Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DNMBP	23268	broad.mit.edu	36	10	101706720	101706720	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015221	exon4	c.G501A	p.R167R	.	.	.
NHLRC2	374354	broad.mit.edu	36	10	115651622	115651622	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198514	exon7	c.C1347T	p.L449L	.	.	.
CUBN	8029	broad.mit.edu	36	10	17002031	17002031	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081	exon44	c.C6758A	p.A2253D	.	.	.
GAD2	2572	broad.mit.edu	36	10	26621419	26621419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134366	exon14	c.C1406T	p.A469V	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94665574	94665574	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013848	exon7	c.G728A	p.R243H	.	.	.
MFRP	83552	broad.mit.edu	36	11	118718897	118718898	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031433	exon10	c.1151_1152insC	p.H384fs	.	.	.
MAPK8IP1	9479	broad.mit.edu	36	11	45880545	45880546	+	Frame_Shift_Ins	INS	-	CC	CC	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005456	exon5	c.651_652insCC	p.L217fs	.	.	.
LTBP3	4054	broad.mit.edu	36	11	65077568	65077569	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130144	exon4	c.874_875insG	p.N292fs	.	.	.
GVINP1	387751	broad.mit.edu	36	11	6692423	6692424	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NPAT	4863	broad.mit.edu	36	11	107549291	107549291	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002519	exon13	c.C1630G	p.P544A	.	.	.
TECTA	7007	broad.mit.edu	36	11	120521678	120521678	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005422	exon11	c.G3748T	p.D1250Y	.	.	.
TSG101	7251	broad.mit.edu	36	11	18480684	18480684	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006292	exon7	c.C565T	p.P189S	.	.	.
ANO5	203859	broad.mit.edu	36	11	22181953	22181953	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142649	exon2	c.A68T	p.Y23F	.	.	.
OR51I1	390063	broad.mit.edu	36	11	5418566	5418566	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005288	exon1	c.C755G	p.A252G	.	.	.
OR51I2	390064	broad.mit.edu	36	11	5431722	5431722	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004754	exon1	c.C428A	p.A143E	.	.	.
OR56A1	120796	broad.mit.edu	36	11	6005494	6005494	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001917	exon1	c.C17T	p.A6V	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76594871	76594871	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000260	exon41	c.C5718T	p.V1906V	.	.	.
TMEM132A	54972	broad.mit.edu	36	11	60460642	60460642	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017870	exon11	c.2762delA	p.E921fs	.	.	.
MBD6	114785	broad.mit.edu	36	12	56207268	56207269	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052897	exon7	c.2073_2074insC	p.T691fs	.	.	.
KLRC1	3821	broad.mit.edu	36	12	10493151	10493151	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213658	exon6	c.T441C	p.C147C	.	.	.
CCDC60	160777	broad.mit.edu	36	12	118453165	118453165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178499	exon13	c.C1465T	p.R489W	.	.	.
CAPZA3	93661	broad.mit.edu	36	12	18783329	18783329	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033328	exon1	c.T860C	p.V287A	.	.	.
SYT10	341359	broad.mit.edu	36	12	33451202	33451202	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198992	exon3	c.G866T	p.R289I	.	.	.
MLL2	8085	broad.mit.edu	36	12	47713934	47713934	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003482	exon39	c.G10821A	p.Q3607Q	.	.	.
SUOX	6821	broad.mit.edu	36	12	54684715	54684715	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000456	exon6	c.C1275G	p.V425V	.	.	.
NEDD1	121441	broad.mit.edu	36	12	95837899	95837899	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152905	exon6	c.T354C	p.H118H	.	.	.
C12orf45	121053	broad.mit.edu	36	12	103912590	103912590	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152318	exon4	c.544delA	p.K182fs	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109633389	109633389	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001845	exon28	c.G2047A	p.A683T	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98250624	98250624	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015296	exon52	c.G5876A	p.R1959Q	.	.	.
METTL3	56339	broad.mit.edu	36	14	21038564	21038564	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019852	exon6	c.A1217G	p.Y406C	.	.	.
NIN	51199	broad.mit.edu	36	14	50329216	50329216	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182944	exon5	c.G399A	p.A133A	.	.	.
PRKCH	5583	broad.mit.edu	36	14	60989735	60989735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006255	exon7	c.G871A	p.V291M	.	.	.
GABRG3	2567	broad.mit.edu	36	15	25446297	25446297	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033223	exon8	c.C989T	p.A330V	.	.	.
TRIM69	140691	broad.mit.edu	36	15	42834424	42834424	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182985	exon2	c.G41A	p.G14D	.	.	.
LRRC49	54839	broad.mit.edu	36	15	69063625	69063625	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017691	exon11	c.C1144A	p.L382I	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69905984	69905984	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006901	exon42	c.T7638C	p.F2546F	.	.	.
HOMER2	9455	broad.mit.edu	36	15	81352570	81352570	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199331	exon2	c.G33A	p.A11A	.	.	.
NR2F2	7026	broad.mit.edu	36	15	94676547	94676549	+	In_Frame_Del	DEL	AGC	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	AGC	AGC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021005	exon1	c.209_211del	p.70_71del	.	.	.
ARMC5	79798	broad.mit.edu	36	16	31383400	31383401	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105247	exon4	c.1555_1556insG	p.W519fs	.	.	.
CDH11	1009	broad.mit.edu	36	16	63542201	63542201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001797	exon12	c.G1864A	p.A622T	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87879364	87879364	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013275	exon9	c.G1087A	p.D363N	.	.	.
ZNF720	124411	broad.mit.edu	36	16	31673701	31673701	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CDK12	51755	broad.mit.edu	36	17	34935846	34935846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016507	exon13	c.G3511A	p.E1171K	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5932059	5932059	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015253	exon3	c.C453T	p.D151D	.	.	.
SOX9	6662	broad.mit.edu	36	17	67631329	67631329	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000346	exon3	c.C736T	p.Q246X	.	.	.
TRAPPC8	22878	broad.mit.edu	36	18	27680740	27680740	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014939	exon26	c.A3774T	p.E1258D	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6992366	6992366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005559	exon30	c.G4279A	p.A1427T	.	.	.
PRR12	57479	broad.mit.edu	36	19	54791795	54791796	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020719	exon4	c.2391_2392insC	p.P797fs	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12402522	12402522	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005815	exon4	c.C1464G	p.F488L	.	.	.
SYT3	84258	broad.mit.edu	36	19	55820594	55820594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032298	exon6	c.G1442A	p.R481H	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56650538	56650538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014442	exon4	c.G997A	p.A333T	.	.	.
ZNF135	7694	broad.mit.edu	36	19	63263215	63263215	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003436	exon2	c.G33A	p.P11P	.	.	.
C3	718	broad.mit.edu	36	19	6671581	6671581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000064	exon1	c.C20T	p.P7L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8952401	8952401	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon1	c.A414G	p.G138G	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9440828	9440828	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152476	exon9	c.C565A	p.L189I	.	.	.
IZUMO4	113177	broad.mit.edu	36	19	2048297	2048297	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039846	exon2	c.264delG	p.M88fs	.	.	.
KCNC3	3748	broad.mit.edu	36	19	55523531	55523531	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004977	exon1	c.621delC	p.P207fs	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243917702	243917703	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018012	exon12	c.4794_4795insC	p.L1598fs	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31922363	31922364	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001856	exon32	c.2217_2218insG	p.G739fs	.	.	.
PRDM2	7799	broad.mit.edu	36	1	13980121	13980121	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007257	exon3	c.T2641A	p.S881T	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153717229	153717229	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018489	exon3	c.G2056T	p.A686S	.	.	.
SMG5	23381	broad.mit.edu	36	1	154504783	154504783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015327	exon8	c.G761A	p.R254Q	.	.	.
OR6K2	81448	broad.mit.edu	36	1	156937021	156937021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005279	exon1	c.G46A	p.A16T	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174935040	174935040	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020318	exon8	c.G2928T	p.E976D	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184317139	184317139	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031935	exon56	c.G8777A	p.R2926Q	.	.	.
RNPEP	6051	broad.mit.edu	36	1	200233261	200233261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020216	exon5	c.G1046A	p.G349D	.	.	.
MTR	4548	broad.mit.edu	36	1	235040504	235040504	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000254	exon5	c.A488G	p.D163G	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5857697	5857697	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015102	exon21	c.C2868T	p.A956A	.	.	.
TTLL7	79739	broad.mit.edu	36	1	84128725	84128725	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024686	exon19	c.C2236T	p.R746C	.	.	.
BPIL3	128859	broad.mit.edu	36	20	31087088	31087088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_174897	exon6	c.G526A	p.A176T	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36786797	36786797	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080552	exon1	c.C16A	p.R6S	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40739945	40739945	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133170	exon7	c.C1128T	p.P376P	.	.	.
GNAS	2778	broad.mit.edu	36	20	56917816	56917816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080426	exon7	c.G560A	p.R187H	 GNAS,large_intestine,colon,Substitution - Missense,+1 	.	.
SRXN1	140809	broad.mit.edu	36	20	577547	577547	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080725	exon2	c.C225T	p.S75S	.	.	.
IL17RA	23765	broad.mit.edu	36	22	15969490	15969491	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014339	exon13	c.1381_1382insG	p.R461fs	.	.	.
TOB2	10766	broad.mit.edu	36	22	40163152	40163153	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016272	exon2	c.144_145insA	p.K48fs	.	.	.
ALG12	79087	broad.mit.edu	36	22	48683549	48683550	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024105	exon10	c.1408_1409insC	p.F470fs	.	.	.
FAM123C	205147	broad.mit.edu	36	2	131238581	131238582	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105193	exon2	c.2466_2467insG	p.E822fs	.	.	.
ZFP36L2	678	broad.mit.edu	36	2	43305846	43305847	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006887	exon2	c.601_602insT	p.H201fs	.	.	.
TNFAIP6	7130	broad.mit.edu	36	2	151934797	151934797	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007115	exon4	c.G412A	p.V138I	.	.	.
DPP4	1803	broad.mit.edu	36	2	162574025	162574025	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001935	exon21	c.A1859G	p.D620G	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166876418	166876418	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002977	exon2	c.C95G	p.S32X	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186380249	186380249	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173651	exon17	c.G18238A	p.A6080T	.	.	.
FN1	2335	broad.mit.edu	36	2	215997276	215997276	+	Missense_Mutation	SNP	C	T	T	rs13306372	byHapMap	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212476	exon8	c.G1054A	p.G352S	.	.	.
MFF	56947	broad.mit.edu	36	2	227903724	227903724	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020194	exon4	c.C177T	p.N59N	.	.	.
UGT1A4	54657	broad.mit.edu	36	2	234292819	234292819	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007120	exon1	c.T614C	p.M205T	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33213400	33213400	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000627	exon1	c.C92A	p.T31N	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33605734	33605734	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170672	exon11	c.C834A	p.V278V	.	.	.
NRXN1	9378	broad.mit.edu	36	2	51108724	51108724	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135659	exon2	c.C192T	p.R64R	.	.	.
SCAP	22937	broad.mit.edu	36	3	47434192	47434193	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012235	exon17	c.2576_2577insC	p.R859fs	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51393903	51393904	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004947	exon53	c.5925_5926insT	p.X1975delinsX	.	.	.
PLCXD2	257068	broad.mit.edu	36	3	112909537	112909537	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153268	exon2	c.C238T	p.R80C	.	.	.
TMEM108	66000	broad.mit.edu	36	3	134597417	134597417	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001136469	exon6	c.G1625A	p.R542H	.	.	.
FGF12	2257	broad.mit.edu	36	3	193608574	193608574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021032	exon1	c.G133A	p.V45I	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78800029	78800029	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002941	exon13	c.C1744A	p.Q582K	.	.	.
HAND2	9464	broad.mit.edu	36	4	174684795	174684796	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
FAT4	79633	broad.mit.edu	36	4	126549057	126549057	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon4	c.G5578T	p.V1860L	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134330748	134330748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032961	exon5	c.C3106T	p.R1036W	.	.	.
CNGA1	1259	broad.mit.edu	36	4	47648135	47648135	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000087	exon5	c.A228T	p.P76P	.	.	.
LARP1	23367	broad.mit.edu	36	5	154115865	154115866	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C646T	p.R216X	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161512778	161512778	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198904	exon10	c.C1254T	p.D418D	.	.	.
CDH10	1008	broad.mit.edu	36	5	24523836	24523836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006727	exon12	c.G2060A	p.R687Q	.	.	.
LIFR	3977	broad.mit.edu	36	5	38521725	38521725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127671	exon17	c.G2450A	p.G817D	.	.	.
PARP8	79668	broad.mit.edu	36	5	50128779	50128779	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178055	exon15	c.G1530A	p.V510V	.	.	.
ADAT2	134637	broad.mit.edu	36	6	143791498	143791498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182503	exon5	c.G476A	p.R159Q	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152552124	152552124	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015293	exon43	c.C6829T	p.R2277C	.	.	.
NOX3	50508	broad.mit.edu	36	6	155806177	155806177	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015718	exon5	c.G408A	p.Q136Q	.	.	.
UNC93A	54346	broad.mit.edu	36	6	167629626	167629626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143947	exon3	c.G386A	p.R129H	.	.	.
HIST1H2AD	3013	broad.mit.edu	36	6	26307450	26307450	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021065	exon1	c.A1G	p.M1V	.	.	.
FLOT1	10211	broad.mit.edu	36	6	30817584	30817584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005803	exon3	c.G83T	p.R28L	.	.	.
BAT2	7916	broad.mit.edu	36	6	31707896	31707896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004638	exon16	c.G3467A	p.R1156Q	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51721054	51721054	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170724	exon58	c.C9319T	p.R3107X	.	.	.
MARCKS	4082	broad.mit.edu	36	6	114287903	114287903	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002356	exon2	c.454delA	p.K152fs	.	.	.
TFR2	7036	broad.mit.edu	36	7	100062348	100062349	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003227	exon17	c.2110_2111insA	p.R704fs	.	.	.
FERD3L	222894	broad.mit.edu	36	7	19151497	19151497	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152898	exon1	c.C14T	p.P5L	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21744984	21744984	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003777	exon47	c.C7808T	p.P2603L	.	.	.
HECW1	23072	broad.mit.edu	36	7	43318134	43318134	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015052	exon4	c.A275G	p.H92R	.	.	.
ZNF713	349075	broad.mit.edu	36	7	55958858	55958858	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182633	exon3	c.A240C	p.E80D	.	.	.
C7orf43	55262	broad.mit.edu	36	7	99591361	99591361	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018275	exon9	c.C1264T	p.R422C	.	.	.
XKR6	286046	broad.mit.edu	36	8	10793457	10793457	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173683	exon3	c.G1341A	p.T447T	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133221509	133221509	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004519	exon11	c.G1564A	p.V522I	.	.	.
NEFL	4747	broad.mit.edu	36	8	24869715	24869715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006158	exon1	c.G232A	p.A78T	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3153427	3153427	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon24	c.G3638T	p.X1213L	.	.	.
MYST3	7994	broad.mit.edu	36	8	41911302	41911302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099413	exon18	c.C3593T	p.A1198V	.	.	.
GDF6	392255	broad.mit.edu	36	8	97226846	97226846	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001557	exon2	c.C489T	p.G163G	.	.	.
PLEC	5339	broad.mit.edu	36	8	145065903	145065903	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_201383	exon32	c.10086delC	p.A3362fs	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126589323	126589323	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182487	exon2	c.G339T	p.A113A	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136856386	136856386	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000093	exon62	c.C4818T	p.D1606D	.	.	.
FCN1	2219	broad.mit.edu	36	9	136945266	136945266	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002003	exon5	c.T322A	p.S108T	.	.	.
TEK	7010	broad.mit.edu	36	9	27158543	27158543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000459	exon3	c.G415A	p.V139M	.	.	.
KIAA1432	57589	broad.mit.edu	36	9	5747384	5747384	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020829	exon16	c.T1688C	p.L563P	.	.	.
TEX13A	56157	broad.mit.edu	36	X	104351064	104351065	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031274	exon3	c.470_471insG	p.A157fs	.	.	.
PLXNA3	55558	broad.mit.edu	36	X	153341758	153341759	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017514	exon2	c.41_42insG	p.V14fs	.	.	.
AGTR2	186	broad.mit.edu	36	X	115218111	115218111	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000686	exon3	c.G550A	p.V184I	.	.	.
ARX	170302	broad.mit.edu	36	X	24943638	24943638	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139058	exon1	c.C138A	p.A46A	.	.	.