Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
OGDHL	55753	broad.mit.edu	36	10	50614459	50614459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143996	exon20	c.C2533T	p.R845W	.	.	.
CDH23	64072	broad.mit.edu	36	10	73228906	73228906	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171933	exon4	c.G367A	p.E123K	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101298668	101298668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020802	exon2	c.G215A	p.R72H	.	.	.
CADM1	23705	broad.mit.edu	36	11	114605086	114605086	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014333	exon5	c.G678A	p.A226A	.	.	.
OR4S1	256148	broad.mit.edu	36	11	48285240	48285240	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004725	exon1	c.G890T	p.R297M	.	.	.
OR8H2	390151	broad.mit.edu	36	11	55629616	55629616	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005200	exon1	c.T522C	p.I174I	.	.	.
OR5A2	219981	broad.mit.edu	36	11	58946048	58946048	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001954	exon1	c.A955G	p.I319V	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62057163	62057163	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001620	exon5	c.G1302T	p.M434I	.	.	.
SLC22A8	9376	broad.mit.edu	36	11	62518710	62518710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184732	exon8	c.G1096A	p.D366N	.	.	.
ESRRA	2101	broad.mit.edu	36	11	63839797	63839797	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004451	exon7	c.G1055C	p.R352P	.	.	.
SLCO1A2	6579	broad.mit.edu	36	12	21348715	21348715	+	Missense_Mutation	SNP	G	A	A	rs11568564	byHapMap	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_134431	exon7	c.C502T	p.R168C	.	.	.
KRT76	51350	broad.mit.edu	36	12	51452894	51452894	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015848	exon4	c.G912T	p.L304L	.	.	.
WIF1	11197	broad.mit.edu	36	12	63800537	63800537	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007191	exon2	c.A215T	p.K72I	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84016828	84016828	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032165	exon13	c.A3134T	p.N1045I	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95399606	95399606	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020121	exon13	c.G1439A	p.R480H	.	.	.
GLYR1	84656	broad.mit.edu	36	16	4822007	4822007	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032569	exon5	c.C511G	p.R171G	.	.	.
DHX58	79132	broad.mit.edu	36	17	37510696	37510696	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024119	exon10	c.G1267A	p.V423M	.	.	.
TP53	7157	broad.mit.edu	36	17	7520074	7520074	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon4	c.T338G	p.F113C	 TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.
CELF4	56853	broad.mit.edu	36	18	33399330	33399330	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025089	exon1	c.A273C	p.T91T	.	.	.
ZNF573	126231	broad.mit.edu	36	19	42921479	42921479	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172691	exon5	c.T1746C	p.C582C	.	.	.
MTOR	2475	broad.mit.edu	36	1	11122212	11122212	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004958	exon35	c.A4963T	p.K1655X	.	.	.
TCHH	7062	broad.mit.edu	36	1	150350093	150350093	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007113	exon2	c.C2224G	p.R742G	.	.	.
SPRR2E	6704	broad.mit.edu	36	1	151332836	151332836	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024209	exon2	c.C16A	p.Q6K	.	.	.
ASTN1	460	broad.mit.edu	36	1	175193517	175193517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004319	exon11	c.G1807A	p.D603N	.	.	.
USH2A	7399	broad.mit.edu	36	1	214210739	214210739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206933	exon36	c.G6808T	p.V2270F	.	.	.
C1orf57	84284	broad.mit.edu	36	1	231157938	231157938	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032324	exon2	c.C47A	p.T16K	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31926665	31926665	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001856	exon26	c.A1793G	p.K598R	.	.	.
L3MBTL1	26013	broad.mit.edu	36	20	41594916	41594916	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032107	exon12	c.C1308T	p.T436T	.	.	.
ADNP	23394	broad.mit.edu	36	20	48942205	48942205	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015339	exon5	c.A2453G	p.Y818C	.	.	.
PWP2	5822	broad.mit.edu	36	21	44366503	44366503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005049	exon14	c.C1654T	p.R552C	.	.	.
SERPIND1	3053	broad.mit.edu	36	22	19463979	19463979	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000185	exon2	c.379delA	p.N127fs	.	.	.
PSD4	23550	broad.mit.edu	36	2	113670234	113670234	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012455	exon12	c.G2265A	p.P755P	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140918639	140918639	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon64	c.G10137T	p.E3379D	.	.	.
ARHGAP15	55843	broad.mit.edu	36	2	144098301	144098301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018460	exon12	c.C1133T	p.A378V	.	.	.
TTN	7273	broad.mit.edu	36	2	179152774	179152774	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon147	c.T40200G	p.S13400R	.	.	.
CRYGC	1420	broad.mit.edu	36	2	208702478	208702478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020989	exon2	c.G184A	p.E62K	.	.	.
C2orf24	27013	broad.mit.edu	36	2	219745832	219745832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015680	exon8	c.C953T	p.P318L	.	.	.
PAX3	5077	broad.mit.edu	36	2	222775097	222775097	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127366	exon8	c.C1227T	p.Y409Y	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29147377	29147377	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029883	exon1	c.G3255A	p.S1085S	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236609977	236609977	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037131	exon14	c.1679delC	p.S560fs	.	.	.
KLHL24	54800	broad.mit.edu	36	3	184851536	184851536	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017644	exon3	c.T698A	p.V233D	.	.	.
CNTN4	152330	broad.mit.edu	36	3	3059063	3059063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175613	exon12	c.C1484T	p.A495V	.	.	.
ITGA9	3680	broad.mit.edu	36	3	37535797	37535797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002207	exon11	c.C1184T	p.A395V	.	.	.
ANK2	287	broad.mit.edu	36	4	114377641	114377641	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020977	exon6	c.C533A	p.A178E	.	.	.
CAMK2D	817	broad.mit.edu	36	4	114692688	114692688	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172115	exon5	c.G289C	p.E97Q	.	.	.
MFSD8	256471	broad.mit.edu	36	4	129062274	129062274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152778	exon12	c.C1205T	p.S402L	.	.	.
RNF175	285533	broad.mit.edu	36	4	154868870	154868870	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173662	exon4	c.G340A	p.V114I	.	.	.
TUBB4Q	56604	broad.mit.edu	36	4	191141359	191141359	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020040	exon4	c.G616A	p.A206T	.	.	.
CENPC1	1060	broad.mit.edu	36	4	68041248	68041248	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001812	exon15	c.G2353T	p.E785X	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87890806	87890806	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080683	exon18	c.G2810T	p.C937F	.	.	.
SNX2	6643	broad.mit.edu	36	5	122191196	122191196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003100	exon14	c.G1465A	p.V489I	.	.	.
WNT8A	7478	broad.mit.edu	36	5	137448186	137448186	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_058244	exon3	c.A203G	p.N68S	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153010244	153010244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114183	exon4	c.C622T	p.R208C	.	.	.
LCP2	3937	broad.mit.edu	36	5	169630383	169630383	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005565	exon7	c.G441A	p.P147P	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179675972	179675972	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005110	exon13	c.C1248T	p.D416D	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38463067	38463067	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182798	exon9	c.C1308T	p.H436H	.	.	.
C9	735	broad.mit.edu	36	5	39347176	39347176	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001737	exon7	c.C931T	p.R311C	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82973165	82973165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	T	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001884	exon5	c.G971A	p.R324H	.	.	.
APC	324	broad.mit.edu	36	5	112179175	112179175	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon7	c.865delC	p.H289fs	.	.	.
LATS1	9113	broad.mit.edu	36	6	150024982	150024982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004690	exon8	c.G2969A	p.R990Q	.	.	.
HIST1H1D	3007	broad.mit.edu	36	6	26343061	26343061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005320	exon1	c.C80T	p.A27V	.	.	.
BRPF3	27154	broad.mit.edu	36	6	36289644	36289644	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015695	exon8	c.A2492G	p.K831R	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862546	49862546	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138733	exon1	c.A314T	p.E105V	.	.	.
MDN1	23195	broad.mit.edu	36	6	90413028	90413028	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014611	exon100	c.G16411T	p.A5471S	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131503659	131503659	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020911	exon22	c.C4230T	p.A1410A	.	.	.
RAB19	401409	broad.mit.edu	36	7	139754053	139754053	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008749	exon2	c.G138C	p.Q46H	.	.	.
INSIG1	3638	broad.mit.edu	36	7	154725433	154725433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005542	exon5	c.C746T	p.P249L	.	.	.
AMZ1	155185	broad.mit.edu	36	7	2706688	2706688	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133463	exon2	c.C77T	p.A26V	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48477108	48477108	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152701	exon42	c.C12662T	p.A4221V	.	.	.
TYW1	55253	broad.mit.edu	36	7	66100529	66100529	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018264	exon2	c.C47T	p.S16L	.	.	.
HIP1	3092	broad.mit.edu	36	7	75020785	75020785	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005338	exon22	c.T2198C	p.L733P	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81637861	81637861	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000722	exon4	c.C295T	p.R99C	.	.	.
CDK14	5218	broad.mit.edu	36	7	90384897	90384897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012395	exon7	c.C694T	p.R232C	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92570583	92570583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193307	exon2	c.G2764A	p.A922T	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113638328	113638328	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198123	exon25	c.C4074T	p.G1358G	.	.	.
SCARA5	286133	broad.mit.edu	36	8	27793122	27793122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173833	exon8	c.C1234T	p.R412W	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930749	77930749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon10	c.G9037A	p.G3013R	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103539390	103539390	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133445	exon1	c.G693A	p.E231E	.	.	.
MAGEA12	4111	broad.mit.edu	36	X	151651374	151651374	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005367	exon2	c.C83T	p.A28V	.	.	.
YY2	404281	broad.mit.edu	36	X	21784928	21784928	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206923	exon1	c.G405A	p.Q135Q	.	.	.
MAGEB2	4113	broad.mit.edu	36	X	30147012	30147012	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002364	exon2	c.G394A	p.V132I	.	.	.
FAM120C	54954	broad.mit.edu	36	X	54202688	54202688	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017848	exon2	c.C786T	p.S262S	.	.	.