Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
AFAP1L2	84632	broad.mit.edu	36	10	116046997	116046997	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001936	exon17	c.C2279G	p.T760S	.	.	.
CTBP2	1488	broad.mit.edu	36	10	126704710	126704710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022802	exon1	c.C1609T	p.P537S	.	.	.
GLRX3	10539	broad.mit.edu	36	10	131863126	131863126	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199868	exon9	c.A830G	p.E277G	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30356491	30356491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020848	exon3	c.G2592A	p.A864A	.	.	.
SLC18A3	6572	broad.mit.edu	36	10	50489720	50489720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003055	exon1	c.C928T	p.P310S	.	.	.
OIT3	170392	broad.mit.edu	36	10	74354322	74354322	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152635	exon7	c.C1281T	p.S427S	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78319247	78319247	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161353	exon27	c.T3378A	p.A1126A	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78374714	78374714	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001161353	exon23	c.C2674T	p.R892W	.	.	.
SIK3	23387	broad.mit.edu	36	11	116272222	116272222	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025164	exon6	c.C648T	p.R216R	.	.	.
MCAM	4162	broad.mit.edu	36	11	118688278	118688278	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006500	exon8	c.G932A	p.R311Q	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1212954	1212954	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002458	exon22	c.C2694T	p.Y898Y	.	.	.
RAPSN	5913	broad.mit.edu	36	11	47426261	47426261	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005055	exon2	c.C210T	p.I70I	.	.	.
OR56B1	387748	broad.mit.edu	36	11	5714569	5714569	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005180	exon1	c.G247T	p.A83S	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69898778	69898778	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003626	exon24	c.G3246A	p.L1082L	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73503210	73503210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015531	exon10	c.G1597A	p.A533T	.	.	.
RNF169	254225	broad.mit.edu	36	11	74224312	74224312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098638	exon6	c.C1016T	p.S339L	.	.	.
TRIM49	57093	broad.mit.edu	36	11	89171431	89171431	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020358	exon8	c.C874A	p.H292N	.	.	.
MMAB	326625	broad.mit.edu	36	12	108483243	108483243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052845	exon7	c.G569A	p.R190H	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122896561	122896561	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207437	exon31	c.G5367A	p.T1789T	.	.	.
KRT76	51350	broad.mit.edu	36	12	51451239	51451239	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015848	exon7	c.C1295A	p.A432D	.	.	.
HMGA2	8091	broad.mit.edu	36	12	64595116	64595116	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003484	exon4	c.T260A	p.L87Q	.	.	.
MYF5	4617	broad.mit.edu	36	12	79635226	79635226	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005593	exon1	c.C253T	p.R85W	.	.	.
C12orf12	196477	broad.mit.edu	36	12	89872174	89872174	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152638	exon1	c.G477A	p.P159P	.	.	.
NBEA	26960	broad.mit.edu	36	13	34704653	34704653	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015678	exon34	c.G5673A	p.A1891A	.	.	.
POTEB	339010	broad.mit.edu	36	15	19335965	19335965	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207355	exon1	c.C336T	p.S112S	.	.	.
HERC2	8924	broad.mit.edu	36	15	26093187	26093187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004667	exon65	c.G10006A	p.E3336K	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48690703	48690703	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017672	exon17	c.C2159T	p.T720I	 TRPM7,breast,NS,Substitution - Missense,0 	.	.
GRAMD2	196996	broad.mit.edu	36	15	70246050	70246050	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012642	exon7	c.A520G	p.R174G	.	.	.
SALL1	6299	broad.mit.edu	36	16	49731400	49731400	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002968	exon2	c.C2234T	p.T745M	.	.	.
TBC1D28	254272	broad.mit.edu	36	17	18480574	18480574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039397	exon10	c.G559A	p.G187R	.	.	.
RPAIN	84268	broad.mit.edu	36	17	5264259	5264259	+	Missense_Mutation	SNP	C	T	T	rs3026147	byHapMap	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160244	exon1	c.C5T	p.A2V	.	.	.
GNA13	10672	broad.mit.edu	36	17	60480229	60480229	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006572	exon2	c.G363A	p.K121K	.	.	.
C17orf68	80169	broad.mit.edu	36	17	8076108	8076108	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025099	exon13	c.C2223A	p.L741L	.	.	.
DLGAP1	9229	broad.mit.edu	36	18	3804212	3804212	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003809	exon2	c.G113A	p.R38Q	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43628879	43628879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon7	c.G872A	p.R291Q	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21511870	21511870	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001415	exon4	c.C1175A	p.T392N	.	.	.
ZNF793	390927	broad.mit.edu	36	19	42720319	42720319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013659	exon8	c.G919A	p.G307R	.	.	.
PAPL	390928	broad.mit.edu	36	19	44292556	44292556	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004318	exon13	c.C1275A	p.V425V	.	.	.
VRK3	51231	broad.mit.edu	36	19	55184831	55184832	+	Missense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025778	exon10	c.822_823TT	.	.	.	.
NLRP12	91662	broad.mit.edu	36	19	58996314	58996314	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144687	exon7	c.C2735T	p.T912M	.	.	.
LILRA6	79168	broad.mit.edu	36	19	59436120	59436120	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024318	exon6	c.G1100A	p.R367H	.	.	.
ZNF71	58491	broad.mit.edu	36	19	61824611	61824611	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021216	exon3	c.G144A	p.P48P	.	.	.
ZNF211	10520	broad.mit.edu	36	19	62844545	62844545	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198855	exon3	c.C879T	p.F293F	.	.	.
MUC16	94025	broad.mit.edu	36	19	8920933	8920933	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon3	c.G27513A	p.S9171S	.	.	.
ELF3	1999	broad.mit.edu	36	1	200248474	200248475	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114309	exon5	c.562_563insC	p.A188fs	.	.	.
NRAS	4893	broad.mit.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon2	c.G34T	p.G12C	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.
MTHFR	4524	broad.mit.edu	36	1	11776664	11776664	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005957	exon9	c.C1417A	p.R473R	.	.	.
AADACL4	343066	broad.mit.edu	36	1	12633795	12633795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013630	exon2	c.G235A	p.V79M	.	.	.
TCHH	7062	broad.mit.edu	36	1	150350263	150350263	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007113	exon2	c.T2054A	p.L685Q	.	.	.
FLG	2312	broad.mit.edu	36	1	150551183	150551183	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002016	exon3	c.G2803T	p.G935W	.	.	.
TMEM51	55092	broad.mit.edu	36	1	15414420	15414420	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136216	exon3	c.A250T	p.S84C	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002636	157002636	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005185	exon1	c.C461A	p.A154D	.	.	.
FAM131C	348487	broad.mit.edu	36	1	16258652	16258652	+	Silent	SNP	T	A	A	rs61769893	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182623	exon6	c.A486T	p.T162T	.	.	.
LRRC52	440699	broad.mit.edu	36	1	163780643	163780643	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005214	exon1	c.G486T	p.L162F	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174830321	174830321	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020318	exon3	c.G958C	p.G320R	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184407813	184407813	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031935	exon102	c.C15741T	p.N5247N	.	.	.
IL10	3586	broad.mit.edu	36	1	205010932	205010932	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000572	exon3	c.G321A	p.A107A	.	.	.
SLC35F3	148641	broad.mit.edu	36	1	232433987	232433987	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173508	exon3	c.A485C	p.K162T	.	.	.
ZNF672	79894	broad.mit.edu	36	1	247108765	247108765	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024836	exon4	c.G669T	p.G223G	.	.	.
EIF2B3	8891	broad.mit.edu	36	1	45135637	45135637	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166588	exon6	c.C633T	p.I211I	.	.	.
HECTD3	79654	broad.mit.edu	36	1	45248482	45248482	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024602	exon3	c.G601A	p.A201T	.	.	.
GLIS1	148979	broad.mit.edu	36	1	53763143	53763143	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_147193	exon5	c.G963A	p.P321P	.	.	.
C8B	732	broad.mit.edu	36	1	57179225	57179225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000066	exon9	c.G1283A	p.R428Q	.	.	.
TMEM90B	79953	broad.mit.edu	36	20	24513629	24513629	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024893	exon3	c.G618T	p.E206D	.	.	.
DDX27	55661	broad.mit.edu	36	20	47284933	47284933	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017895	exon12	c.A1421G	p.K474R	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44643740	44643741	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003307	exon14	c.2196_2197insG	p.H732fs	.	.	.
GABPA	2551	broad.mit.edu	36	21	26058835	26058835	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001197297	exon9	c.C1002T	p.D334D	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29849267	29849267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175611	exon15	c.C2539T	p.R847W	.	.	.
KCNE2	9992	broad.mit.edu	36	21	34664944	34664944	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172201	exon2	c.A297G	p.Q99Q	.	.	.
GGT1	2678	broad.mit.edu	36	22	23340828	23340828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013430	exon6	c.G250A	p.G84S	.	.	.
MPPED1	758	broad.mit.edu	36	22	42160944	42160944	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001044370	exon3	c.C271T	p.R91C	.	.	.
KIAA1644	85352	broad.mit.edu	36	22	43012780	43012780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099294	exon4	c.C460T	p.R154W	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133255182	133255182	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207363	exon15	c.T4962A	p.C1654X	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133259709	133259709	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207363	exon14	c.G1145T	p.S382I	.	.	.
TTN	7273	broad.mit.edu	36	2	179117318	179117318	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon173	c.A68688T	p.P22896P	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196468182	196468182	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018897	exon30	c.G4659A	p.S1553S	.	.	.
EPHA4	2043	broad.mit.edu	36	2	222074043	222074043	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004438	exon4	c.C917T	p.S306L	.	.	.
WDR43	23160	broad.mit.edu	36	2	28989018	28989018	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015131	exon4	c.A544G	p.M182V	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50633376	50633376	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135659	exon10	c.G1732T	p.V578L	.	.	.
ACTR2	10097	broad.mit.edu	36	2	65334431	65334431	+	Missense_Mutation	SNP	G	A	A	rs17851188	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005386	exon6	c.G529A	p.G177S	.	.	.
TEX261	113419	broad.mit.edu	36	2	71072591	71072591	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144582	exon3	c.G181A	p.V61I	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148401188	148401188	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001616	exon11	c.1417delG	p.G473fs	.	.	.
MORC1	27136	broad.mit.edu	36	3	110181114	110181114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014429	exon24	c.G2415A	p.S805S	.	.	.
PLA1A	51365	broad.mit.edu	36	3	120814565	120814565	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015900	exon5	c.G574A	p.A192T	.	.	.
MUC13	56667	broad.mit.edu	36	3	126109823	126109823	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033049	exon11	c.T1397G	p.L466R	.	.	.
RAF1	5894	broad.mit.edu	36	3	12620699	12620699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002880	exon7	c.C770T	p.S257L	.	.	.
BCHE	590	broad.mit.edu	36	3	166973912	166973912	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000055	exon4	c.T1761A	p.N587K	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180434794	180434794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon21	c.C3155A	p.T1052K	 PIK3CA,lung,NS,Substitution - Missense,0 	.	.
FXR1	8087	broad.mit.edu	36	3	182163413	182163413	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013438	exon12	c.C1126T	p.R376X	.	.	.
DHX30	22907	broad.mit.edu	36	3	47863044	47863044	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138615	exon11	c.G1478A	p.R493H	.	.	.
C3orf64	285203	broad.mit.edu	36	3	69141492	69141492	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173654	exon4	c.C196A	p.L66I	.	.	.
PITX2	5308	broad.mit.edu	36	4	111772981	111772981	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153426	exon3	c.A151T	p.K51X	.	.	.
EXOSC9	5393	broad.mit.edu	36	4	122950599	122950599	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034194	exon7	c.A633G	p.E211E	.	.	.
CCNA2	890	broad.mit.edu	36	4	122960053	122960053	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001237	exon5	c.C926G	p.P309R	.	.	.
FAT4	79633	broad.mit.edu	36	4	126555797	126555798	+	Missense_Mutation	DNP	CC	AG	AG	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon5	c.6229_6230AG	.	.	.	.
FAT4	79633	broad.mit.edu	36	4	126632055	126632055	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon17	c.T14628C	p.S4876S	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134290845	134290845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032961	exon1	c.G100A	p.V34M	.	.	.
DHX15	1665	broad.mit.edu	36	4	24150944	24150944	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001358	exon10	c.A1671G	p.E557E	.	.	.
HTT	3064	broad.mit.edu	36	4	3103185	3103185	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002111	exon16	c.G2121A	p.V707V	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35746190	35746190	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015230	exon33	c.G4849T	p.E1617X	.	.	.
WDR19	57728	broad.mit.edu	36	4	38906302	38906302	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025132	exon16	c.T1707G	p.D569E	.	.	.
YIPF7	285525	broad.mit.edu	36	4	44321385	44321385	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182592	exon5	c.T670G	p.F224V	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47232800	47232800	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020453	exon7	c.C1008T	p.G336G	.	.	.
FRYL	285527	broad.mit.edu	36	4	48243005	48243005	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015030	exon42	c.T5115G	p.P1705P	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169405481	169405482	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004946	exon39	c.3960_3961insA	p.Q1320fs	.	.	.
APC	324	broad.mit.edu	36	5	112202009	112202009	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2765A	p.S922X	 APC,stomach,NS,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203446	112203446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G4202A	p.S1401N	.	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
DMXL1	1657	broad.mit.edu	36	5	118513713	118513713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005509	exon18	c.C4292T	p.T1431M	.	.	.
PKD2L2	27039	broad.mit.edu	36	5	137271381	137271381	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014386	exon7	c.C1027A	p.L343I	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147474168	147474168	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127699	exon21	c.C1938A	p.C646X	.	.	.
TIMD4	91937	broad.mit.edu	36	5	156314041	156314041	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138379	exon2	c.C363T	p.N121N	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15989995	15989995	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012304	exon4	c.C1176T	p.H392H	.	.	.
EIF4E1B	253314	broad.mit.edu	36	5	176002825	176002825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099408	exon4	c.C152T	p.T51M	.	.	.
RPS23	6228	broad.mit.edu	36	5	81608005	81608005	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025	exon3	c.G253T	p.V85L	.	.	.
VCAN	1462	broad.mit.edu	36	5	82911562	82911562	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164097	exon13	c.C6927T	p.C2309C	.	.	.
TTC37	9652	broad.mit.edu	36	5	94885956	94885956	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014639	exon16	c.A1421T	p.D474V	.	.	.
FBN2	2201	broad.mit.edu	36	5	127623291	127623291	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001999	exon65	c.8494delA	p.I2832fs	.	.	.
TRDN	10345	broad.mit.edu	36	6	123636209	123636210	+	Splice_Site	INS	-	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	-	-	-	A	-	A	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
TRDN	10345	broad.mit.edu	36	6	123911412	123911412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006073	exon3	c.C277T	p.R93C	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128344078	128344078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002844	exon25	c.C3587T	p.A1196V	.	.	.
HIST1H1C	3006	broad.mit.edu	36	6	26164197	26164197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005319	exon1	c.C439T	p.P147S	.	.	.
KCNH2	3757	broad.mit.edu	36	7	150279775	150279775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172057	exon3	c.G619A	p.A207T	.	.	.
RSPH10B	222967	broad.mit.edu	36	7	6764023	6764023	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173565	exon3	c.G190A	p.V64I	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116686083	116686083	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014112	exon4	c.A1288T	p.I430L	.	.	.
DLC1	10395	broad.mit.edu	36	8	12994700	12994700	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182643	exon13	c.C3532T	p.P1178S	.	.	.
CDCA2	157313	broad.mit.edu	36	8	25421080	25421080	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152562	exon15	c.G2981C	p.G994A	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36907797	36907797	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031836	exon25	c.C2907T	p.H969H	.	.	.
ANK1	286	broad.mit.edu	36	8	41700253	41700253	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020475	exon8	c.G767A	p.R256Q	.	.	.
SOX17	64321	broad.mit.edu	36	8	55534917	55534917	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022454	exon2	c.G1054T	p.A352S	.	.	.
SGK223	157285	broad.mit.edu	36	8	8223381	8223381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080826	exon4	c.C2321T	p.S774L	.	.	.
CDCA2	157313	broad.mit.edu	36	8	25402005	25402006	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152562	exon13	c.1554_1555del	p.518_519del	.	.	.
OR13C9	286362	broad.mit.edu	36	9	106419997	106419997	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001956	exon1	c.G310A	p.G104S	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130062607	130062607	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004486	exon17	c.C1635T	p.L545L	.	.	.
POMT1	10585	broad.mit.edu	36	9	133374124	133374124	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007171	exon6	c.G433T	p.A145S	.	.	.
ACER2	340485	broad.mit.edu	36	9	19414801	19414801	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010887	exon3	c.C327T	p.F109F	.	.	.
DCX	1641	broad.mit.edu	36	X	110540095	110540095	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178153	exon2	c.G188A	p.R63H	.	.	.
ZDHHC15	158866	broad.mit.edu	36	X	74659494	74659494	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146256	exon1	c.G91A	p.V31I	.	.	.
FAM46D	169966	broad.mit.edu	36	X	79585807	79585807	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001170574	exon5	c.C1113T	p.P371P	.	.	.