Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DGKI	9162	hgsc.bcm.edu	36	7	136730949	136730949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004717	exon33	c.C3016T	p.R1006W	.	.	.
CLEC5A	23601	hgsc.bcm.edu	36	7	141278038	141278038	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013252	exon6	c.C403A	p.R135S	.	.	.
ADCY1	107	hgsc.bcm.edu	36	7	45716707	45716707	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021116	exon19	c.C2988T	p.Y996Y	.	.	.
CDH26	60437	hgsc.bcm.edu	36	20	57991395	57991395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_177980	exon5	c.G416A	p.R139H	.	.	.
SMARCB1	6598	hgsc.bcm.edu	36	22	22489024	22489024	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003073	exon6	c.G696A	p.T232T	.	.	.
PLA2G4C	8605	hgsc.bcm.edu	36	19	53243445	53243445	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159322	exon17	c.G1623A	p.P541P	.	.	.
SCAF1	58506	hgsc.bcm.edu	36	19	54840160	54840160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021228	exon2	c.C65T	p.P22L	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195325836	195325836	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018136	exon25	c.G9831A	p.E3277E	.	.	.
GDPD5	81544	hgsc.bcm.edu	36	11	74829926	74829926	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030792	exon14	c.C1403T	p.A468V	.	.	.
FARS2	10667	hgsc.bcm.edu	36	6	5349835	5349835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006567	exon3	c.C674T	p.A225V	.	.	.
COL1A1	1277	hgsc.bcm.edu	36	17	45617950	45617950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000088	exon51	c.G4307A	p.R1436H	.	.	.
ALOXE3	59344	hgsc.bcm.edu	36	17	7953249	7953249	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001165960	exon12	c.C1926T	p.D642D	.	.	.
DNAH3	55567	hgsc.bcm.edu	36	16	20883478	20883478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017539	exon53	c.C9229T	p.R3077C	.	.	.
ATP9B	374868	hgsc.bcm.edu	36	18	75168194	75168194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198531	exon15	c.G1745A	p.R582H	.	.	.
SI	6476	hgsc.bcm.edu	36	3	166243562	166243562	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001041	exon17	c.C1983G	p.N661K	.	.	.
NLGN1	22871	hgsc.bcm.edu	36	3	175481579	175481579	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014932	exon7	c.G2264A	p.R755Q	.	.	.
PLBD2	196463	hgsc.bcm.edu	36	12	112310019	112310019	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159727	exon10	c.C1431T	p.S477S	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
POU6F1	5463	hgsc.bcm.edu	36	12	49872452	49872452	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002702	exon4	c.G319A	p.A107T	.	.	.
MDM1	56890	hgsc.bcm.edu	36	12	66993532	66993532	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017440	exon11	c.C1677G	p.T559T	.	.	.
LIN7A	8825	hgsc.bcm.edu	36	12	79729566	79729566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004664	exon5	c.G511A	p.A171T	.	.	.
RBPJ	3516	hgsc.bcm.edu	36	4	26041576	26041576	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_203284	exon12	c.G1310A	p.R437Q	.	.	.
MAPK10	5602	hgsc.bcm.edu	36	4	87241368	87241368	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138981	exon3	c.C156A	p.V52V	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123342600	123342600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014253	exon31	c.C7645T	p.R2549W	.	.	.
MAGEB4	4115	hgsc.bcm.edu	36	X	30170875	30170875	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002367	exon1	c.G702T	p.R234S	.	.	.
C2orf66	401027	hgsc.bcm.edu	36	2	197382348	197382348	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_213608	exon1	c.T9C	p.I3I	.	.	.
MSH6	2956	hgsc.bcm.edu	36	2	47871732	47871732	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000179	exon2	c.C423T	p.G141G	MSH6,endometrium,NS,Substitution - coding silent,0	.	.
PALM2-AKAP2	445815	hgsc.bcm.edu	36	9	111958577	111958577	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147150	exon9	c.C3153T	p.R1051R	.	.	.
KCNT1	57582	hgsc.bcm.edu	36	9	137809072	137809072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020822	exon21	c.C2417T	p.S806L	.	.	.
TEK	7010	hgsc.bcm.edu	36	9	27192846	27192846	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000459	exon13	c.G1938T	p.K646N	.	.	.
PNPLA7	375775	hgsc.bcm.edu	36	9	139537096	139537096	+	Missense_Mutation	SNP	C	C	T	rs12788	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152286	exon8	c.G707A	p.R236H	.	.	.
STARD13	90627	hgsc.bcm.edu	36	13	32639726	32639726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178006	exon2	c.G203A	p.R68H	.	.	.
MYCBP2	23077	hgsc.bcm.edu	36	13	76539850	76539850	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015057	exon71	c.A12322G	p.M4108V	.	.	.
ZIC2	7546	hgsc.bcm.edu	36	13	99433132	99433132	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007129	exon1	c.G813A	p.K271K	.	.	.
MTG1	92170	hgsc.bcm.edu	36	10	135059666	135059666	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138384	exon3	c.T187A	p.S63T	.	.	.
GATA3	2625	hgsc.bcm.edu	36	10	8155913	8155913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002051	exon6	c.C1253T	p.T418M	.	.	.
PANK1	53354	hgsc.bcm.edu	36	10	91338449	91338449	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138316	exon5	c.G825A	p.L275L	.	.	.
CDH18	1016	hgsc.bcm.edu	36	5	19648334	19648334	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004934	exon6	c.C777T	p.T259T	.	.	.