Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SFMBT2	57713	broad.mit.edu	36	10	7330529	7330529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001029880	exon8	c.C959T	p.A320V	.	.	.
MYOF	26509	broad.mit.edu	36	10	95083562	95083562	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133337	exon41	c.G4623A	p.T1541T	.	.	.
LGI1	9211	broad.mit.edu	36	10	95507974	95507974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005097	exon1	c.C83T	p.A28V	.	.	.
TSG101	7251	broad.mit.edu	36	11	18459975	18459976	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006292	exon9	c.861_862insA	p.N287fs	.	.	.
RAPSN	5913	broad.mit.edu	36	11	47416839	47416840	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102662249	102662249	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001377	exon74	c.G10946A	p.R3649H	.	.	.
CASP4	837	broad.mit.edu	36	11	104324580	104324580	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033306	exon6	c.C647A	p.P216Q	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118277635	118277635	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182557	exon6	c.A2027G	p.E676G	.	.	.
USP2	9099	broad.mit.edu	36	11	118748697	118748697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004205	exon2	c.C704T	p.T235M	.	.	.
ESAM	90952	broad.mit.edu	36	11	124131657	124131657	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138961	exon3	c.C441T	p.L147L	.	.	.
CDON	50937	broad.mit.edu	36	11	125390539	125390539	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016952	exon7	c.T1005G	p.V335V	.	.	.
OR4C6	219432	broad.mit.edu	36	11	55189677	55189677	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004704	exon1	c.C459T	p.H153H	.	.	.
OR8K5	219453	broad.mit.edu	36	11	55684012	55684012	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004058	exon1	c.T358A	p.Y120N	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72238540	72238540	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014824	exon14	c.G1351A	p.D451N	.	.	.
MFSD5	84975	broad.mit.edu	36	12	51933306	51933307	+	Frame_Shift_Ins	INS	-	AGGGG	AGGGG	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001170790	exon2	c.741_742insAGGGG	p.S247fs	.	.	.
KSR2	283455	broad.mit.edu	36	12	116453861	116453861	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173598	exon11	c.C1635A	p.I545I	.	.	.
FKBP11	51303	broad.mit.edu	36	12	47602228	47602228	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016594	exon6	c.G412A	p.V138M	.	.	.
OR6C76	390326	broad.mit.edu	36	12	54106558	54106558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005183	exon1	c.G254A	p.G85E	.	.	.
MPHOSPH8	54737	broad.mit.edu	36	13	19142398	19142398	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017520	exon12	c.C2352T	p.I784I	.	.	.
SACS	26278	broad.mit.edu	36	13	22808255	22808255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014363	exon10	c.C7760T	p.A2587V	.	.	.
KL	9365	broad.mit.edu	36	13	32526207	32526207	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004795	exon2	c.T1123G	p.L375V	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74334124	74334124	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019589	exon5	c.G2371A	p.D791N	.	.	.
DLL4	54567	broad.mit.edu	36	15	39014537	39014538	+	Frame_Shift_Ins	INS	-	CC	CC	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019074	exon8	c.1170_1171insCC	p.C390fs	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24344169	24344169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021912	exon9	c.G1286A	p.R429Q	.	.	.
HERC2	8924	broad.mit.edu	36	15	26129823	26129823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004667	exon44	c.G6989A	p.R2330Q	.	.	.
SYNM	23336	broad.mit.edu	36	15	97487909	97487909	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015286	exon4	c.C1820T	p.P607L	.	.	.
ADCY9	115	broad.mit.edu	36	16	3982275	3982275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001116	exon5	c.G2080A	p.E694K	.	.	.
SLC12A3	6559	broad.mit.edu	36	16	55469569	55469569	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000339	exon9	c.C1175G	p.T392S	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69498824	69498824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032821	exon50	c.C8465T	p.T2822M	.	.	.
WWOX	51741	broad.mit.edu	36	16	77016422	77016422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016373	exon7	c.C760T	p.R254C	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60968049	60968050	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004655	exon4	c.1045_1046insT	p.L349fs	.	.	.
B9D1	27077	broad.mit.edu	36	17	19187282	19187282	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015681	exon7	c.G558A	p.G186G	.	.	.
RHOT1	55288	broad.mit.edu	36	17	27534347	27534347	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033566	exon8	c.C483T	p.Y161Y	.	.	.
PGAP3	93210	broad.mit.edu	36	17	35083334	35083334	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033419	exon6	c.G653T	p.R218L	.	.	.
TP53	7157	broad.mit.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000546	exon10	c.C1024T	p.R342X	 TP53,breast,NS,Substitution - Nonsense,0 	.	.
ENPP7	339221	broad.mit.edu	36	17	75323808	75323808	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178543	exon3	c.C771T	p.G257G	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41704588	41704588	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020964	exon36	c.G6167A	p.R2056Q	 KIAA1632,breast,NS,Substitution - Missense,-1 	.	.
SEC11C	90701	broad.mit.edu	36	18	54975848	54975848	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033280	exon5	c.A496G	p.I166V	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8103512	8103512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002845	exon12	c.C1885T	p.R629C	.	.	.
MYPOP	339344	broad.mit.edu	36	19	51085811	51085812	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012643	exon3	c.1110_1111insC	p.P370fs	.	.	.
CASP14	23581	broad.mit.edu	36	19	15027255	15027255	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012114	exon6	c.C535T	p.R179X	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15161132	15161132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000435	exon7	c.G1144A	p.G382S	.	.	.
COMP	1311	broad.mit.edu	36	19	18756074	18756074	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000095	exon17	c.C2014T	p.R672X	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21948537	21948537	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007153	exon4	c.G1139C	p.W380S	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45060684	45060684	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003890	exon28	c.C12504T	p.S4168S	.	.	.
KCNA7	3743	broad.mit.edu	36	19	54265898	54265898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031886	exon2	c.G605A	p.R202H	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57311900	57311900	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178523	exon4	c.A329C	p.E110A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8910663	8910663	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon5	c.C31968T	p.V10656V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8918575	8918575	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon3	c.C29871T	p.T9957T	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10647978	10647978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001079843	exon5	c.G254A	p.R85Q	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109615553	109615553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001408	exon27	c.G7699A	p.A2567T	.	.	.
NRAS	4893	broad.mit.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon2	c.G35A	p.G12D	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
TNR	7143	broad.mit.edu	36	1	173601882	173601882	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003285	exon11	c.G2069A	p.R690Q	.	.	.
ZC3H11A	9877	broad.mit.edu	36	1	202088004	202088004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014827	exon20	c.G2287A	p.G763R	.	.	.
OR2T6	254879	broad.mit.edu	36	1	246618221	246618221	+	Missense_Mutation	SNP	C	T	T	rs61736247	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005471	exon1	c.C689T	p.S230L	.	.	.
MAP7D1	55700	broad.mit.edu	36	1	36409358	36409358	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018067	exon2	c.G246A	p.P82P	.	.	.
GUCA2B	2981	broad.mit.edu	36	1	42392951	42392951	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007102	exon2	c.G104A	p.R35Q	.	.	.
RNF220	55182	broad.mit.edu	36	1	44874411	44874411	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018150	exon8	c.T1116C	p.G372G	.	.	.
ROR1	4919	broad.mit.edu	36	1	64416227	64416227	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005012	exon9	c.G1915A	p.E639K	.	.	.
PARK7	11315	broad.mit.edu	36	1	7967617	7967617	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007262	exon7	c.C486T	p.F162F	.	.	.
PLCG1	5335	broad.mit.edu	36	20	39224708	39224708	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002660	exon6	c.C610T	p.R204C	.	.	.
MYBL2	4605	broad.mit.edu	36	20	41777263	41777263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002466	exon13	c.G1900A	p.G634S	.	.	.
SLC17A9	63910	broad.mit.edu	36	20	61065454	61065454	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022082	exon7	c.G799A	p.E267K	.	.	.
IL10RB	3588	broad.mit.edu	36	21	33562687	33562687	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000628	exon2	c.C168T	p.Y56Y	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17547743	17547743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001835	exon31	c.G4741A	p.G1581R	.	.	.
SREBF2	6721	broad.mit.edu	36	22	40603364	40603364	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004599	exon8	c.C1572T	p.F524F	.	.	.
TTN	7273	broad.mit.edu	36	2	179143579	179143579	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon154	c.C48330T	p.Y16110Y	.	.	.
FN1	2335	broad.mit.edu	36	2	215948606	215948606	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212476	exon35	c.G5425A	p.A1809T	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227632507	227632507	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000092	exon28	c.C2241T	p.P747P	.	.	.
SLC16A14	151473	broad.mit.edu	36	2	230619429	230619429	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152527	exon4	c.C657T	p.N219N	.	.	.
IQCA1	79781	broad.mit.edu	36	2	236937322	236937322	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024726	exon15	c.C1709A	p.S570X	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73529642	73529642	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015120	exon8	c.A2477G	p.D826G	.	.	.
RHOA	387	broad.mit.edu	36	3	49380888	49380889	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001664	exon3	c.254_255insT	p.S85fs	.	.	.
NCKIPSD	51517	broad.mit.edu	36	3	48695451	48695452	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZPLD1	131368	broad.mit.edu	36	3	103679059	103679059	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175056	exon11	c.C1203T	p.S401S	.	.	.
DCLK3	85443	broad.mit.edu	36	3	36753715	36753715	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033403	exon2	c.G1440A	p.P480P	.	.	.
WDR48	57599	broad.mit.edu	36	3	39079584	39079584	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020839	exon2	c.C88T	p.R30X	.	.	.
CCBP2	1238	broad.mit.edu	36	3	42881233	42881233	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001296	exon3	c.C235T	p.R79W	.	.	.
CCR2	729230	broad.mit.edu	36	3	46374838	46374838	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001123396	exon2	c.C816T	p.F272F	.	.	.
BSN	8927	broad.mit.edu	36	3	49664430	49664430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003458	exon5	c.G2437A	p.D813N	.	.	.
ZNF518B	85460	broad.mit.edu	36	4	10056331	10056331	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053042	exon3	c.A720T	p.P240P	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120172171	120172171	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133477	exon4	c.G2793A	p.P931P	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123073509	123073509	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003305	exon1	c.C135T	p.D45D	.	.	.
FAT1	2195	broad.mit.edu	36	4	187867263	187867263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005245	exon2	c.G713A	p.S238N	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39568352	39568352	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001100399	exon17	c.C1798T	p.P600S	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46661926	46661926	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000809	exon8	c.G952A	p.A318T	.	.	.
ZNF595	152687	broad.mit.edu	36	4	49379	49379	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039127	exon2	c.T60G	p.C20W	.	.	.
EVC	2121	broad.mit.edu	36	4	5786022	5786022	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153717	exon5	c.C661A	p.L221M	.	.	.
GRID2	2895	broad.mit.edu	36	4	93444863	93444863	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001510	exon1	c.C33T	p.S11S	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140510658	140510658	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018939	exon1	c.C636T	p.I212I	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140790694	140790694	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032094	exon1	c.C184T	p.R62C	.	.	.
DPYSL3	1809	broad.mit.edu	36	5	146755449	146755449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001387	exon13	c.G1490A	p.G497D	.	.	.
GABRB2	2561	broad.mit.edu	36	5	160690575	160690575	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000813	exon9	c.G970T	p.A324S	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33973004	33973004	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016568	exon1	c.C402T	p.T134T	.	.	.
OSMR	9180	broad.mit.edu	36	5	38954747	38954747	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003999	exon11	c.G1411C	p.V471L	.	.	.
ISL1	3670	broad.mit.edu	36	5	50721387	50721387	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002202	exon4	c.T629A	p.M210K	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5514209	5514209	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015325	exon13	c.C1762T	p.L588L	.	.	.
CWC27	10283	broad.mit.edu	36	5	64113573	64113573	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005869	exon3	c.G209A	p.G70D	.	.	.
FAM169A	26049	broad.mit.edu	36	5	74170558	74170558	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015566	exon4	c.G306A	p.E102E	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82976216	82976216	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001884	exon4	c.G497A	p.R166Q	.	.	.
APC	324	broad.mit.edu	36	5	112201730	112201730	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.2486delA	p.E829fs	.	.	.
MAK	4117	broad.mit.edu	36	6	10926188	10926188	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005906	exon3	c.T159C	p.S53S	.	.	.
GCM2	9247	broad.mit.edu	36	6	10982249	10982249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004752	exon5	c.G1486A	p.G496S	.	.	.
ELOVL2	54898	broad.mit.edu	36	6	11108308	11108308	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017770	exon4	c.C331T	p.R111W	.	.	.
HIST1H2AL	8332	broad.mit.edu	36	6	27941112	27941112	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003511	exon1	c.A1T	p.M1L	.	.	.
ELOVL4	6785	broad.mit.edu	36	6	80691388	80691388	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022726	exon3	c.G369A	p.R123R	.	.	.
DGKI	9162	broad.mit.edu	36	7	136732691	136732691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004717	exon32	c.G2953A	p.E985K	.	.	.
ARHGEF5	7984	broad.mit.edu	36	7	143692003	143692003	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005435	exon2	c.G1308A	p.Q436Q	.	.	.
RBM33	155435	broad.mit.edu	36	7	155192417	155192417	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053043	exon7	c.G842A	p.G281D	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18597735	18597735	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178423	exon5	c.A478C	p.T160P	.	.	.
GLI3	2737	broad.mit.edu	36	7	41972063	41972063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000168	exon15	c.G3133A	p.V1045M	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104967345	104967345	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100117	exon4	c.T1342C	p.L448L	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131173447	131173447	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018482	exon24	c.C2526A	p.P842P	.	.	.
SGCZ	137868	broad.mit.edu	36	8	13992409	13992409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139167	exon8	c.G853A	p.V285I	.	.	.
C8orf55	51337	broad.mit.edu	36	8	143813751	143813751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016647	exon2	c.G519T	p.E173D	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1614186	1614186	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004745	exon9	c.C2448T	p.N816N	.	.	.
PHYHIP	9796	broad.mit.edu	36	8	22135299	22135299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014759	exon5	c.G505A	p.G169S	.	.	.
TNFRSF10C	8794	broad.mit.edu	36	8	23030350	23030350	+	Missense_Mutation	SNP	C	A	A	rs61736406	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003841	exon5	c.C641A	p.T214N	.	.	.
BRF2	55290	broad.mit.edu	36	8	37823644	37823644	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018310	exon3	c.T422G	p.L141R	.	.	.
MOS	4342	broad.mit.edu	36	8	57188483	57188483	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005372	exon1	c.G613A	p.A205T	.	.	.