Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SLC25A28	81894	broad.mit.edu	36	10	101361027	101361027	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031212	exon4	c.G664A	p.G222R	.	.	.
SLK	9748	broad.mit.edu	36	10	105770341	105770341	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014720	exon17	c.C3427T	p.R1143C	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114893712	114893712	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146284	exon6	c.T657G	p.Y219X	.	.	.
MYPN	84665	broad.mit.edu	36	10	69631693	69631693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032578	exon18	c.C3595T	p.P1199S	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	118021410	118021411	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144759	exon15	c.3107_3108insC	p.F1036fs	.	.	.
HINFP	25988	broad.mit.edu	36	11	118509067	118509067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015517	exon10	c.G1067A	p.R356Q	.	.	.
CD44	960	broad.mit.edu	36	11	35154722	35154722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001389	exon2	c.C92T	p.A31V	.	.	.
OR4A15	81328	broad.mit.edu	36	11	54892432	54892432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005275	exon1	c.G497A	p.R166H	.	.	.
OR56A1	120796	broad.mit.edu	36	11	6005261	6005261	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001917	exon1	c.G250A	p.V84I	.	.	.
DLG2	1740	broad.mit.edu	36	11	83448077	83448077	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142700	exon4	c.G380A	p.R127Q	.	.	.
FAT3	120114	broad.mit.edu	36	11	92204483	92204483	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008781	exon13	c.G9529T	p.V3177F	.	.	.
HSD17B12	51144	broad.mit.edu	36	11	43658956	43658956	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016142	exon1	c.3delG	p.M1fs	.	.	.
AMBRA1	55626	broad.mit.edu	36	11	46375753	46375753	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017749	exon19	c.3450delG	p.G1150fs	.	.	.
ACACB	32	broad.mit.edu	36	12	108138825	108138825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001093	exon22	c.G3370A	p.G1124S	.	.	.
EIF2B1	1967	broad.mit.edu	36	12	122680898	122680898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001414	exon3	c.C251T	p.S84F	.	.	.
LMO3	55885	broad.mit.edu	36	12	16644925	16644925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001395	exon2	c.G137A	p.R46H	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2437100	2437100	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001129842	exon5	c.C724T	p.L242L	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
IPO8	10526	broad.mit.edu	36	12	30681235	30681235	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006390	exon22	c.G2643A	p.L881L	.	.	.
YARS2	51067	broad.mit.edu	36	12	32794171	32794171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040436	exon4	c.G1241A	p.R414H	.	.	.
ABCD2	225	broad.mit.edu	36	12	38299191	38299191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005164	exon1	c.G494A	p.R165K	.	.	.
SLC7A7	9056	broad.mit.edu	36	14	22313142	22313142	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126106	exon10	c.C1269A	p.V423V	.	.	.
GPHN	10243	broad.mit.edu	36	14	66460751	66460751	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020806	exon8	c.A817G	p.T273A	.	.	.
C14orf43	91748	broad.mit.edu	36	14	73275658	73275658	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001043318	exon2	c.G807A	p.P269P	.	.	.
DDX24	57062	broad.mit.edu	36	14	93589208	93589208	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020414	exon8	c.C2197T	p.R733X	.	.	.
GABRG3	2567	broad.mit.edu	36	15	25156750	25156750	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033223	exon5	c.C543T	p.D181D	.	.	.
SLC12A6	9990	broad.mit.edu	36	15	32323482	32323482	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042497	exon14	c.T1982A	p.F661Y	.	.	.
SLC12A6	9990	broad.mit.edu	36	15	32340512	32340512	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042497	exon2	c.C273T	p.D91D	.	.	.
FBN1	2200	broad.mit.edu	36	15	46507210	46507210	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000138	exon58	c.C7050T	p.I2350I	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	47939876	47939876	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024837	exon28	c.G3386T	p.G1129V	.	.	.
LASS3	204219	broad.mit.edu	36	15	98827127	98827127	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178842	exon11	c.G824A	p.R275H	.	.	.
KIAA0430	9665	broad.mit.edu	36	16	15598161	15598161	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184999	exon27	c.T5110G	p.S1704A	.	.	.
SMG1	23049	broad.mit.edu	36	16	18773499	18773499	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015092	exon30	c.C4463A	p.T1488N	.	.	.
SEC14L5	9717	broad.mit.edu	36	16	4998481	4998481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014692	exon14	c.G1631A	p.R544Q	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69754051	69754051	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032821	exon6	c.C600T	p.L200L	.	.	.
MYH4	4622	broad.mit.edu	36	17	10299771	10299771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017533	exon19	c.G2059A	p.A687T	.	.	.
ZNF287	57336	broad.mit.edu	36	17	16411626	16411626	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020653	exon2	c.C145T	p.R49X	.	.	.
ADAP2	55803	broad.mit.edu	36	17	26305697	26305697	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018404	exon9	c.C880T	p.L294L	.	.	.
RNF43	54894	broad.mit.edu	36	17	53790652	53790652	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017763	exon9	c.C1484A	p.S495Y	.	.	.
ZFP161	7541	broad.mit.edu	36	18	5280595	5280596	+	Splice_Site	INS	-	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
DSEL	92126	broad.mit.edu	36	18	63331699	63331699	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032160	exon2	c.C1157A	p.P386H	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6975349	6975349	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005559	exon39	c.G5547T	p.R1849S	.	.	.
USHBP1	83878	broad.mit.edu	36	19	17230081	17230081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031941	exon8	c.G1160A	p.R387K	.	.	.
ATP5SL	55101	broad.mit.edu	36	19	46636108	46636108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167868	exon2	c.C88T	p.R30C	.	.	.
SIGLEC6	946	broad.mit.edu	36	19	56724928	56724928	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001245	exon5	c.G874A	p.A292T	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61231009	61231009	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153447	exon7	c.G1598A	p.R533H	.	.	.
VN1R1	57191	broad.mit.edu	36	19	62658729	62658729	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020633	exon1	c.T938A	p.V313D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8947293	8947293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon1	c.C5522T	p.T1841I	.	.	.
KCND3	3752	broad.mit.edu	36	1	112325995	112325995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004980	exon2	c.C877T	p.R293C	.	.	.
IGSF3	3321	broad.mit.edu	36	1	116923601	116923601	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001542	exon11	c.G3330T	p.Q1110H	.	.	.
CD1E	913	broad.mit.edu	36	1	156592408	156592408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001185107	exon3	c.G523A	p.E175K	.	.	.
TNR	7143	broad.mit.edu	36	1	173601691	173601691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003285	exon11	c.G2260A	p.V754I	.	.	.
PLEKHA6	22874	broad.mit.edu	36	1	202463970	202463970	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014935	exon21	c.C2895T	p.N965N	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245105994	245105995	+	Missense_Mutation	DNP	TA	CC	CC	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	TA	TA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015446	exon24	c.3082_3083GG	.	.	.	.
OR2T1	26696	broad.mit.edu	36	1	246636289	246636289	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030904	exon1	c.T371C	p.I124T	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37110441	37110441	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000831	exon4	c.C667T	p.R223X	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64890561	64890561	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020925	exon10	c.C1367A	p.T456N	.	.	.
IL12RB2	3595	broad.mit.edu	36	1	67567873	67567873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001559	exon6	c.C680T	p.P227L	.	.	.
NEXN	91624	broad.mit.edu	36	1	78180414	78180414	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144573	exon12	c.G1592T	p.R531I	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13816480	13816480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025229	exon8	c.C680T	p.S227L	.	.	.
C20orf103	24141	broad.mit.edu	36	20	9446804	9446804	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199897	exon4	c.C461T	p.T154M	.	.	.
CCT8L2	150160	broad.mit.edu	36	22	15452807	15452807	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014406	exon1	c.A634T	p.T212S	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48894290	48894290	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164104	exon6	c.C830A	p.T277K	.	.	.
GPR45	11250	broad.mit.edu	36	2	105224764	105224764	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007227	exon1	c.C17T	p.T6M	.	.	.
MARCO	8685	broad.mit.edu	36	2	119443250	119443250	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006770	exon2	c.G142A	p.V48M	.	.	.
R3HDM1	23518	broad.mit.edu	36	2	136184125	136184125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015361	exon22	c.G2485A	p.G829R	.	.	.
TTN	7273	broad.mit.edu	36	2	179320584	179320584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon46	c.G14788T	p.V4930F	.	.	.
TTN	7273	broad.mit.edu	36	2	179355784	179355784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon18	c.G3094A	p.V1032M	.	.	.
STAT4	6775	broad.mit.edu	36	2	191637828	191637828	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003151	exon8	c.C732T	p.I244I	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735946	68735946	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138964	exon2	c.G916A	p.V306M	.	.	.
PCBP1	5093	broad.mit.edu	36	2	70168678	70168678	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006196	exon1	c.T299A	p.L100Q	.	.	.
GMPS	8833	broad.mit.edu	36	3	157114932	157114932	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003875	exon8	c.G917T	p.G306V	.	.	.
SPATA16	83893	broad.mit.edu	36	3	174317639	174317639	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031955	exon2	c.G577A	p.A193T	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418788	180418788	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.C1636A	p.Q546K	 PIK3CA,large_intestine,colon,Substitution - Missense,-1 	.	.
ARPP21	10777	broad.mit.edu	36	3	35753797	35753797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016300	exon16	c.C1583T	p.P528L	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65351908	65351908	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015520	exon14	c.C2365A	p.P789T	.	.	.
CENPE	1062	broad.mit.edu	36	4	104299806	104299806	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001813	exon22	c.A2411G	p.D804G	.	.	.
CRIPAK	285464	broad.mit.edu	36	4	1379481	1379481	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175918	exon1	c.C1182T	p.P394P	.	.	.
TMEM184C	55751	broad.mit.edu	36	4	148773595	148773595	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018241	exon8	c.G871A	p.G291R	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183951424	183951424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080477	exon25	c.C6605T	p.T2202M	.	.	.
GUF1	60558	broad.mit.edu	36	4	44388558	44388558	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021927	exon13	c.C1598T	p.S533F	.	.	.
APC	324	broad.mit.edu	36	5	112201995	112201995	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C2751A	p.Y917X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
PCDHGB4	8641	broad.mit.edu	36	5	140749770	140749770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032098	exon1	c.G2135A	p.R712H	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140759413	140759413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032099	exon1	c.C1535T	p.A512V	.	.	.
ITK	3702	broad.mit.edu	36	5	156577481	156577481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005546	exon5	c.C481T	p.P161S	.	.	.
CDH10	1008	broad.mit.edu	36	5	24523815	24523815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006727	exon12	c.C2081T	p.T694M	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5290199	5290199	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139056	exon14	c.A2141T	p.D714V	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292185	63292185	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000524	exon1	c.G1118C	p.S373T	.	.	.
GFM2	84340	broad.mit.edu	36	5	74082218	74082218	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170681	exon7	c.G461A	p.R154Q	.	.	.
TTC37	9652	broad.mit.edu	36	5	94829334	94829334	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014639	exon42	c.C4612A	p.L1538I	.	.	.
PRDM1	639	broad.mit.edu	36	6	106661577	106661577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198	exon7	c.G2001A	p.K667K	.	.	.
UTRN	7402	broad.mit.edu	36	6	144791655	144791655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007124	exon7	c.G627A	p.E209E	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75898419	75898419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon35	c.G5894A	p.R1965H	.	.	.
ME1	4199	broad.mit.edu	36	6	84174285	84174285	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002395	exon2	c.C133A	p.P45T	.	.	.
ORC3	23595	broad.mit.edu	36	6	88368308	88368308	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012381	exon3	c.C167A	p.S56Y	.	.	.
MUC17	140453	broad.mit.edu	36	7	100473287	100473287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040105	exon3	c.C11870T	p.T3957I	.	.	.
LRGUK	136332	broad.mit.edu	36	7	133557141	133557141	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144648	exon16	c.C1914A	p.F638L	.	.	.
EPHB6	2051	broad.mit.edu	36	7	142272199	142272199	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004445	exon7	c.T519C	p.S173S	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156649311	156649311	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014671	exon2	c.A113C	p.K38T	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779829	77779829	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon2	c.C951T	p.C317C	.	.	.
RNF20	56254	broad.mit.edu	36	9	103354666	103354666	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019592	exon13	c.C1711T	p.R571X	.	.	.
MLLT3	4300	broad.mit.edu	36	9	20353527	20353527	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004529	exon7	c.C1278T	p.D426D	.	.	.
PTCHD1	139411	broad.mit.edu	36	X	23307743	23307743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173495	exon2	c.G466A	p.V156I	.	.	.
KDM5D	8284	broad.mit.edu	36	Y	20336925	20336925	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004653	exon17	c.C2302T	p.R768X	.	.	.