0 0.550725 0 C|1.000;T|0.000 0.000 strong . TTN 18412 . NM_001267550 exon358 c.G101213A p.R33738H CCTACACGGAGCC . PASS Atlas-SNP VWCE 220001 hgsc.bcm.edu 37 11 61048187 61048187 + Silent SNP G G A rs375996793 TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 67.0 34.0 64.0 0.0 0.507463 0 . . weak . VWCE 84 . NM_152718 exon9 c.C1233T p.D411D CTTCCCGTCCTAG . PASS Atlas-SNP CACNA1G 8913 hgsc.bcm.edu 37 17 48674136 48674136 + Missense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 37.0 13.0 39.0 0.0 0.351351 0 . . none . CACNA1G 659 . NM_001256360 exon16 c.C3110T p.P1037L TGCTGCCGCCTCT . PASS Atlas-SNP SPATA18 132671 hgsc.bcm.edu 37 4 52938302 52938302 + Missense_Mutation SNP G G T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 203.0 78.0 203.0 0.0 0.384236 0 . . none SPATA18_ENST00000295213,colon,carcinoma,+2,5 SPATA18 222 5 NM_145263 exon6 c.G738T p.E246D TGCTGAGAAAAGT . PASS Atlas-SNP EPHA5 2044 hgsc.bcm.edu 37 4 66467586 66467586 + Missense_Mutation SNP A A G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 110.0 39.0 102.0 0.0 0.354545 0 . . none EPHA5,colon,carcinoma,0,1 EPHA5 315 1 NM_004439 exon3 c.T683C p.V228A TAGTATACACGCA . PASS Atlas-SNP HIST1H2AE 3012 hgsc.bcm.edu 37 6 26217398 26217398 + Missense_Mutation SNP C C G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 124.0 52.0 127.0 0.0 0.419355 0 . . none . HIST1H2AE 25 . NM_021052 exon1 c.C196G p.L66V TTAGAGCTAGCTG . PASS Atlas-SNP MEP1A 4224 hgsc.bcm.edu 37 6 46766884 46766884 + Silent SNP G G T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 135.0 43.0 139.0 0.0 0.318519 0 . . none . MEP1A 93 . NM_005588 exon5 c.G228T p.T76T GTGGACGTTCCCC . PASS Atlas-SNP OR4D5 219875 hgsc.bcm.edu 37 11 123811056 123811056 + Missense_Mutation SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 139.0 35.0 75.0 0.0 0.251799 0 . . none . OR4D5 94 . NM_001001965 exon1 c.G733A p.A245T CACATTGCTGTGG . PASS Atlas-SNP B3GNT8 374907 hgsc.bcm.edu 37 19 41932420 41932420 + Silent SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 52.0 13.0 53.0 0.0 0.25 0 . . none . B3GNT8 20 . NM_198540 exon3 c.C264T p.S88S TTCAGTGCTGTCC . PASS Atlas-SNP ADAMTS3 9508 hgsc.bcm.edu 37 4 73205310 73205310 + Silent SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 108.0 41.0 88.0 0.0 0.37963 0 . . none . ADAMTS3 164 . NM_014243 exon5 c.C762T p.N254N GTAATCGTTTTCT . PASS Atlas-SNP KRT13 3860 hgsc.bcm.edu 37 17 39661359 39661359 + Silent SNP A A G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 58.0 20.0 75.0 0.0 0.344828 0 . . none . KRT13 72 . NM_002274 exon1 c.T444C p.P148P CCGCTCAGGGCTA . PASS Atlas-SNP BTG2 7832 hgsc.bcm.edu 37 1 203274847 203274847 + Missense_Mutation SNP T T G novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 95.0 38.0 119.0 0.0 0.4 0 . . none . BTG2 16 . NM_006763 exon1 c.T113G p.F38C AGGTCTTCAGCGG . PASS Atlas-SNP BAI3 577 hgsc.bcm.edu 37 6 70042873 70042873 + Missense_Mutation SNP T T C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 134.0 41.0 151.0 0.0 0.30597 0 . . none BAI3,NS,carcinoma,+1,2 BAI3 451 2 NM_001704 exon24 c.T3161C p.L1054P GAATCCTAGATAA . PASS Atlas-SNP ANKRD33 341405 hgsc.bcm.edu 37 12 52284586 52284586 + Missense_Mutation SNP C C T rs200291062 bycluster TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 44.0 19.0 42.0 0.0 0.431818 0 . . weak . ANKRD33 33 . NM_182608 exon5 c.C856T p.R286W CTAGAACGGCTGC . PASS Atlas-SNP CPXM2 119587 hgsc.bcm.edu 37 10 125557598 125557598 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 100.0 29.0 99.0 0.0 0.29 0 . . none . CPXM2 120 . NM_198148 exon6 c.G783A p.E261E GGGTAGCTCATTG . PASS Atlas-SNP PRDM1 639 hgsc.bcm.edu 37 6 106543518 106543518 + Missense_Mutation SNP T T A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 61.0 30.0 123.0 0.0 0.491803 0 . . none . PRDM1 195 . NM_001198 exon3 c.T320A p.I107K AATACATACCAAA . PASS Atlas-SNP PFN1 5216 hgsc.bcm.edu 37 17 4851557 4851557 + Splice_Site SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 23.0 10.0 34.0 0.0 0.434783 0 . . none . PFN1 6 . NM_005022 exon2 c.132+1G>A . GCAGTACCGTGAT . PASS Atlas-SNP AMBN 258 hgsc.bcm.edu 37 4 71468348 71468348 + Missense_Mutation SNP G G T rs199556863 bycluster TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 381.0 17.0 303.0 0.0 0.0446194 0 . . weak . AMBN 73 . NM_016519 exon7 c.G539T p.G180V TCCCAGGAGTAGA . PASS Atlas-SNP ABCA7 10347 hgsc.bcm.edu 37 19 1046827 1046827 + Missense_Mutation SNP T T C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 23.0 6.0 23.0 0.0 0.26087 0 . . none . ABCA7 174 . NM_019112 exon14 c.T1649C p.L550P GGTCGCTGCCGCT . PASS Atlas-SNP SEMA3C 10512 hgsc.bcm.edu 37 7 80433481 80433481 + Missense_Mutation SNP G G T rs143347984 TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 147.0 48.0 93.0 0.0 0.326531 0 G|1.000;T|0.000 0.000 weak . SEMA3C 106 . NM_006379 exon8 c.C742A p.L248M CAGTCAGTTTTTC . PASS Atlas-SNP SOX17 64321 hgsc.bcm.edu 37 8 55372347 55372347 + Missense_Mutation SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 18.0 9.0 32.0 0.0 0.5 0 . . none . SOX17 37 . NM_022454 exon2 c.C1037T p.T346M ACGGCACGGACCC . PASS Atlas-SNP TPO 7173 hgsc.bcm.edu 37 2 1459995 1459995 + Missense_Mutation SNP G G A rs371917329 TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 96.0 36.0 129.0 0.0 0.375 0 . . weak TPO,NS,carcinoma,-2,1 TPO 224 1 NM_175719 exon7 c.G760A p.G254R GCCTTCGGGGGAG . PASS Atlas-SNP CES5A 221223 hgsc.bcm.edu 37 16 55890347 55890347 + Missense_Mutation SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 60.0 42.0 48.0 0.0 0.7 0 . . none . CES5A 206 . NM_001190158 exon10 c.C1154T p.P385L ATCTCAGGAGCCT . PASS Atlas-SNP INTS3 65123 hgsc.bcm.edu 37 1 153719461 153719461 + Missense_Mutation SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 100.0 34.0 105.0 0.0 0.34 0 . . none . INTS3 83 . NM_023015 exon4 c.G347A p.R116H TGAGTCGTGATGG . PASS Atlas-SNP LGMN 5641 hgsc.bcm.edu 37 14 93171022 93171022 + Silent SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 125.0 8.0 119.0 0.0 0.064 0 . . none . LGMN 28 . NM_005606 exon13 c.C1222T p.L408L TGACCAGCACGTA . PASS Atlas-SNP OPRK1 4986 hgsc.bcm.edu 37 8 54142312 54142312 + Missense_Mutation SNP C C T rs186551684 bycluster;by1000genomes TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 122.0 41.0 125.0 0.0 0.336066 0 C|1.000;T|0.000 0.000 strong OPRK1,colon,carcinoma,0,1 OPRK1 90 1 NM_000912 exon4 c.G688A p.V230I TGAAGACGCAGAT . PASS Atlas-SNP SLC38A6 145389 hgsc.bcm.edu 37 14 61550378 61550378 + Missense_Mutation SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 24.0 15.0 47.0 0.0 0.625 0 . . none . SLC38A6 87 . NM_001172702 exon17 c.G1514A p.R505H CCAAACGTGTCCA . PASS Atlas-SNP MGAM 8972 hgsc.bcm.edu 37 7 141756637 141756637 + Silent SNP G G A rs181422456 bycluster;by1000genomes TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 69.0 15.0 58.0 0.0 0.217391 0 G|1.000;A|0.000 0.000 strong . MGAM 767 . NM_004668 exon30 c.G3588A p.T1196T TGTGACGTTCCAG . PASS Atlas-SNP PLEK 5341 hgsc.bcm.edu 37 2 68592512 68592512 + Missense_Mutation SNP A A T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 91.0 25.0 77.0 0.0 0.274725 0 . . none . PLEK 64 . NM_002664 exon1 c.A29T p.Y10F AGGGCTACCTTGT . PASS Atlas-SNP HOXD11 3237 hgsc.bcm.edu 37 2 176972104 176972104 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 124.0 34.0 100.0 0.0 0.274194 0 . . none . HOXD11 26 . NM_021192 exon1 c.C21T p.C7C CGAGTGCGGCCAG . PASS Atlas-SNP ZFHX4 79776 hgsc.bcm.edu 37 8 77690572 77690572 + Silent SNP T T C novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 80.0 29.0 74.0 0.0 0.3625 0 . . none . ZFHX4 878 . NM_024721 exon4 c.T3222C p.T1074T GCAGACTGAGGGC . PASS Atlas-SNP NWD1 284434 hgsc.bcm.edu 37 19 16860860 16860860 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 82.0 22.0 84.0 0.0 0.268293 0 . . none NWD1_ENST00000524140,NS,neuroblastoma,+2,2 NWD1 303 2 NM_001007525 exon6 c.C1407T p.C469C AGCTTGCTCGGGG . PASS Atlas-SNP CHRNA3 1136 hgsc.bcm.edu 37 15 78894447 78894447 + Silent SNP G G A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 107.0 38.0 123.0 0.0 0.35514 0 . . none . CHRNA3 56 . NM_000743 exon5 c.C537T p.S179S GGACCAGGAACCG . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu 37 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 88.0 6.0 84.0 0.0 0.0681818 0 . . none . KIF1A 152 . NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . PASS Atlas-SNP MYT1 4661 hgsc.bcm.edu 37 20 62839368 62839368 + Missense_Mutation SNP G G T rs369047925 alternate_allele TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 22.0 4.0 28.0 0.0 0.181818 0 . . alt MYT1,NS,carcinoma,0,1 MYT1 152 1 NM_004535 exon7 c.G819T p.E273D GGAGGAGGATGAA . scavenged Atlas-SNP MOCS3 27304 hgsc.bcm.edu 37 20 49575719 49575719 + Missense_Mutation SNP T T A novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 51.0 17.0 62.0 0.0 0.333333 0 . . none . MOCS3 44 . NM_014484 exon1 c.T340A p.Y114N GTGGACTATGACG . PASS Atlas-SNP KIAA2018 205717 hgsc.bcm.edu 37 3 113376116 113376116 + Silent SNP C C T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 28.0 10.0 36.0 0.0 0.357143 0 . . none . KIAA2018 180 . NM_001009899 exon7 c.G4413A p.Q1471Q TTGCTGCTGCTGC . PASS Atlas-SNP CD79A 973 hgsc.bcm.edu 37 19 42384803 42384803 + Nonsense_Mutation SNP G G T novel TCGA-FA-A4XK-01A-11D-A31X-10 TCGA-FA-A4XK-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1c24a152-3311-444f-bda2-4612303ddc50 cbaae798-7a40-44d1-b164-ebf0f6a2b8fa 51.0 20.0 78.0 0.0 0.392157 0 . . none . CD79A 25 . NM_001783 exon4 c.G565T p.E189X CTTTATGAAGTGA . PASS Atlas-SNP