Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
LZTS2	84445	broad.mit.edu	36	10	102752392	102752392	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032429	exon2	c.G107C	p.R36P	.	.	.
LZTS2	84445	broad.mit.edu	36	10	102753697	102753697	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032429	exon3	c.C852A	p.S284S	.	.	.
CDNF	441549	broad.mit.edu	36	10	14902131	14902131	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029954	exon4	c.C418T	p.R140W	.	.	.
AKR1C2	1646	broad.mit.edu	36	10	5033831	5033831	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205845	exon3	c.G127T	p.E43X	.	.	.
AKR1CL1	340811	broad.mit.edu	36	10	5193844	5193844	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
OR52R1	119695	broad.mit.edu	36	11	4781757	4781757	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005177	exon1	c.G430C	p.V144L	.	.	.
OR4S1	256148	broad.mit.edu	36	11	48284559	48284559	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004725	exon1	c.G209T	p.C70F	.	.	.
ATG2A	23130	broad.mit.edu	36	11	64436217	64436217	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015104	exon8	c.A1003C	p.N335H	.	.	.
TPP1	1200	broad.mit.edu	36	11	6595174	6595174	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000391	exon5	c.A442G	p.T148A	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7906189	7906189	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004461	exon1	c.A597C	p.A199A	.	.	.
KSR2	283455	broad.mit.edu	36	12	116504494	116504494	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173598	exon6	c.A1138G	p.N380D	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120366292	120366293	+	Missense_Mutation	DNP	GG	CT	CT	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032590	exon16	c.2356_2357AG	.	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122969393	122969393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207437	exon64	c.G11096A	p.R3699H	.	.	.
NCKAP5L	57701	broad.mit.edu	36	12	48471994	48471994	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037806	exon13	c.C3900T	p.A1300A	.	.	.
CELA1	1990	broad.mit.edu	36	12	50021393	50021393	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001971	exon5	c.C365G	p.T122S	.	.	.
RASSF9	9182	broad.mit.edu	36	12	84723265	84723265	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005447	exon2	c.C654T	p.F218F	.	.	.
CLEC6A	93978	broad.mit.edu	36	12	8509428	8509428	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007033	exon4	c.A305T	p.K102M	.	.	.
NR2C1	7181	broad.mit.edu	36	12	93946309	93946310	+	Missense_Mutation	DNP	CT	TG	TG	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003297	exon12	c.1515_1516CA	.	.	.	.
ARHGEF7	8874	broad.mit.edu	36	13	110717928	110717928	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001113512	exon8	c.G896C	p.C299S	.	.	.
GRK1	6011	broad.mit.edu	36	13	113369906	113369906	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002929	exon1	c.C204T	p.G68G	.	.	.
KL	9365	broad.mit.edu	36	13	32533088	32533088	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004795	exon4	c.C1872T	p.S624S	.	.	.
NBEA	26960	broad.mit.edu	36	13	34631719	34631719	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015678	exon22	c.A3411T	p.E1137D	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60884877	60884877	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022843	exon2	c.G1356A	p.A452A	.	.	.
DIS3	22894	broad.mit.edu	36	13	72244021	72244021	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128226	exon11	c.T1428A	p.I476I	.	.	.
POU4F1	5457	broad.mit.edu	36	13	78073560	78073560	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006237	exon2	c.C1251A	p.A417A	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95306428	95306428	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020121	exon34	c.T3993G	p.F1331L	.	.	.
OR10G2	26534	broad.mit.edu	36	14	21172138	21172138	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005466	exon1	c.G701T	p.R234L	.	.	.
MYH7	4625	broad.mit.edu	36	14	22962698	22962698	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000257	exon24	c.G2997T	p.L999L	.	.	.
DHRS4L1	728635	broad.mit.edu	36	14	23576950	23576950	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001082488	exon2	c.G287C	p.W96S	.	.	.
CIDEB	27141	broad.mit.edu	36	14	23846537	23846537	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014430	exon4	c.G66A	p.E22E	.	.	.
ABHD12B	145447	broad.mit.edu	36	14	50422106	50422106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181814	exon4	c.G280A	p.V94I	.	.	.
NID2	22795	broad.mit.edu	36	14	51579276	51579276	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007361	exon6	c.G1553A	p.G518E	.	.	.
ZBTB25	7597	broad.mit.edu	36	14	64024316	64024316	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006977	exon3	c.A386G	p.Y129C	.	.	.
OR4F6	390648	broad.mit.edu	36	15	100163504	100163504	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005326	exon1	c.C59T	p.S20L	.	.	.
TEX9	374618	broad.mit.edu	36	15	54474187	54474187	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198524	exon9	c.A691C	p.N231H	.	.	.
FEM1B	10116	broad.mit.edu	36	15	66370613	66370613	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015322	exon2	c.A1863G	p.E621E	.	.	.
SULT1A1	6817	broad.mit.edu	36	16	28527423	28527423	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177529	exon3	c.A151T	p.T51S	.	.	.
ZNF48	197407	broad.mit.edu	36	16	30317017	30317017	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152652	exon2	c.A945C	p.G315G	.	.	.
ZNF213	7760	broad.mit.edu	36	16	3131294	3131294	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134655	exon6	c.C1325T	p.A442V	.	.	.
GPR56	9289	broad.mit.edu	36	16	56242932	56242932	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145774	exon4	c.C384G	p.S128R	.	.	.
ZCCHC14	23174	broad.mit.edu	36	16	86008745	86008745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015144	exon8	c.C794T	p.A265V	.	.	.
JPH3	57338	broad.mit.edu	36	16	86235639	86235639	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020655	exon2	c.G657C	p.L219L	.	.	.
TAF1C	9013	broad.mit.edu	36	16	82770543	82770543	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	-	T	-	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139353	exon15	c.1833delA	p.P611fs	.	.	.
EPN2	22905	broad.mit.edu	36	17	19178021	19178021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014964	exon11	c.C1787T	p.A596V	.	.	.
SUZ12	23512	broad.mit.edu	36	17	27291444	27291444	+	Nonsense_Mutation	SNP	C	T	T	rs2627175	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015355	exon2	c.C301T	p.R101X	.	.	.
SUZ12	23512	broad.mit.edu	36	17	27327685	27327685	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015355	exon8	c.C856T	p.R286X	.	.	.
TOP2A	7153	broad.mit.edu	36	17	35808849	35808849	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001067	exon25	c.C3257A	p.P1086H	.	.	.
KLHL10	317719	broad.mit.edu	36	17	37251994	37251994	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152467	exon2	c.T588C	p.N196N	.	.	.
HSPB9	94086	broad.mit.edu	36	17	37528674	37528674	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033194	exon1	c.A280T	p.S94C	.	.	.
NBR1	4077	broad.mit.edu	36	17	38595175	38595175	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005899	exon8	c.G525T	p.Q175H	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59372955	59372955	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000334	exon24	c.C4419T	p.F1473F	.	.	.
CACNG5	27091	broad.mit.edu	36	17	62307213	62307213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014404	exon3	c.G361A	p.G121R	.	.	.
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C817T	p.R273C	 TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.
NPTX1	4884	broad.mit.edu	36	17	76061831	76061831	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002522	exon3	c.G661T	p.D221Y	.	.	.
RAB31	11031	broad.mit.edu	36	18	9849309	9849309	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006868	exon7	c.G575A	p.R192H	.	.	.
PPM1N	147699	broad.mit.edu	36	19	50694302	50694303	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080401	exon1	c.732_733insC	p.R244fs	.	.	.
CHERP	10523	broad.mit.edu	36	19	16502687	16502687	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006387	exon6	c.C679A	p.R227S	.	.	.
COPE	11316	broad.mit.edu	36	19	18891105	18891105	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007263	exon1	c.A53G	p.E18G	.	.	.
DYRK1B	9149	broad.mit.edu	36	19	45008564	45008564	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006483	exon11	c.C1401T	p.V467V	.	.	.
GRIK5	2901	broad.mit.edu	36	19	47255492	47255492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002088	exon5	c.G536A	p.R179H	.	.	.
PPFIA3	8541	broad.mit.edu	36	19	54343247	54343247	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003660	exon24	c.G2931A	p.S977S	.	.	.
LILRA3	11026	broad.mit.edu	36	19	59494441	59494441	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006865	exon5	c.G812A	p.R271Q	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018464	62018464	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146186	exon7	c.A3158T	p.Y1053F	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201289633	201289634	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015053	exon2	c.232_233insC	p.S78fs	.	.	.
CLCC1	23155	broad.mit.edu	36	1	109281459	109281459	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001048210	exon10	c.G1146A	p.Q382Q	.	.	.
PTCHD2	57540	broad.mit.edu	36	1	11502019	11502019	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020780	exon8	c.G1910A	p.R637Q	.	.	.
PLOD1	5351	broad.mit.edu	36	1	11957375	11957375	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000302	exon19	c.C2107G	p.R703G	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152175827	152175827	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014856	exon16	c.A2254T	p.M752L	.	.	.
AQP10	89872	broad.mit.edu	36	1	152562876	152562876	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080429	exon5	c.A677T	p.Y226F	.	.	.
SCAMP3	10067	broad.mit.edu	36	1	153498142	153498142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005698	exon2	c.C74T	p.A25V	.	.	.
VANGL2	57216	broad.mit.edu	36	1	158652483	158652483	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020335	exon3	c.C79T	p.R27W	.	.	.
TNN	63923	broad.mit.edu	36	1	173334185	173334185	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022093	exon9	c.C1950T	p.Y650Y	.	.	.
LHX9	56956	broad.mit.edu	36	1	196153636	196153636	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020204	exon1	c.G60C	p.M20I	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231201703	231201703	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014801	exon31	c.G5374C	p.E1792Q	.	.	.
RYR2	6262	broad.mit.edu	36	1	236061454	236061454	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon104	c.T14774C	p.L4925P	.	.	.
HCRTR1	3061	broad.mit.edu	36	1	31863306	31863306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001525	exon8	c.G1087A	p.G363S	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42883001	42883001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080850	exon13	c.G1826A	p.R609H	.	.	.
CPT2	1376	broad.mit.edu	36	1	53449387	53449387	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000098	exon4	c.A1453G	p.T485A	.	.	.
FAM83C	128876	broad.mit.edu	36	20	33343118	33343118	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178468	exon1	c.T404G	p.V135G	.	.	.
PLTP	5360	broad.mit.edu	36	20	43967107	43967107	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006227	exon9	c.C763A	p.P255T	.	.	.
MOCS3	27304	broad.mit.edu	36	20	49009105	49009105	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014484	exon1	c.G319C	p.G107R	.	.	.
PMEPA1	56937	broad.mit.edu	36	20	55660827	55660827	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199169	exon4	c.C447T	p.R149R	.	.	.
ADAMTS1	9510	broad.mit.edu	36	21	27135243	27135243	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006988	exon4	c.G1323A	p.Q441Q	.	.	.
GART	2618	broad.mit.edu	36	21	33819153	33819153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136006	exon11	c.G1091A	p.G364E	.	.	.
KRTAP10-7	386675	broad.mit.edu	36	21	44845614	44845614	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198689	exon2	c.C650A	p.A217D	.	.	.
C21orf70	85395	broad.mit.edu	36	21	45188101	45188101	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_058190	exon2	c.G204T	p.E68D	.	.	.
RGL4	266747	broad.mit.edu	36	22	22364242	22364242	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153615	exon1	c.C25G	p.P9A	.	.	.
BAIAP2L2	80115	broad.mit.edu	36	22	36824063	36824063	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025045	exon6	c.C418T	p.L140L	.	.	.
TUBA3E	112714	broad.mit.edu	36	2	130665965	130665965	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207312	exon5	c.C1262A	p.A421D	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137589245	137589245	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080427	exon4	c.G1188A	p.T396T	.	.	.
TTC30A	92104	broad.mit.edu	36	2	178189742	178189742	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152275	exon1	c.C1934G	p.T645R	.	.	.
ITGAV	3685	broad.mit.edu	36	2	187163452	187163452	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002210	exon1	c.T142A	p.Y48N	.	.	.
CALCRL	10203	broad.mit.edu	36	2	187919330	187919330	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005795	exon15	c.C1212A	p.I404I	.	.	.
KCTD18	130535	broad.mit.edu	36	2	201079869	201079869	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152387	exon2	c.C116T	p.A39V	.	.	.
MAP2	4133	broad.mit.edu	36	2	210251557	210251557	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031847	exon5	c.G279A	p.R93R	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155428	226155428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020864	exon4	c.G1051A	p.D351N	.	.	.
IRS1	3667	broad.mit.edu	36	2	227368086	227368086	+	Missense_Mutation	SNP	G	C	C	rs72319584	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005544	exon1	c.C3613G	p.P1205A	.	.	.
UGT1A5	54579	broad.mit.edu	36	2	234340546	234340546	+	Missense_Mutation	SNP	A	C	C	rs72551348	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001072	exon2	c.A989C	p.Q330P	.	.	.
LRRFIP1	9208	broad.mit.edu	36	2	238336693	238336693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001137552	exon11	c.C1598T	p.T533I	.	.	.
C2orf79	391356	broad.mit.edu	36	2	24869629	24869629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013663	exon1	c.C122T	p.S41F	.	.	.
SIX3	6496	broad.mit.edu	36	2	45022847	45022847	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005413	exon1	c.G100C	p.G34R	.	.	.
SIX2	10736	broad.mit.edu	36	2	45086936	45086936	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016932	exon2	c.C753A	p.G251G	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73571535	73571535	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015120	exon10	c.A8938G	p.N2980D	.	.	.
PLA1A	51365	broad.mit.edu	36	3	120830954	120830954	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015900	exon11	c.C1320T	p.N440N	.	.	.
IQCB1	9657	broad.mit.edu	36	3	122983386	122983386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001023570	exon13	c.G1304A	p.R435H	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1390751	1390751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014461	exon16	c.G2089T	p.A697S	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139675871	139675871	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031913	exon20	c.C2455T	p.L819L	.	.	.
ATR	545	broad.mit.edu	36	3	143697961	143697961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184	exon34	c.C5830T	p.L1944F	.	.	.
CHST2	9435	broad.mit.edu	36	3	144323662	144323662	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004267	exon2	c.A1314T	p.R438S	.	.	.
PLCD1	5333	broad.mit.edu	36	3	38024602	38024602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006225	exon14	c.G2092A	p.A698T	.	.	.
MST1	4485	broad.mit.edu	36	3	49696610	49696610	+	Missense_Mutation	SNP	G	A	A	rs11545933	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020998	exon18	c.C2033T	p.P678L	.	.	.
IL17RE	132014	broad.mit.edu	36	3	9919641	9919641	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153480	exon1	c.C25T	p.L9L	.	.	.
TLL1	7092	broad.mit.edu	36	4	167239972	167239972	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012464	exon20	c.G2750T	p.C917F	.	.	.
FIP1L1	81608	broad.mit.edu	36	4	53989026	53989026	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030917	exon13	c.C1093A	p.P365T	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140162222	140162222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031497	exon1	c.C1256T	p.S419L	.	.	.
PCDHGA9	56107	broad.mit.edu	36	5	140763155	140763155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018921	exon1	c.G452A	p.R151H	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140772972	140772972	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032090	exon1	c.G46A	p.G16R	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32110001	32110001	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178140	exon17	c.G3032T	p.G1011V	.	.	.
IRX1	79192	broad.mit.edu	36	5	3652676	3652676	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024337	exon2	c.T614A	p.L205H	.	.	.
EMB	133418	broad.mit.edu	36	5	49742816	49742816	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198449	exon3	c.A355T	p.T119S	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109401358	109401358	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032131	exon18	c.G2552C	p.R851P	.	.	.
THBS2	7058	broad.mit.edu	36	6	169390871	169390871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003247	exon4	c.C175T	p.R59C	.	.	.
DEFB112	245915	broad.mit.edu	36	6	50124252	50124252	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037498	exon1	c.A72C	p.T24T	.	.	.
TINAG	27283	broad.mit.edu	36	6	54281402	54281402	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014464	exon1	c.A95C	p.E32A	.	.	.
EXOC2	55770	broad.mit.edu	36	6	564449	564449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018303	exon5	c.G517A	p.E173K	.	.	.
MDN1	23195	broad.mit.edu	36	6	90543114	90543114	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014611	exon12	c.A1747T	p.M583L	.	.	.
CDHR3	222256	broad.mit.edu	36	7	105411945	105411945	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152750	exon4	c.G487T	p.D163Y	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107386977	107386977	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002291	exon20	c.G2643T	p.G881G	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111174656	111174656	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014705	exon42	c.G4469C	p.C1490S	.	.	.
SCIN	85477	broad.mit.edu	36	7	12658835	12658835	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001112706	exon16	c.G2118C	p.W706C	.	.	.
MGAM	8972	broad.mit.edu	36	7	141404570	141404570	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004668	exon31	c.T3792C	p.D1264D	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142280325	142280325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018646	exon14	c.G1817A	p.R606Q	.	.	.
SPDYE1	285955	broad.mit.edu	36	7	44013459	44013459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	A	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175064	exon5	c.G700A	p.G234R	.	.	.
CYP3A5	1577	broad.mit.edu	36	7	99085732	99085732	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000777	exon12	c.C1313A	p.P438H	.	.	.
TG	7038	broad.mit.edu	36	8	134054165	134054165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003235	exon34	c.C6196T	p.P2066S	.	.	.
SLC45A4	57210	broad.mit.edu	36	8	142297678	142297678	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080431	exon4	c.C1090A	p.R364R	.	.	.
EFHA2	286097	broad.mit.edu	36	8	17007442	17007442	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181723	exon11	c.G1235A	p.R412H	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39726084	39726084	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001464	exon18	c.T1918G	p.L640V	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103489108	103489108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133445	exon2	c.G895A	p.A299T	.	.	.
OR2K2	26248	broad.mit.edu	36	9	113130348	113130348	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205859	exon1	c.C187A	p.L63I	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116306420	116306420	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015404	exon1	c.G483A	p.E161E	.	.	.
SLC24A2	25769	broad.mit.edu	36	9	19518054	19518054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020344	exon9	c.C1562T	p.A521V	.	.	.
CXorf40A	91966	broad.mit.edu	36	X	148436389	148436389	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171907	exon5	c.G453T	p.L151L	.	.	.
GPKOW	27238	broad.mit.edu	36	X	48857751	48857751	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015698	exon10	c.G1280A	p.G427D	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86659807	86659807	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057162	exon1	c.G255T	p.Q85H	.	.	.