Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target MRPS16 51021 broad.mit.edu 36 10 74681564 74681564 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016065 exon2 c.C237T p.C79C . . . C11orf71 54494 broad.mit.edu 36 11 113776168 113776168 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019021 exon1 c.G96A p.A32A . . . MRGPRX3 117195 broad.mit.edu 36 11 18115434 18115434 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_054031 exon3 c.G109A p.V37I . . . LDHAL6A 160287 broad.mit.edu 36 11 18442091 18442091 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144972 exon2 c.G134A p.S45N . . . OR5M9 390162 broad.mit.edu 36 11 55986723 55986723 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001004743 exon1 c.C731T p.T244M . . . DTX4 23220 broad.mit.edu 36 11 58728809 58728809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015177 exon9 c.G1711A p.V571I . . . RELT 84957 broad.mit.edu 36 11 72780957 72780957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152222 exon6 c.G421A p.G141S . . . C12orf51 283450 broad.mit.edu 36 12 111153765 111153765 + Silent SNP G T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001109662 exon38 c.C5619A p.S1873S . . . OAS3 4940 broad.mit.edu 36 12 111890158 111890158 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006187 exon14 c.C2900T p.P967L . . . KRAS 3845 broad.mit.edu 36 12 25269829 25269829 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004985 exon4 c.G436A p.A146T KRAS,large_intestine,NS,Substitution - Missense,0 . . SLC25A3 5250 broad.mit.edu 36 12 97519335 97519335 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002635 exon8 c.G984A p.Q328Q . . . SLC10A2 6555 broad.mit.edu 36 13 102516238 102516238 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000452 exon1 c.C363T p.G121G . . . SACS 26278 broad.mit.edu 36 13 22808042 22808042 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014363 exon10 c.C7973A p.A2658D . . . RALGAPA1 253959 broad.mit.edu 36 14 35281390 35281390 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_194301 exon11 c.C1384T p.L462F . . . ATP10A 57194 broad.mit.edu 36 15 23510382 23510382 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024490 exon10 c.G1876A p.G626R . . . ANKDD1A 348094 broad.mit.edu 36 15 62996724 62996724 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_182703 exon3 c.C225T p.D75D . . . CYP1A1 1543 broad.mit.edu 36 15 72802091 72802091 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000499 exon2 c.G401A p.R134H . . . AKAP13 11214 broad.mit.edu 36 15 84067524 84067524 + Silent SNP G C C novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006738 exon26 c.G6726C p.V2242V . . . LASS3 204219 broad.mit.edu 36 15 98760540 98760540 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178842 exon13 c.G1053A p.E351E . . . CBX8 57332 broad.mit.edu 36 17 75383256 75383257 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020649 exon5 c.943_944insC p.S315fs . . . MAP2K4 6416 broad.mit.edu 36 17 11969339 11969339 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003010 exon8 c.G817T p.E273X . . . TRAF4 9618 broad.mit.edu 36 17 24100579 24100579 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004295 exon7 c.C1270T p.R424W . . . SLC6A4 6532 broad.mit.edu 36 17 25560339 25560339 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001045 exon12 c.C1497T p.P499P . . . PIP4K2B 8396 broad.mit.edu 36 17 34181001 34181001 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003559 exon8 c.C858T p.H286H . . . KRTAP4-12 83755 broad.mit.edu 36 17 36533688 36533688 + Silent SNP A G G rs28515113 unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031854 exon1 c.T213C p.C71C . . . HELZ 9931 broad.mit.edu 36 17 62536222 62536222 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014877 exon29 c.C3961T p.R1321C . . . ST8SIA5 29906 broad.mit.edu 36 18 42514369 42514369 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013305 exon7 c.C765T p.T255T . . . KIAA1683 80726 broad.mit.edu 36 19 18237110 18237111 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 - - - - - - Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_025249 exon3 c.2240_2241insC p.Q747fs . . . CACNA1A 773 broad.mit.edu 36 19 13258513 13258513 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001174080 exon20 c.C3360T p.A1120A . . . ARRDC2 27106 broad.mit.edu 36 19 17982520 17982520 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001025604 exon7 c.G1137A p.P379P . . . TSHZ3 57616 broad.mit.edu 36 19 36460921 36460921 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020856 exon2 c.G1618A p.G540S . . . DLL3 10683 broad.mit.edu 36 19 44687807 44687807 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_203486 exon6 c.C969T p.N323N . . . CYP2A7 1549 broad.mit.edu 36 19 46079365 46079365 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000764 exon2 c.A312C p.Q104H . . . ARHGEF1 9138 broad.mit.edu 36 19 47088555 47088555 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198977 exon6 c.C310T p.R104W . . . EML2 24139 broad.mit.edu 36 19 50828050 50828050 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001193269 exon9 c.G860A p.R287H . . . NCR1 9437 broad.mit.edu 36 19 60109475 60109475 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004829 exon2 c.G41A p.C14Y . . . ZNF324 25799 broad.mit.edu 36 19 63674961 63674961 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014347 exon4 c.C1290T p.C430C . . . MUC16 94025 broad.mit.edu 36 19 8950222 8950222 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024690 exon1 c.G2593T p.E865X . . . FLG2 388698 broad.mit.edu 36 1 150596138 150596138 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001014342 exon3 c.G748T p.E250X . . . PGLYRP3 114771 broad.mit.edu 36 1 151537204 151537204 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052891 exon7 c.C878T p.A293V . . . CADM3 57863 broad.mit.edu 36 1 157408246 157408246 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021189 exon1 c.G67A p.G23R . . . PADI6 353238 broad.mit.edu 36 1 17594035 17594035 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_207421 exon12 c.G1340A p.R447H . . . IL24 11009 broad.mit.edu 36 1 205140300 205140300 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001185156 exon4 c.A281T p.Q94L . . . KIF26B 55083 broad.mit.edu 36 1 243770752 243770752 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018012 exon5 c.C1227T p.S409S . . . OR2M4 26245 broad.mit.edu 36 1 246469653 246469653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017504 exon1 c.C800T p.T267M . . . TESK2 10420 broad.mit.edu 36 1 45585891 45585891 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007170 exon7 c.C685T p.R229X . . . ZYG11B 79699 broad.mit.edu 36 1 53009529 53009529 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024646 exon3 c.C446T p.S149F . . . DNMT3B 1789 broad.mit.edu 36 20 30846887 30846887 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_175848 exon10 c.C1078T p.R360X . . . APCDD1L 164284 broad.mit.edu 36 20 56469443 56469443 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153360 exon4 c.G1315A p.D439N . . . ANKRD5 63926 broad.mit.edu 36 20 9981776 9981776 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198798 exon8 c.C1887T p.D629D . . . CECR2 27443 broad.mit.edu 36 22 16408280 16408280 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031413 exon16 c.G3239A p.R1080H . . . SOX10 6663 broad.mit.edu 36 22 36709370 36709370 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006941 exon2 c.C368T p.A123V . . . TTN 7273 broad.mit.edu 36 2 179117240 179117240 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003319 exon173 c.G68766A p.P22922P . . . TTN 7273 broad.mit.edu 36 2 179209736 179209736 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003319 exon53 c.G13768A p.E4590K . . . HECW2 57520 broad.mit.edu 36 2 197006272 197006272 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020760 exon2 c.A121G p.M41V . . . DOCK10 55619 broad.mit.edu 36 2 225368015 225368015 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014689 exon45 c.G4979A p.R1660H . . . KIF1A 547 broad.mit.edu 36 2 241359137 241359137 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004321 exon14 c.G1238A p.R413H . . . ABI3BP 25890 broad.mit.edu 36 3 101954427 101954427 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015429 exon33 c.G2883A p.E961E . . . COL6A6 131873 broad.mit.edu 36 3 131863777 131863777 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001102608 exon34 c.G6437A p.R2146Q . . . MED12L 116931 broad.mit.edu 36 3 152570024 152570024 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_053002 exon24 c.C3556A p.L1186I . . . CLCN2 1181 broad.mit.edu 36 3 185547240 185547240 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004366 exon24 c.A2545G p.K849E . . . SCN5A 6331 broad.mit.edu 36 3 38567936 38567936 + Missense_Mutation SNP C T T rs28937316 unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001099405 exon27 c.G4877A p.R1626H . . . TGM4 7047 broad.mit.edu 36 3 44927819 44927819 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003241 exon13 c.G1830T p.K610N . . . MITF 4286 broad.mit.edu 36 3 70096861 70096861 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198158 exon9 c.G1014A p.T338T . . . INPP4B 8821 broad.mit.edu 36 4 143264010 143264010 + Silent SNP T C C novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003866 exon21 c.A1902G p.G634G . . . POLR2B 5431 broad.mit.edu 36 4 57567861 57567861 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000938 exon10 c.C1340T p.S447F . . . SLC12A2 6558 broad.mit.edu 36 5 127499338 127499338 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001046 exon7 c.C1347T p.F449F . . . FSTL4 23105 broad.mit.edu 36 5 132580902 132580902 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015082 exon13 c.T1526C p.V509A . . . SLIT3 6586 broad.mit.edu 36 5 168113472 168113472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003062 exon17 c.C1804T p.R602C . . . MAP1B 4131 broad.mit.edu 36 5 71529563 71529563 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005909 exon5 c.C4625T p.T1542M . . . HLA-H 3136 broad.mit.edu 36 6 29963843 29963844 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . LRFN2 57497 broad.mit.edu 36 6 40468395 40468395 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020737 exon3 c.G1635A p.T545T . . . TFAP2D 83741 broad.mit.edu 36 6 50791271 50791271 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_172238 exon2 c.G523T p.A175S . . . ANKRD6 22881 broad.mit.edu 36 6 90394086 90394086 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014942 exon14 c.C1435T p.R479C . . . PTN 5764 broad.mit.edu 36 7 136588880 136588880 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002825 exon3 c.G160T p.V54L . . . CARD11 84433 broad.mit.edu 36 7 2930458 2930458 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032415 exon15 c.C1875T p.S625S . . . GCK 2645 broad.mit.edu 36 7 44155897 44155897 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000162 exon6 c.C666T p.V222V . . . SFTPC 6440 broad.mit.edu 36 8 22077004 22077005 + Splice_Site INS - GT GT novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003018 exon4 c.435_436insGT p.Q145fs . . . DLC1 10395 broad.mit.edu 36 8 13002304 13002304 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_182643 exon9 c.G1913T p.G638V . . . LOXL2 4017 broad.mit.edu 36 8 23281599 23281599 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002318 exon2 c.C211T p.R71W . . . RGS20 8601 broad.mit.edu 36 8 55014716 55014716 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_170587 exon3 c.C538T p.R180W . . . ORM2 5005 broad.mit.edu 36 9 116133708 116133708 + Silent SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000608 exon4 c.G369A p.R123R . . . AKNA 80709 broad.mit.edu 36 9 116170572 116170572 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_030767 exon5 c.C1541T p.P514L . . . BNC2 54796 broad.mit.edu 36 9 16427028 16427028 + Silent SNP G T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017637 exon6 c.C1164A p.T388T . . . TRPM6 140803 broad.mit.edu 36 9 76601487 76601487 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001177310 exon18 c.G2366A p.S789N . . . DAPK1 1612 broad.mit.edu 36 9 89409718 89409718 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004938 exon3 c.G92A p.R31H . . . DCX 1641 broad.mit.edu 36 X 110442559 110442559 + Silent SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178153 exon6 c.G993A p.T331T . . . HTR2C 3358 broad.mit.edu 36 X 114047858 114047858 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000868 exon6 c.C1001A p.S334Y . . . LUZP4 51213 broad.mit.edu 36 X 114447111 114447111 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016383 exon4 c.C428T p.P143L . . . DCAF12L1 139170 broad.mit.edu 36 X 125514241 125514241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3986-01A-02W-0995-10 TCGA-AA-3986-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178470 exon1 c.G32A p.R11Q . . .