Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target TSHZ3 57616 hgsc.bcm.edu 36 19 36461981 36461981 + Silent SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_020856 exon2 c.G558A p.P186P . . . ZNF382 84911 hgsc.bcm.edu 36 19 41792734 41792734 + Silent SNP T T C novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_032825 exon3 c.T78C p.P26P . . . CYP2A13 1553 hgsc.bcm.edu 36 19 46291480 46291480 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_000766 exon6 c.G937A p.G313S . . . PSG9 5678 hgsc.bcm.edu 36 19 48454879 48454879 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_002784 exon4 c.C958T p.R320C . . . DHX34 9704 hgsc.bcm.edu 36 19 52550273 52550273 + Silent SNP C C A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_014681 exon3 c.C843A p.V281V . . . AURKC 6795 hgsc.bcm.edu 36 19 62435727 62435727 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_003160 exon4 c.C200A p.P67H . . . NBPF16 728936 hgsc.bcm.edu 36 1 147019944 147019944 + Missense_Mutation SNP C C T rs1043672 unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001102663 exon12 c.C1337T p.T446I . . . ARNT 405 hgsc.bcm.edu 36 1 149051138 149051138 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001197325 exon21 c.C2305T p.P769S . . . TUFT1 7286 hgsc.bcm.edu 36 1 149808778 149808778 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020127 exon7 c.G502T p.D168Y . . . ASTN1 460 hgsc.bcm.edu 36 1 175104683 175104683 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004319 exon22 c.C3567A p.H1189Q . . . ARID1A 8289 hgsc.bcm.edu 36 1 26931856 26931856 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_006015 exon4 c.C1906T p.P636S . . . C1orf38 9473 hgsc.bcm.edu 36 1 28084509 28084509 + Nonsense_Mutation SNP G G T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001039477 exon3 c.G352T p.E118X . . . LRRC7 57554 hgsc.bcm.edu 36 1 70314397 70314397 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020794 exon22 c.G4166A p.R1389H . . . LPAR3 23566 hgsc.bcm.edu 36 1 85052320 85052320 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_012152 exon3 c.G859A p.V287I . . . E2F2 1870 hgsc.bcm.edu 36 1 23709169 23709169 + Silent SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_004091 exon7 c.G1104A p.L368L . . . TRPC6 7225 hgsc.bcm.edu 36 11 100867531 100867531 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004621 exon3 c.G1094A p.R365H . . . UBE4A 9354 hgsc.bcm.edu 36 11 117762421 117762421 + Missense_Mutation SNP T T C novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004788 exon16 c.T2492C p.L831P . . . OR6T1 219874 hgsc.bcm.edu 36 11 123319089 123319089 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001005187 exon1 c.G667T p.A223S . . . ANO5 203859 hgsc.bcm.edu 36 11 22214363 22214363 + Missense_Mutation SNP T T G novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001142649 exon8 c.T724G p.S242A . . . ZFP91 80829 hgsc.bcm.edu 36 11 58136866 58136866 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_053023 exon8 c.C964T p.L322F . . . SYNE1 23345 hgsc.bcm.edu 36 6 152758475 152758475 + Silent SNP C C A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_033071 exon51 c.G7602T p.L2534L . . . TAP2 6891 hgsc.bcm.edu 36 6 32908501 32908501 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_018833 exon6 c.G1024A p.V342I . . . PRSS35 167681 hgsc.bcm.edu 36 6 84290433 84290433 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001170423 exon3 c.G554A p.R185K . . . KLHL32 114792 hgsc.bcm.edu 36 6 97639840 97639840 + Missense_Mutation SNP A A C novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_052904 exon6 c.A529C p.S177R . . . GAS2L2 246176 hgsc.bcm.edu 36 17 31097332 31097332 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_139285 exon6 c.G1297T p.G433W . . . KRT37 8688 hgsc.bcm.edu 36 17 36832173 36832173 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_003770 exon4 c.C772T p.R258W . . . PSMC5 5705 hgsc.bcm.edu 36 17 59260609 59260609 + Silent SNP A A G novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_002805 exon3 c.A120G p.Q40Q . . . TP53 7157 hgsc.bcm.edu 36 17 7518275 7518275 + Missense_Mutation SNP C C T rs28934572 unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001126114 exon7 c.G731A p.G244D TP53,central_nervous_system,brain,Substitution - Missense,+2 . . UBN1 29855 hgsc.bcm.edu 36 16 4850694 4850694 + Missense_Mutation SNP A A G novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_016936 exon6 c.A700G p.K234E . . . GRIN2A 2903 hgsc.bcm.edu 36 16 9765180 9765180 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001134408 exon13 c.G3722A p.R1241Q . . . ZPLD1 131368 hgsc.bcm.edu 36 3 103670547 103670547 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_175056 exon8 c.C859T p.R287W . . . TRIM42 287015 hgsc.bcm.edu 36 3 141884455 141884455 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_152616 exon2 c.C803T p.S268L . . . ITGA9 3680 hgsc.bcm.edu 36 3 37542546 37542546 + Silent SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_002207 exon13 c.C1353T p.S451S . . . LRTM1 57408 hgsc.bcm.edu 36 3 54933725 54933725 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020678 exon2 c.C565T p.L189F . . . GHSR 2693 hgsc.bcm.edu 36 3 173648822 173648822 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_198407 exon1 c.G76A p.G26S . . . RASSF8 11228 hgsc.bcm.edu 36 12 26109216 26109216 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_007211 exon4 c.C622T p.R208C . . . GDF3 9573 hgsc.bcm.edu 36 12 7739345 7739345 + Missense_Mutation SNP G G C novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020634 exon1 c.C247G p.L83V . . . CORO2B 10391 hgsc.bcm.edu 36 15 66774631 66774631 + Silent SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_006091 exon3 c.G315A p.S105S . . . RP13-102H20.1 158763 hgsc.bcm.edu 36 X 130047365 130047365 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_144967 exon8 c.G1078T p.D360Y . . . LRP2 4036 hgsc.bcm.edu 36 2 169752927 169752927 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004525 exon49 c.C9127T p.R3043C . . . COL6A3 1293 hgsc.bcm.edu 36 2 237940176 237940176 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_057166 exon8 c.G3572A p.R1191H . . . NRBP1 29959 hgsc.bcm.edu 36 2 27518092 27518092 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_013392 exon18 c.G1517A p.R506Q . . . ASTL 431705 hgsc.bcm.edu 36 2 96153397 96153397 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001002036 exon9 c.G1215T p.Q405H . . . SNRNP200 23020 hgsc.bcm.edu 36 2 96317000 96317000 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014014 exon26 c.C3388T p.R1130C . . . NIPSNAP3B 55335 hgsc.bcm.edu 36 9 106568485 106568485 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_018376 exon2 c.G119A p.R40H . . . AQP3 360 hgsc.bcm.edu 36 9 33432939 33432939 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_004925 exon4 c.C403A p.L135I . . . CDC14B 8555 hgsc.bcm.edu 36 9 98325486 98325486 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001077181 exon11 c.C1012T p.R338C . . . C9orf156 51531 hgsc.bcm.edu 36 9 99712199 99712199 + Silent SNP A A C novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_016481 exon4 c.T930G p.P310P . . . FREM2 341640 hgsc.bcm.edu 36 13 38163234 38163234 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_207361 exon1 c.C3753A p.S1251R . . . ZNF239 8187 hgsc.bcm.edu 36 10 43372598 43372598 + Silent SNP G G T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001099283 exon2 c.C936A p.V312V . . . ANXA8L1 728113 hgsc.bcm.edu 36 10 46587121 46587121 + Silent SNP G G A rs2271517 unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001040084 exon4 c.C276T p.Y92Y . . . TET1 80312 hgsc.bcm.edu 36 10 70076010 70076010 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_030625 exon4 c.G3518A p.R1173Q . . . KCNMA1 3778 hgsc.bcm.edu 36 10 78538327 78538327 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001161353 exon9 c.G1141A p.A381T . . . MLLT10 8028 hgsc.bcm.edu 36 10 22002777 22002780 + Frame_Shift_Del DEL GTCT GTCT - novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 GTCT GTCT GTCT - GTCT GTCT Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001195626 exon10 c.1544_1547del p.515_516del . . . APC 324 hgsc.bcm.edu 36 5 112202530 112202530 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001127511 exon14 c.C3286T p.R1096X APC,large_intestine,colon,Substitution - Nonsense,0 . . MRPS30 10884 hgsc.bcm.edu 36 5 44850896 44850896 + Missense_Mutation SNP A A C novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_016640 exon5 c.A1155C p.Q385H . . . IQGAP2 10788 hgsc.bcm.edu 36 5 76003479 76003479 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_006633 exon24 c.G2983A p.D995N . . . WDR41 55255 hgsc.bcm.edu 36 5 76794738 76794738 + Missense_Mutation SNP A A C novel unknown TCGA-AA-A00L-01A-01W-A005-10 TCGA-AA-A00L-10A-01W-A005-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_018268 exon4 c.T286G p.L96V . . .