Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
UPF2	26019	broad.mit.edu	36	10	12046087	12046087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080599	exon11	c.G2111T	p.C704F	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	67396390	67396390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013266	exon17	c.C2386A	p.L796I	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7452315	7452315	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029880	exon3	c.C129A	p.G43G	.	.	.
TCIRG1	10312	broad.mit.edu	36	11	67569051	67569052	+	De_novo_Start_OutOfFrame	INS	-	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006019	exon10	c.1071_1072insC	p.M357fs	.	.	.
EPS8L2	64787	broad.mit.edu	36	11	711654	711655	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022772	exon10	c.858_859insA	p.R286fs	.	.	.
ATM	472	broad.mit.edu	36	11	107711791	107711791	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000051	exon56	c.G8161A	p.D2721N	.	.	.
OR5D16	390144	broad.mit.edu	36	11	55363551	55363551	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005496	exon1	c.A748G	p.I250V	.	.	.
OSBP	5007	broad.mit.edu	36	11	59102342	59102342	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002556	exon12	c.A1916C	p.H639P	.	.	.
HRASLS5	117245	broad.mit.edu	36	11	62990168	62990168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_054108	exon5	c.G737A	p.R246Q	.	.	.
SF1	7536	broad.mit.edu	36	11	64293317	64293317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201998	exon7	c.C733T	p.R245W	.	.	.
FAT3	120114	broad.mit.edu	36	11	92230041	92230041	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008781	exon19	c.G11379A	p.P3793P	.	.	.
ACACB	32	broad.mit.edu	36	12	108145021	108145021	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001093	exon25	c.T3713G	p.L1238R	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121430872	121430872	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198240	exon2	c.G81A	p.T27T	.	.	.
HIP1R	9026	broad.mit.edu	36	12	121911979	121911979	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003959	exon31	c.C3124T	p.Q1042X	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
ALG10B	144245	broad.mit.edu	36	12	37001271	37001271	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013620	exon3	c.T1411G	p.F471V	.	.	.
PUS7L	83448	broad.mit.edu	36	12	42435105	42435105	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098615	exon2	c.C211G	p.P71A	.	.	.
CD63	967	broad.mit.edu	36	12	54406257	54406257	+	Missense_Mutation	SNP	G	A	A	rs11574657	byHapMap	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001780	exon6	c.C482T	p.S161L	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28969429	28969429	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001033602	exon11	c.C3664T	p.R1222C	.	.	.
TDRD3	81550	broad.mit.edu	36	13	60007250	60007250	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146071	exon12	c.G1721A	p.R574Q	.	.	.
SCEL	8796	broad.mit.edu	36	13	77114903	77114903	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160706	exon30	c.G1883T	p.R628I	.	.	.
TDRD9	122402	broad.mit.edu	36	14	103560724	103560724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153046	exon25	c.G2672A	p.R891K	.	.	.
IPO4	79711	broad.mit.edu	36	14	23723378	23723378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024658	exon17	c.G1723A	p.D575N	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32361382	32361382	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004274	exon13	c.C4612T	p.R1538C	.	.	.
VRTN	55237	broad.mit.edu	36	14	73893303	73893303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018228	exon2	c.G64A	p.E22K	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22473901	22473901	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018958	exon1	c.C1794A	p.S598R	.	.	.
HS3ST4	9951	broad.mit.edu	36	16	26054846	26054846	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006040	exon2	c.G1147C	p.E383Q	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48116854	48116854	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015069	exon7	c.G3630A	p.P1210P	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57172860	57172860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206999	exon11	c.C1105T	p.R369C	.	.	.
CDH11	1009	broad.mit.edu	36	16	63563069	63563069	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001797	exon11	c.A1556G	p.D519G	.	.	.
SMPD3	55512	broad.mit.edu	36	16	66962449	66962449	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018667	exon3	c.C1137T	p.H379H	.	.	.
KCNG4	93107	broad.mit.edu	36	16	82828233	82828233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172347	exon2	c.C360T	p.F120F	.	.	.
TANC2	26115	broad.mit.edu	36	17	58853030	58853030	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025185	exon25	c.C5955T	p.F1985F	.	.	.
PITPNC1	26207	broad.mit.edu	36	17	62959505	62959505	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012417	exon2	c.C174T	p.T58T	.	.	.
CCDC40	55036	broad.mit.edu	36	17	75673250	75673250	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017950	exon13	c.C2103T	p.D701D	.	.	.
ARHGEF15	22899	broad.mit.edu	36	17	8156116	8156116	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173728	exon2	c.C34T	p.P12S	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2687978	2687978	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015295	exon10	c.C1281G	p.I427M	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70904198	70904198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017757	exon8	c.G5533A	p.V1845I	.	.	.
CYP4F8	11283	broad.mit.edu	36	19	15600612	15600612	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007253	exon12	c.G1355A	p.R452K	.	.	.
APOE	348	broad.mit.edu	36	19	50102941	50102941	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000041	exon3	c.G128T	p.R43L	.	.	.
CD33	945	broad.mit.edu	36	19	56420433	56420433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001772	exon2	c.G185A	p.R62Q	.	.	.
PEG3	5178	broad.mit.edu	36	19	62020639	62020639	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146186	exon7	c.C983A	p.S328X	.	.	.
PLEKHO1	51177	broad.mit.edu	36	1	148389854	148389854	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016274	exon2	c.C159G	p.L53L	.	.	.
RXFP4	339403	broad.mit.edu	36	1	154178957	154178957	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181885	exon1	c.C833G	p.P278R	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158357612	158357612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000702	exon3	c.C124A	p.H42N	.	.	.
CFH	3075	broad.mit.edu	36	1	194981614	194981614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000186	exon21	c.G3355A	p.D1119N	.	.	.
TRAF5	7188	broad.mit.edu	36	1	209599989	209599989	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004619	exon5	c.G491T	p.R164L	.	.	.
EPHX1	2052	broad.mit.edu	36	1	224099526	224099526	+	Missense_Mutation	SNP	C	A	A	rs45495897	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136018	exon9	c.C1223A	p.T408K	.	.	.
RYR2	6262	broad.mit.edu	36	1	235879983	235879983	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon50	c.C7696T	p.R2566W	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20226871	20226871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015585	exon25	c.G3263A	p.R1088Q	.	.	.
EYA2	2139	broad.mit.edu	36	20	45134278	45134278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172110	exon6	c.G463A	p.G155S	.	.	.
WDR4	10785	broad.mit.edu	36	21	43143371	43143371	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033661	exon11	c.G1096A	p.D366N	.	.	.
KRTAP10-12	386685	broad.mit.edu	36	21	44942239	44942239	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198699	exon1	c.G695T	p.G232V	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	38992306	38992306	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015088	exon5	c.G2126A	p.W709X	.	.	.
HIRA	7290	broad.mit.edu	36	22	17729279	17729280	+	Frame_Shift_Del	DEL	GA	-	-	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003325	exon16	c.1950_1951del	p.650_651del	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140824963	140824963	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon77	c.G11765T	p.R3922I	.	.	.
TTN	7273	broad.mit.edu	36	2	179110072	179110072	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon184	c.C72814A	p.L24272M	.	.	.
HECW2	57520	broad.mit.edu	36	2	196865569	196865569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020760	exon14	c.C2965T	p.R989W	.	.	.
MPP4	58538	broad.mit.edu	36	2	202223095	202223095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033066	exon19	c.C1420T	p.R474C	.	.	.
RPE	6120	broad.mit.edu	36	2	210590523	210590523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199229	exon5	c.G559A	p.A187T	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215618888	215618888	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173076	exon7	c.C790A	p.Q264K	.	.	.
SCG2	7857	broad.mit.edu	36	2	224170816	224170816	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003469	exon2	c.C1429A	p.Q477K	.	.	.
MLPH	79083	broad.mit.edu	36	2	238125743	238125743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042467	exon14	c.G1616A	p.R539Q	.	.	.
SPDYA	245711	broad.mit.edu	36	2	28926295	28926295	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182756	exon8	c.C926T	p.T309I	.	.	.
VIT	5212	broad.mit.edu	36	2	36864001	36864001	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001177969	exon10	c.G817T	p.E273X	.	.	.
MEIS1	4211	broad.mit.edu	36	2	66592846	66592846	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002398	exon8	c.G804T	p.K268N	.	.	.
AFF3	3899	broad.mit.edu	36	2	99991797	99991797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001025108	exon4	c.G158A	p.R53Q	.	.	.
SLC6A11	6538	broad.mit.edu	36	3	10935056	10935056	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014229	exon8	c.C1038T	p.F346F	.	.	.
PDIA5	10954	broad.mit.edu	36	3	124293964	124293964	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006810	exon3	c.G242T	p.C81F	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131794630	131794630	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102608	exon15	c.C4407T	p.N1469N	.	.	.
IFT80	57560	broad.mit.edu	36	3	161479679	161479679	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190242	exon15	c.T1421C	p.V474A	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	 PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.
USP13	8975	broad.mit.edu	36	3	180909284	180909284	+	Missense_Mutation	SNP	G	A	A	rs61760204	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003940	exon6	c.G650A	p.R217Q	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184477427	184477427	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015078	exon15	c.T1789G	p.F597V	.	.	.
CHRD	8646	broad.mit.edu	36	3	185585677	185585677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003741	exon14	c.C1775T	p.T592M	.	.	.
ZNF620	253639	broad.mit.edu	36	3	40533155	40533155	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175888	exon5	c.C1066T	p.R356X	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4723024	4723024	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099952	exon37	c.G4804A	p.E1602K	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64594503	64594503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182920	exon13	c.G1949A	p.R650Q	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77754199	77754199	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001128929	exon22	c.A3627C	p.R1209S	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147780731	147780731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004575	exon2	c.C551T	p.P184L	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72582237	72582237	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134742	exon16	c.G2130T	p.L710L	.	.	.
C4orf37	285555	broad.mit.edu	36	4	98981001	98981001	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_174952	exon9	c.G1150T	p.A384S	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109093028	109093028	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002372	exon4	c.C622T	p.R208W	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140735930	140735930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032086	exon1	c.C2096T	p.A699V	.	.	.
TRIO	7204	broad.mit.edu	36	5	14561455	14561455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007118	exon57	c.G9218A	p.R3073H	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	146999405	146999405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014790	exon10	c.G1513A	p.A505T	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153058722	153058722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114183	exon10	c.G1348A	p.V450M	.	.	.
STK10	6793	broad.mit.edu	36	5	171453329	171453329	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005990	exon9	c.G1246A	p.V416M	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178487675	178487675	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014244	exon17	c.C2508A	p.I836I	.	.	.
C5orf51	285636	broad.mit.edu	36	5	41940243	41940243	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175921	exon1	c.C17G	p.S6C	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5518319	5518319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015325	exon13	c.G5872A	p.E1958K	.	.	.
XRCC4	7518	broad.mit.edu	36	5	82527409	82527409	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022406	exon4	c.380delT	p.I127fs	.	.	.
PHACTR2	9749	broad.mit.edu	36	6	144123259	144123259	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100164	exon5	c.G483A	p.P161P	.	.	.
UTRN	7402	broad.mit.edu	36	6	145152045	145152045	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007124	exon61	c.G8857T	p.V2953L	.	.	.
PLEKHG1	57480	broad.mit.edu	36	6	151193691	151193691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029884	exon16	c.G1751A	p.R584H	.	.	.
FKSG83	83954	broad.mit.edu	36	6	27401249	27401249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032030	exon1	c.C209T	p.T70M	.	.	.
GJA10	84694	broad.mit.edu	36	6	90662530	90662530	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032602	exon1	c.T1622G	p.F541C	.	.	.
GSTM2P1	442245	broad.mit.edu	36	6	111475075	111475076	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TFR2	7036	broad.mit.edu	36	7	100056577	100056577	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003227	exon18	c.C2245T	p.R749W	.	.	.
CPA5	93979	broad.mit.edu	36	7	129789561	129789561	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127441	exon9	c.G581T	p.G194V	.	.	.
NUP205	23165	broad.mit.edu	36	7	134954794	134954794	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015135	exon29	c.C4047T	p.A1349A	.	.	.
NOBOX	135935	broad.mit.edu	36	7	143729306	143729306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080413	exon2	c.G355A	p.G119R	.	.	.
FERD3L	222894	broad.mit.edu	36	7	19151185	19151185	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152898	exon1	c.G326A	p.R109H	.	.	.
STK31	56164	broad.mit.edu	36	7	23735365	23735365	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001122833	exon6	c.C386A	p.S129Y	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48399340	48399340	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152701	exon35	c.C11468T	p.T3823M	.	.	.
PCLO	27445	broad.mit.edu	36	7	82423619	82423619	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033026	exon5	c.G4586T	p.R1529L	.	.	.
ABCB1	5243	broad.mit.edu	36	7	87006552	87006552	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000927	exon20	c.C2365T	p.R789X	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116686262	116686262	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014112	exon4	c.C1109A	p.T370N	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139279040	139279040	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015912	exon8	c.C724T	p.R242X	.	.	.
KLF4	9314	broad.mit.edu	36	9	109289576	109289577	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004235	exon3	c.920_921insC	p.L307fs	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118228105	118228105	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198186	exon8	c.G1169A	p.R390H	.	.	.
TTLL11	158135	broad.mit.edu	36	9	123791748	123791748	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001139442	exon4	c.G1086A	p.G362G	.	.	.
EXD3	54932	broad.mit.edu	36	9	139366472	139366472	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017820	exon12	c.C1040A	p.A347E	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37511757	37511757	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012166	exon8	c.T2009A	p.L670Q	.	.	.
GCNT1	2650	broad.mit.edu	36	9	78307208	78307208	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001097635	exon3	c.G91A	p.V31I	.	.	.
HTR2C	3358	broad.mit.edu	36	X	114047720	114047720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000868	exon6	c.G863A	p.R288Q	.	.	.
AFF2	2334	broad.mit.edu	36	X	147847612	147847612	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002025	exon12	c.G2614A	p.E872K	.	.	.
SCML2	10389	broad.mit.edu	36	X	18248415	18248415	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006089	exon6	c.A444G	p.T148T	.	.	.
XG	7499	broad.mit.edu	36	X	2739397	2739397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001141919	exon10	c.G475A	p.V159M	.	.	.
MAGEB4	4115	broad.mit.edu	36	X	30170217	30170217	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002367	exon1	c.G44A	p.R15H	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3250326	3250326	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015419	exon5	c.C3400A	p.Q1134K	.	.	.
FUNDC1	139341	broad.mit.edu	36	X	44271495	44271495	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173794	exon4	c.A322G	p.K108E	.	.	.
ZDHHC15	158866	broad.mit.edu	36	X	74587455	74587455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146256	exon3	c.C259T	p.R87C	.	.	.
VCX	26609	broad.mit.edu	36	X	7771919	7771919	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013452	exon3	c.G483A	p.E161E	.	.	.
DACH2	117154	broad.mit.edu	36	X	85956476	85956476	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053281	exon10	c.G1667T	p.G556V	.	.	.
TGIF2LX	90316	broad.mit.edu	36	X	89064422	89064422	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138960	exon2	c.G682T	p.A228S	.	.	.